Wall clock time and date at job start Tue Mar 31 2020 06:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46770 * 2 1 4 4 C 1.53001 * 109.47253 * 239.99919 * 2 1 3 5 5 C 1.52995 * 109.47216 * 119.99666 * 2 1 3 6 6 C 1.53001 * 109.46978 * 60.00461 * 5 2 1 7 7 C 1.53009 * 109.46927 * 179.97438 * 6 5 2 8 8 C 1.50700 * 109.47004 * 179.97438 * 7 6 5 9 9 O 1.21295 * 119.99978 * 353.54079 * 8 7 6 10 10 N 1.34775 * 119.99961 * 173.53744 * 8 7 6 11 11 C 1.37092 * 119.99795 * 356.29337 * 10 8 7 12 12 H 1.08000 * 119.99837 * 232.08991 * 11 10 8 13 13 C 1.38947 * 120.00001 * 52.09324 * 11 10 8 14 14 N 1.31416 * 119.99942 * 26.89457 * 13 11 10 15 15 Si 1.86798 * 120.00020 * 206.88906 * 13 11 10 16 16 H 1.48497 * 109.47154 * 90.00181 * 15 13 11 17 17 H 1.48499 * 109.47226 * 209.99968 * 15 13 11 18 18 H 1.48499 * 109.47336 * 330.00090 * 15 13 11 19 19 C 1.46499 * 119.99992 * 176.02453 * 10 8 7 20 20 C 1.54272 * 110.02852 * 237.90695 * 19 10 8 21 21 C 1.54971 * 104.15743 * 217.13423 * 20 19 10 22 22 C 1.54884 * 102.77813 * 37.88759 * 21 20 19 23 23 C 1.53867 * 110.03720 * 120.68850 * 19 10 8 24 24 H 1.08996 * 109.47330 * 300.00041 * 1 2 3 25 25 H 1.08994 * 109.47390 * 60.00473 * 1 2 3 26 26 H 1.09006 * 109.46491 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47314 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47109 * 299.99876 * 3 2 1 29 29 H 1.08996 * 109.47227 * 59.99896 * 3 2 1 30 30 H 1.08997 * 109.46966 * 299.99882 * 4 2 1 31 31 H 1.09002 * 109.47097 * 59.99835 * 4 2 1 32 32 H 1.09003 * 109.47078 * 179.97438 * 4 2 1 33 33 H 1.09005 * 109.47069 * 300.00585 * 5 2 1 34 34 H 1.09002 * 109.47292 * 180.02562 * 5 2 1 35 35 H 1.08996 * 109.47227 * 59.99915 * 6 5 2 36 36 H 1.09003 * 109.47314 * 299.99692 * 6 5 2 37 37 H 1.09005 * 109.47071 * 60.00154 * 7 6 5 38 38 H 1.08989 * 109.46829 * 299.99976 * 7 6 5 39 39 H 0.96998 * 119.99456 * 184.89924 * 14 13 11 40 40 H 1.09008 * 110.01647 * 359.29533 * 19 10 8 41 41 H 1.09000 * 110.48846 * 335.78134 * 20 19 10 42 42 H 1.09005 * 110.48644 * 98.42687 * 20 19 10 43 43 H 1.09005 * 110.71708 * 279.57185 * 21 20 19 44 44 H 1.08998 * 110.91688 * 156.29770 * 21 20 19 45 45 H 1.09001 * 110.48663 * 203.40844 * 22 21 20 46 46 H 1.09002 * 110.59820 * 80.81607 * 22 21 20 47 47 H 1.09000 * 110.03457 * 238.56822 * 23 19 10 48 48 H 1.09005 * 110.03138 * 359.97438 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7211 1.2492 6 6 1.5301 -2.1637 1.2492 7 6 2.0407 -2.8851 2.4983 8 6 1.5379 -4.3057 2.4986 9 8 0.7466 -4.6692 1.6542 10 7 1.9676 -5.1724 3.4371 11 6 2.9188 -4.7839 4.3447 12 1 3.8057 -5.3834 4.4874 13 6 2.7417 -3.6189 5.0809 14 7 1.5294 -3.1775 5.3310 15 14 4.2269 -2.6802 5.7155 16 1 4.6504 -1.6804 4.7025 17 1 3.8705 -1.9849 6.9783 18 1 5.3404 -3.6291 5.9701 19 6 1.4140 -6.5277 3.4909 20 6 0.7860 -6.7872 4.8759 21 6 1.1235 -8.2702 5.1733 22 6 2.5551 -8.4172 4.6007 23 6 2.5380 -7.5637 3.3157 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3632 -1.0278 0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6767 -1.7489 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.1301 -0.7208 -1.2494 33 1 1.6766 -0.2073 2.1392 34 1 3.1300 -0.7208 1.2495 35 1 1.8935 -2.6775 0.3593 36 1 0.4401 -2.1638 1.2493 37 1 1.6776 -2.3714 3.3885 38 1 3.1306 -2.8850 2.4978 39 1 1.4063 -2.3281 5.7829 40 1 0.6634 -6.6554 2.7108 41 1 1.2345 -6.1362 5.6263 42 1 -0.2936 -6.6409 4.8388 43 1 0.4306 -8.9344 4.6566 44 1 1.1146 -8.4638 6.2459 45 1 2.7658 -9.4599 4.3632 46 1 3.2915 -8.0309 5.3054 47 1 2.3326 -8.1948 2.4510 48 1 3.4955 -7.0581 3.1901 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125010101.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:02 Heat of formation + Delta-G solvation = -74.906271 kcal Electronic energy + Delta-G solvation = -23673.428983 eV Core-core repulsion = 20533.772599 eV Total energy + Delta-G solvation = -3139.656384 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -38.97891 -37.81327 -36.55416 -34.08045 -32.23901 -31.26445 -27.91231 -27.53468 -27.10520 -27.06084 -26.00706 -24.56663 -21.67287 -19.96554 -19.27374 -19.19823 -18.34038 -16.36935 -15.69571 -15.21966 -14.88067 -14.60045 -14.50440 -14.22359 -13.97442 -13.72951 -13.29828 -13.02894 -12.59277 -12.43282 -12.26007 -11.91193 -11.61582 -11.49213 -11.42872 -11.29827 -11.28547 -10.94512 -10.83564 -10.69936 -10.57142 -10.45669 -10.40654 -10.35280 -10.31265 -10.01286 -9.98796 -9.94553 -9.72135 -9.60302 -8.66230 -8.18146 -7.27275 -6.38345 -4.16580 3.12917 3.23364 3.24218 4.09472 4.22433 4.81094 4.85620 5.05337 5.06357 5.10575 5.40378 5.41329 5.58931 5.67577 5.71689 5.74858 5.88063 5.95420 5.97351 6.06234 6.06633 6.11781 6.20878 6.25011 6.25541 6.34338 6.35621 6.38405 6.43200 6.47888 6.51610 6.53967 6.57266 6.61236 6.67391 6.76137 6.77537 6.90330 6.99155 7.12645 7.18431 7.30583 7.37182 7.48515 8.05939 8.69124 8.96230 9.67998 10.11159 10.62356 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017765 B = 0.005307 C = 0.004481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.711731 B = 5274.287248 C = 6246.866564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.070 4.070 3 C -0.140 4.140 4 C -0.143 4.143 5 C -0.108 4.108 6 C -0.103 4.103 7 C -0.129 4.129 8 C 0.510 3.490 9 O -0.616 6.616 10 N -0.449 5.449 11 C -0.335 4.335 12 H 0.081 0.919 13 C 0.056 3.944 14 N -0.844 5.844 15 Si 0.892 3.108 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.269 1.269 19 C 0.132 3.868 20 C -0.120 4.120 21 C -0.123 4.123 22 C -0.116 4.116 23 C -0.127 4.127 24 H 0.052 0.948 25 H 0.047 0.953 26 H 0.063 0.937 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.106 0.894 38 H 0.073 0.927 39 H 0.268 0.732 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.049 0.951 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.051 0.949 46 H 0.064 0.936 47 H 0.051 0.949 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.740 2.437 -4.420 5.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.070 4.070 3 C -0.197 4.197 4 C -0.200 4.200 5 C -0.145 4.145 6 C -0.141 4.141 7 C -0.169 4.169 8 C 0.301 3.699 9 O -0.503 6.503 10 N -0.168 5.168 11 C -0.462 4.462 12 H 0.098 0.902 13 C -0.151 4.151 14 N -0.479 5.479 15 Si 0.717 3.283 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.193 1.193 19 C 0.027 3.973 20 C -0.159 4.159 21 C -0.161 4.161 22 C -0.154 4.154 23 C -0.165 4.165 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.124 0.876 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.110 0.890 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.083 0.917 47 H 0.069 0.931 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.252 2.347 -4.664 5.370 hybrid contribution 0.722 0.612 0.614 1.128 sum 1.974 2.959 -4.050 5.390 Atomic orbital electron populations 1.21924 0.94840 1.02385 1.00875 1.20539 0.95662 0.94860 0.95910 1.21873 1.00730 0.95921 1.01176 1.21923 1.00677 1.00930 0.96451 1.21658 1.00141 0.96321 0.96422 1.21458 1.01074 0.93458 0.98127 1.21695 1.01258 0.94184 0.99747 1.20435 0.81759 0.87726 0.79938 1.90473 1.39421 1.79935 1.40426 1.43475 1.37003 1.09372 1.26994 1.19099 0.98882 1.09491 1.18756 0.90151 1.25450 0.96229 0.99430 0.93997 1.70163 1.20892 1.19856 1.37022 0.86501 0.82899 0.80425 0.78447 1.19790 1.21063 1.19295 1.21561 0.94290 0.84606 0.96804 1.22599 0.99392 0.94997 0.98876 1.22453 0.96467 0.97595 0.99563 1.22253 0.97260 0.98255 0.97611 1.22399 1.00499 0.97079 0.96526 0.92920 0.93438 0.91784 0.92938 0.93175 0.92890 0.91835 0.93418 0.92987 0.92309 0.92453 0.92390 0.91801 0.87606 0.90843 0.92149 0.90619 0.89002 0.93228 0.92636 0.92482 0.93057 0.91728 0.93063 0.91155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 8.12 37.16 0.30 -1.63 16 2 C -0.07 -0.95 0.80 -154.51 -0.12 -1.07 16 3 C -0.14 -1.65 8.47 37.16 0.31 -1.34 16 4 C -0.14 -1.87 8.12 37.16 0.30 -1.57 16 5 C -0.11 -1.74 4.27 -26.73 -0.11 -1.85 16 6 C -0.10 -2.00 3.82 -26.73 -0.10 -2.10 16 7 C -0.13 -2.92 3.86 -27.88 -0.11 -3.03 16 8 C 0.51 13.05 7.26 -10.99 -0.08 12.97 16 9 O -0.62 -16.90 15.34 5.54 0.09 -16.82 16 10 N -0.45 -11.08 2.37 -106.54 -0.25 -11.33 16 11 C -0.33 -8.19 6.79 -14.94 -0.10 -8.29 16 12 H 0.08 1.95 7.29 -52.49 -0.38 1.57 16 13 C 0.06 1.36 3.35 -17.47 -0.06 1.31 16 14 N -0.84 -21.49 11.58 55.50 0.64 -20.84 16 15 Si 0.89 18.82 29.63 -169.99 -5.04 13.79 16 16 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 17 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 18 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 19 C 0.13 2.94 3.29 -66.81 -0.22 2.72 16 20 C -0.12 -2.51 6.42 -25.03 -0.16 -2.67 16 21 C -0.12 -2.06 6.91 -24.70 -0.17 -2.23 16 22 C -0.12 -1.92 6.83 -25.07 -0.17 -2.10 16 23 C -0.13 -2.41 6.26 -25.61 -0.16 -2.57 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.95 6.43 -51.93 -0.33 0.62 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.91 6.43 -51.93 -0.33 0.58 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.06 1.13 6.43 -51.93 -0.33 0.80 16 36 H 0.06 1.31 6.32 -51.93 -0.33 0.98 16 37 H 0.11 2.54 5.46 -51.93 -0.28 2.25 16 38 H 0.07 1.63 7.75 -51.94 -0.40 1.23 16 39 H 0.27 6.50 8.32 -40.82 -0.34 6.16 16 40 H 0.08 1.81 6.95 -51.92 -0.36 1.44 16 41 H 0.09 2.17 7.02 -51.93 -0.36 1.80 16 42 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.07 1.42 6.95 -51.93 -0.36 1.05 16 LS Contribution 362.28 15.07 5.46 5.46 Total: -1.00 -26.95 362.28 -8.71 -35.67 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -8.96 Total: 7.54 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -0.65 Total: -13.46 kcal Atomic # 7 Polarization: -32.56 SS G_CDS: 0.39 Total: -32.17 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: 0.09 Total: -16.82 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.04 Total: 13.79 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -26.95 -8.71 -35.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125010101.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.241 kcal (2) G-P(sol) polarization free energy of solvation -26.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds