Wall clock time and date at job start Tue Mar 31 2020 06:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53010 * 109.47097 * 2 1 4 4 C 1.52996 * 109.46827 * 305.66095 * 3 2 1 5 5 C 1.53005 * 109.47070 * 294.50593 * 4 3 2 6 6 C 1.52997 * 109.46862 * 65.65759 * 3 2 1 7 7 N 1.46503 * 109.46950 * 65.00387 * 6 3 2 8 8 C 1.46500 * 120.00261 * 89.99805 * 7 6 3 9 9 C 1.50705 * 109.46873 * 89.99745 * 8 7 6 10 10 H 1.07996 * 120.00234 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99633 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99695 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 120.00123 * 359.97438 * 11 9 8 14 14 H 1.48491 * 109.47269 * 270.00598 * 13 11 9 15 15 H 1.48506 * 109.46789 * 30.00329 * 13 11 9 16 16 H 1.48502 * 109.47012 * 149.99986 * 13 11 9 17 17 C 1.34776 * 119.99787 * 269.99428 * 7 6 3 18 18 O 1.21283 * 119.99943 * 0.02562 * 17 7 6 19 19 C 1.50696 * 120.00117 * 180.02562 * 17 7 6 20 20 H 1.09004 * 115.54788 * 325.72388 * 19 17 7 21 21 C 1.53003 * 117.50247 * 111.39135 * 19 17 7 22 22 C 1.53003 * 60.00050 * 107.49208 * 21 19 17 23 23 C 1.52996 * 117.49894 * 252.51575 * 22 21 19 24 24 C 1.52994 * 117.49769 * 107.49174 * 22 21 19 25 25 H 1.09003 * 109.46880 * 186.77919 * 1 2 3 26 26 H 1.08997 * 109.47315 * 306.77615 * 1 2 3 27 27 H 1.08997 * 109.47295 * 66.78040 * 1 2 3 28 28 H 1.09001 * 109.47558 * 239.99953 * 2 1 3 29 29 H 1.08999 * 109.47418 * 119.99722 * 2 1 3 30 30 H 1.08999 * 109.46886 * 185.65718 * 3 2 1 31 31 H 1.08997 * 109.47811 * 54.50950 * 4 3 2 32 32 H 1.09000 * 109.47190 * 174.50861 * 4 3 2 33 33 H 1.09001 * 109.46768 * 55.60768 * 5 4 3 34 34 H 1.08998 * 109.46939 * 175.60145 * 5 4 3 35 35 H 1.08996 * 109.47668 * 295.60358 * 5 4 3 36 36 H 1.08995 * 109.47522 * 304.99819 * 6 3 2 37 37 H 1.09002 * 109.46923 * 184.99847 * 6 3 2 38 38 H 1.09002 * 109.46753 * 330.00045 * 8 7 6 39 39 H 1.08994 * 109.47276 * 209.99855 * 8 7 6 40 40 H 0.97003 * 119.99594 * 179.97438 * 12 11 9 41 41 H 1.08998 * 117.50100 * 214.98355 * 21 19 17 42 42 H 1.09004 * 117.49123 * 359.97438 * 21 19 17 43 43 H 1.09000 * 109.47212 * 128.62160 * 23 22 21 44 44 H 1.09003 * 109.46962 * 248.62416 * 23 22 21 45 45 H 1.09004 * 109.47497 * 8.61600 * 23 22 21 46 46 H 1.09005 * 109.47132 * 351.37713 * 24 22 21 47 47 H 1.09001 * 109.47468 * 111.37751 * 24 22 21 48 48 H 1.08999 * 109.47401 * 231.38101 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.4171 2.2037 -1.1720 5 6 1.9173 1.6087 -2.4899 6 6 1.6494 2.1215 1.3143 7 7 2.3411 1.4660 2.4270 8 6 3.6577 1.9448 2.8551 9 6 3.4873 3.0026 3.9149 10 1 2.4973 3.2898 4.2370 11 6 4.5954 3.6045 4.4726 12 7 4.4467 4.5272 5.3978 13 14 6.3078 3.1082 3.9150 14 1 6.7984 1.9895 4.7592 15 1 6.2596 2.6733 2.4959 16 1 7.2265 4.2675 4.0465 17 6 1.7660 0.4224 3.0568 18 8 0.6761 0.0257 2.7020 19 6 2.4771 -0.2517 4.2017 20 1 3.5634 -0.2936 4.1211 21 6 1.8784 -0.0877 5.6001 22 6 1.7723 -1.4309 4.8752 23 6 0.3993 -1.8354 4.3347 24 6 2.6460 -2.5791 5.3841 25 1 -0.3633 -1.0205 0.1213 26 1 -0.3634 0.6152 0.8231 27 1 -0.3634 0.4051 -0.9444 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.1253 1.4442 -0.1013 31 1 0.3315 2.1194 -1.1242 32 1 1.7027 3.2541 -1.1160 33 1 1.7005 0.5407 -2.5118 34 1 1.4145 2.0987 -3.3237 35 1 2.9931 1.7629 -2.5731 36 1 0.5720 2.0415 1.4584 37 1 1.9341 3.1731 1.2785 38 1 4.1858 2.3682 2.0007 39 1 4.2325 1.1126 3.2615 40 1 5.2263 4.9504 5.7904 41 1 2.5706 -0.0220 6.4395 42 1 0.9703 0.5082 5.6919 43 1 0.4901 -2.1154 3.2852 44 1 0.0195 -2.6829 4.9054 45 1 -0.2899 -0.9962 4.4286 46 1 3.3474 -2.2001 6.1274 47 1 2.0143 -3.3433 5.8370 48 1 3.1988 -3.0121 4.5504 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121936499.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:25 Heat of formation + Delta-G solvation = -44.978806 kcal Electronic energy + Delta-G solvation = -24127.683735 eV Core-core repulsion = 20989.325103 eV Total energy + Delta-G solvation = -3138.358632 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.39642 -39.10563 -37.39910 -36.39893 -34.41737 -31.94201 -30.71713 -30.17651 -28.80238 -28.26366 -25.99998 -24.66835 -24.37699 -23.33737 -20.61413 -19.81974 -19.27268 -18.99441 -18.17019 -16.86222 -16.72984 -16.29118 -16.00302 -15.55181 -15.02815 -14.78386 -14.57632 -14.48363 -14.26191 -13.92141 -13.88691 -13.81808 -13.40875 -13.31152 -13.05358 -12.80133 -12.76882 -12.69434 -12.59144 -12.45569 -12.24145 -12.15334 -12.06329 -11.87599 -11.66660 -11.37725 -11.25061 -11.19736 -10.98666 -10.82003 -10.63500 -10.17475 -9.27064 -8.29226 -6.35063 1.37283 1.38993 1.48400 1.74881 2.29497 2.33584 2.93154 3.04720 3.65985 3.82029 3.90944 3.96723 4.01560 4.06221 4.18817 4.25876 4.42626 4.48567 4.59974 4.65585 4.70839 4.73914 4.78068 4.80894 4.86867 4.89128 4.92882 4.96982 4.99947 5.06437 5.10016 5.12974 5.14102 5.15317 5.17221 5.32797 5.34377 5.37306 5.45472 5.47204 5.55514 5.62739 5.70494 5.82228 6.22389 6.65952 6.75614 7.28016 7.49089 8.87440 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.010513 B = 0.008175 C = 0.005175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.804767 B = 3424.392703 C = 5408.947308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.104 4.104 3 C -0.094 4.094 4 C -0.116 4.116 5 C -0.145 4.145 6 C 0.121 3.879 7 N -0.594 5.594 8 C 0.222 3.778 9 C -0.531 4.531 10 H 0.026 0.974 11 C 0.019 3.981 12 N -0.944 5.944 13 Si 0.938 3.062 14 H -0.262 1.262 15 H -0.242 1.242 16 H -0.285 1.285 17 C 0.541 3.459 18 O -0.559 6.559 19 C -0.191 4.191 20 H 0.117 0.883 21 C -0.142 4.142 22 C -0.088 4.088 23 C -0.088 4.088 24 C -0.110 4.110 25 H 0.040 0.960 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.039 0.961 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.038 0.962 39 H 0.041 0.959 40 H 0.267 0.733 41 H 0.105 0.895 42 H 0.075 0.925 43 H 0.055 0.945 44 H 0.067 0.933 45 H 0.040 0.960 46 H 0.062 0.938 47 H 0.081 0.919 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.485 -12.037 -9.249 15.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.141 4.141 3 C -0.114 4.114 4 C -0.154 4.154 5 C -0.203 4.203 6 C -0.002 4.002 7 N -0.323 5.323 8 C 0.099 3.901 9 C -0.569 4.569 10 H 0.045 0.955 11 C -0.179 4.179 12 N -0.584 5.584 13 Si 0.761 3.239 14 H -0.186 1.186 15 H -0.165 1.165 16 H -0.211 1.211 17 C 0.331 3.669 18 O -0.439 6.439 19 C -0.211 4.211 20 H 0.135 0.865 21 C -0.180 4.180 22 C -0.089 4.089 23 C -0.145 4.145 24 C -0.167 4.167 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.123 0.877 42 H 0.093 0.907 43 H 0.074 0.926 44 H 0.085 0.915 45 H 0.059 0.941 46 H 0.081 0.919 47 H 0.099 0.901 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.954 -12.103 -9.340 15.571 hybrid contribution 0.886 0.888 0.437 1.328 sum -2.068 -11.216 -8.903 14.468 Atomic orbital electron populations 1.21665 0.95437 1.00868 1.00954 1.21387 0.96725 0.95451 1.00531 1.21508 0.99930 0.96016 0.93935 1.21535 1.00897 0.99078 0.93909 1.21746 1.01035 1.01209 0.96281 1.21520 0.97180 0.95847 0.85610 1.47866 1.20427 1.31131 1.32885 1.19542 0.81493 0.94305 0.94731 1.21478 0.93239 1.21009 1.21210 0.95519 1.25752 1.03473 0.94321 0.94396 1.70058 1.31828 1.27819 1.28645 0.85857 0.78862 0.78502 0.80716 1.18635 1.16490 1.21077 1.19751 0.85169 0.79636 0.82354 1.90585 1.21183 1.65314 1.66867 1.22332 0.99903 1.04881 0.94022 0.86537 1.23014 1.01889 0.99858 0.93236 1.21768 0.97800 0.89433 0.99888 1.21196 0.92769 1.00325 1.00248 1.21389 0.98626 0.95734 1.00960 0.94114 0.93246 0.92189 0.91655 0.94184 0.92018 0.91211 0.92128 0.92343 0.91684 0.92965 0.91243 0.91863 0.94382 0.94115 0.92389 0.87689 0.90662 0.92645 0.91458 0.94075 0.91944 0.90053 0.91556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.73 8.14 71.98 0.59 -3.15 16 2 C -0.10 -3.00 4.81 30.60 0.15 -2.85 16 3 C -0.09 -2.77 2.37 -10.79 -0.03 -2.80 16 4 C -0.12 -2.77 5.07 30.59 0.16 -2.62 16 5 C -0.15 -2.86 9.77 71.98 0.70 -2.15 16 6 C 0.12 4.40 4.90 86.38 0.42 4.83 16 7 N -0.59 -24.26 2.34 -826.16 -1.93 -26.20 16 8 C 0.22 9.80 4.06 85.63 0.35 10.15 16 9 C -0.53 -28.84 9.94 25.60 0.25 -28.59 16 10 H 0.03 1.68 8.06 -2.91 -0.02 1.65 16 11 C 0.02 1.05 5.47 84.66 0.46 1.51 16 12 N -0.94 -56.66 13.96 21.45 0.30 -56.36 16 13 Si 0.94 40.60 27.47 68.60 1.88 42.48 16 14 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 15 H -0.24 -9.49 6.54 99.48 0.65 -8.84 16 16 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 17 C 0.54 21.63 5.98 87.66 0.52 22.16 16 18 O -0.56 -22.39 8.88 -3.04 -0.03 -22.41 16 19 C -0.19 -6.94 5.01 -11.54 -0.06 -7.00 16 20 H 0.12 4.19 6.44 -2.39 -0.02 4.18 16 21 C -0.14 -5.00 9.52 30.60 0.29 -4.71 16 22 C -0.09 -2.64 2.70 -52.18 -0.14 -2.78 16 23 C -0.09 -2.62 8.09 71.98 0.58 -2.04 16 24 C -0.11 -2.50 9.85 71.98 0.71 -1.79 16 25 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.05 1.63 4.86 -2.39 -0.01 1.62 16 27 H 0.06 1.43 6.63 -2.39 -0.02 1.41 16 28 H 0.06 1.65 6.76 -2.39 -0.02 1.63 16 29 H 0.04 1.36 5.57 -2.39 -0.01 1.35 16 30 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.07 1.62 6.18 -2.39 -0.01 1.60 16 32 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.06 1.12 6.51 -2.39 -0.02 1.10 16 34 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.07 2.61 5.66 -2.39 -0.01 2.60 16 37 H 0.06 2.40 8.07 -2.39 -0.02 2.38 16 38 H 0.04 1.64 7.13 -2.39 -0.02 1.62 16 39 H 0.04 1.72 5.42 -2.39 -0.01 1.71 16 40 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 41 H 0.10 3.47 8.05 -2.39 -0.02 3.46 16 42 H 0.07 2.89 8.05 -2.39 -0.02 2.87 16 43 H 0.05 1.75 7.26 -2.39 -0.02 1.73 16 44 H 0.07 1.60 7.92 -2.39 -0.02 1.58 16 45 H 0.04 1.39 7.02 -2.38 -0.02 1.37 16 46 H 0.06 1.37 7.90 -2.38 -0.02 1.35 16 47 H 0.08 1.52 7.92 -2.39 -0.02 1.50 16 48 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -62.14 357.66 6.04 -56.09 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: 0.86 Total: 28.23 kcal Atomic # 6 Polarization: -26.79 SS G_CDS: 4.96 Total: -21.83 kcal Atomic # 7 Polarization: -80.93 SS G_CDS: -1.64 Total: -82.56 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.03 Total: -22.41 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 1.88 Total: 42.48 kcal Total: -62.14 6.04 -56.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121936499.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.115 kcal (2) G-P(sol) polarization free energy of solvation -62.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds