Wall clock time and date at job start Tue Mar 31 2020 06:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46770 * 2 1 4 4 C 1.53001 * 109.47253 * 239.99919 * 2 1 3 5 5 C 1.52995 * 109.47216 * 119.99666 * 2 1 3 6 6 C 1.53001 * 109.46978 * 60.00461 * 5 2 1 7 7 C 1.53009 * 109.46927 * 179.97438 * 6 5 2 8 8 C 1.50700 * 109.47004 * 179.97438 * 7 6 5 9 9 O 1.21295 * 119.99978 * 353.54079 * 8 7 6 10 10 N 1.34775 * 119.99961 * 173.53744 * 8 7 6 11 11 C 1.37092 * 119.99795 * 356.29337 * 10 8 7 12 12 H 1.08000 * 119.99837 * 232.08991 * 11 10 8 13 13 C 1.38947 * 120.00001 * 52.09324 * 11 10 8 14 14 N 1.31416 * 119.99942 * 26.89457 * 13 11 10 15 15 Si 1.86798 * 120.00020 * 206.88906 * 13 11 10 16 16 H 1.48497 * 109.47154 * 90.00181 * 15 13 11 17 17 H 1.48499 * 109.47226 * 209.99968 * 15 13 11 18 18 H 1.48499 * 109.47336 * 330.00090 * 15 13 11 19 19 C 1.46499 * 119.99992 * 176.02453 * 10 8 7 20 20 C 1.54272 * 110.02852 * 237.90695 * 19 10 8 21 21 C 1.54971 * 104.15743 * 217.13423 * 20 19 10 22 22 C 1.54884 * 102.77813 * 37.88759 * 21 20 19 23 23 C 1.53867 * 110.03720 * 120.68850 * 19 10 8 24 24 H 1.08996 * 109.47330 * 300.00041 * 1 2 3 25 25 H 1.08994 * 109.47390 * 60.00473 * 1 2 3 26 26 H 1.09006 * 109.46491 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47314 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47109 * 299.99876 * 3 2 1 29 29 H 1.08996 * 109.47227 * 59.99896 * 3 2 1 30 30 H 1.08997 * 109.46966 * 299.99882 * 4 2 1 31 31 H 1.09002 * 109.47097 * 59.99835 * 4 2 1 32 32 H 1.09003 * 109.47078 * 179.97438 * 4 2 1 33 33 H 1.09005 * 109.47069 * 300.00585 * 5 2 1 34 34 H 1.09002 * 109.47292 * 180.02562 * 5 2 1 35 35 H 1.08996 * 109.47227 * 59.99915 * 6 5 2 36 36 H 1.09003 * 109.47314 * 299.99692 * 6 5 2 37 37 H 1.09005 * 109.47071 * 60.00154 * 7 6 5 38 38 H 1.08989 * 109.46829 * 299.99976 * 7 6 5 39 39 H 0.96998 * 119.99456 * 184.89924 * 14 13 11 40 40 H 1.09008 * 110.01647 * 359.29533 * 19 10 8 41 41 H 1.09000 * 110.48846 * 335.78134 * 20 19 10 42 42 H 1.09005 * 110.48644 * 98.42687 * 20 19 10 43 43 H 1.09005 * 110.71708 * 279.57185 * 21 20 19 44 44 H 1.08998 * 110.91688 * 156.29770 * 21 20 19 45 45 H 1.09001 * 110.48663 * 203.40844 * 22 21 20 46 46 H 1.09002 * 110.59820 * 80.81607 * 22 21 20 47 47 H 1.09000 * 110.03457 * 238.56822 * 23 19 10 48 48 H 1.09005 * 110.03138 * 359.97438 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7211 1.2492 6 6 1.5301 -2.1637 1.2492 7 6 2.0407 -2.8851 2.4983 8 6 1.5379 -4.3057 2.4986 9 8 0.7466 -4.6692 1.6542 10 7 1.9676 -5.1724 3.4371 11 6 2.9188 -4.7839 4.3447 12 1 3.8057 -5.3834 4.4874 13 6 2.7417 -3.6189 5.0809 14 7 1.5294 -3.1775 5.3310 15 14 4.2269 -2.6802 5.7155 16 1 4.6504 -1.6804 4.7025 17 1 3.8705 -1.9849 6.9783 18 1 5.3404 -3.6291 5.9701 19 6 1.4140 -6.5277 3.4909 20 6 0.7860 -6.7872 4.8759 21 6 1.1235 -8.2702 5.1733 22 6 2.5551 -8.4172 4.6007 23 6 2.5380 -7.5637 3.3157 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3632 -1.0278 0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6767 -1.7489 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.1301 -0.7208 -1.2494 33 1 1.6766 -0.2073 2.1392 34 1 3.1300 -0.7208 1.2495 35 1 1.8935 -2.6775 0.3593 36 1 0.4401 -2.1638 1.2493 37 1 1.6776 -2.3714 3.3885 38 1 3.1306 -2.8850 2.4978 39 1 1.4063 -2.3281 5.7829 40 1 0.6634 -6.6554 2.7108 41 1 1.2345 -6.1362 5.6263 42 1 -0.2936 -6.6409 4.8388 43 1 0.4306 -8.9344 4.6566 44 1 1.1146 -8.4638 6.2459 45 1 2.7658 -9.4599 4.3632 46 1 3.2915 -8.0309 5.3054 47 1 2.3326 -8.1948 2.4510 48 1 3.4955 -7.0581 3.1901 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125010101.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:01 Heat of formation + Delta-G solvation = -86.339785 kcal Electronic energy + Delta-G solvation = -23673.924777 eV Core-core repulsion = 20533.772599 eV Total energy + Delta-G solvation = -3140.152178 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.83152 -39.09094 -38.21736 -35.98336 -33.83579 -33.12070 -29.47623 -29.12710 -28.13854 -28.12527 -27.63274 -26.40420 -23.23234 -21.43763 -21.10986 -20.95888 -19.53136 -18.24610 -17.45969 -17.09431 -16.50126 -16.18677 -15.94769 -15.68718 -15.34711 -14.92503 -14.82977 -14.59511 -14.21831 -14.13101 -13.51652 -13.37238 -13.20601 -13.04318 -12.81755 -12.65634 -12.54288 -12.47727 -12.39026 -12.23560 -12.21294 -12.05630 -11.89236 -11.83496 -11.68356 -11.41480 -11.36206 -11.30174 -11.26870 -11.24444 -10.56222 -10.15721 -9.21074 -8.28455 -6.12867 1.43787 1.49887 1.57057 2.18871 2.35240 2.96424 3.06696 3.84861 3.86768 3.91143 3.94264 3.96412 4.17551 4.30993 4.42915 4.49093 4.59597 4.67325 4.71714 4.75375 4.78418 4.78746 4.82465 4.90255 4.92929 4.94654 4.94916 5.04255 5.06788 5.09360 5.11504 5.15507 5.16931 5.23383 5.24391 5.34478 5.41361 5.42026 5.51040 5.51316 5.56465 5.60417 5.63132 5.65115 6.15274 6.73899 7.03849 7.70580 8.16005 8.73299 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017765 B = 0.005307 C = 0.004481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.711731 B = 5274.287248 C = 6246.866564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.069 4.069 3 C -0.135 4.135 4 C -0.141 4.141 5 C -0.102 4.102 6 C -0.091 4.091 7 C -0.121 4.121 8 C 0.488 3.512 9 O -0.647 6.647 10 N -0.452 5.452 11 C -0.346 4.346 12 H 0.082 0.918 13 C 0.028 3.972 14 N -0.874 5.874 15 Si 0.951 3.049 16 H -0.264 1.264 17 H -0.286 1.286 18 H -0.261 1.261 19 C 0.118 3.882 20 C -0.117 4.117 21 C -0.111 4.111 22 C -0.107 4.107 23 C -0.121 4.121 24 H 0.051 0.949 25 H 0.067 0.933 26 H 0.041 0.959 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.043 0.957 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.045 0.955 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.270 0.730 40 H 0.051 0.949 41 H 0.061 0.939 42 H 0.037 0.963 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.086 0.914 46 H 0.060 0.940 47 H 0.065 0.935 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.185 2.666 -4.378 6.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.069 4.069 3 C -0.192 4.192 4 C -0.198 4.198 5 C -0.139 4.139 6 C -0.129 4.129 7 C -0.160 4.160 8 C 0.280 3.720 9 O -0.536 6.536 10 N -0.170 5.170 11 C -0.474 4.474 12 H 0.100 0.900 13 C -0.177 4.177 14 N -0.509 5.509 15 Si 0.774 3.226 16 H -0.189 1.189 17 H -0.212 1.212 18 H -0.185 1.185 19 C 0.014 3.986 20 C -0.155 4.155 21 C -0.149 4.149 22 C -0.145 4.145 23 C -0.159 4.159 24 H 0.070 0.930 25 H 0.086 0.914 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.111 0.889 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.056 0.944 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.104 0.896 46 H 0.079 0.921 47 H 0.084 0.916 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.712 2.557 -4.608 5.926 hybrid contribution 0.206 0.489 0.620 0.816 sum 2.918 3.046 -3.988 5.804 Atomic orbital electron populations 1.21913 0.94948 1.01222 1.01867 1.20545 0.95600 0.96051 0.94705 1.21825 1.01097 0.94209 1.02114 1.21904 1.01056 0.99889 0.96978 1.21615 1.00388 0.94085 0.97850 1.21342 0.99840 0.95407 0.96340 1.21632 1.01125 0.92639 1.00629 1.21052 0.81962 0.89083 0.79935 1.90432 1.40907 1.80683 1.41610 1.43693 1.36664 1.10125 1.26519 1.19251 0.98973 1.10210 1.18937 0.89992 1.26091 0.98284 0.99549 0.93791 1.70235 1.22844 1.20159 1.37682 0.85590 0.79903 0.79281 0.77819 1.18944 1.21212 1.18513 1.21807 0.95250 0.84687 0.96881 1.22487 0.98167 0.97804 0.97043 1.22420 0.96977 0.94379 1.01115 1.22224 0.96875 0.99604 0.95790 1.22335 0.98189 0.96563 0.98824 0.92992 0.91386 0.94018 0.92351 0.91471 0.92772 0.93838 0.91492 0.92381 0.92725 0.91849 0.92856 0.93602 0.88925 0.90659 0.91963 0.93021 0.91983 0.94443 0.90692 0.90606 0.89580 0.92137 0.91591 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 8.12 71.98 0.58 -3.17 16 2 C -0.07 -1.80 0.80 -52.18 -0.04 -1.84 16 3 C -0.14 -2.85 8.47 71.98 0.61 -2.24 16 4 C -0.14 -3.51 8.12 71.98 0.58 -2.93 16 5 C -0.10 -3.25 4.27 30.59 0.13 -3.12 16 6 C -0.09 -3.65 3.82 30.60 0.12 -3.54 16 7 C -0.12 -5.62 3.86 29.85 0.12 -5.50 16 8 C 0.49 25.99 7.26 87.66 0.64 26.63 16 9 O -0.65 -37.27 15.34 -3.08 -0.05 -37.32 16 10 N -0.45 -23.00 2.37 -609.38 -1.44 -24.44 16 11 C -0.35 -17.19 6.79 84.04 0.57 -16.62 16 12 H 0.08 4.00 7.29 -2.91 -0.02 3.98 16 13 C 0.03 1.38 3.35 84.93 0.28 1.66 16 14 N -0.87 -45.36 11.58 21.66 0.25 -45.11 16 15 Si 0.95 38.20 29.63 68.60 2.03 40.23 16 16 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 17 H -0.29 -11.55 7.11 99.48 0.71 -10.84 16 18 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 19 C 0.12 5.38 3.29 45.72 0.15 5.53 16 20 C -0.12 -4.94 6.42 31.70 0.20 -4.73 16 21 C -0.11 -3.50 6.91 31.91 0.22 -3.28 16 22 C -0.11 -3.30 6.83 31.67 0.22 -3.08 16 23 C -0.12 -4.52 6.26 31.32 0.20 -4.33 16 24 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.04 1.27 6.43 -2.38 -0.02 1.26 16 27 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.04 1.24 6.43 -2.39 -0.02 1.23 16 31 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.05 1.77 8.14 -2.38 -0.02 1.76 16 34 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.05 2.15 6.43 -2.39 -0.02 2.14 16 36 H 0.05 1.98 6.32 -2.39 -0.02 1.96 16 37 H 0.09 4.58 5.46 -2.38 -0.01 4.57 16 38 H 0.08 3.40 7.75 -2.39 -0.02 3.39 16 39 H 0.27 13.32 8.32 -92.71 -0.77 12.54 16 40 H 0.05 2.57 6.95 -2.38 -0.02 2.56 16 41 H 0.06 3.00 7.02 -2.39 -0.02 2.98 16 42 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 43 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 44 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 48 H 0.06 2.27 6.95 -2.38 -0.02 2.25 16 Total: -1.00 -59.83 362.28 6.27 -53.56 By element: Atomic # 1 Polarization: 32.75 SS G_CDS: 0.89 Total: 33.65 kcal Atomic # 6 Polarization: -25.14 SS G_CDS: 4.58 Total: -20.56 kcal Atomic # 7 Polarization: -68.36 SS G_CDS: -1.19 Total: -69.56 kcal Atomic # 8 Polarization: -37.27 SS G_CDS: -0.05 Total: -37.32 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 2.03 Total: 40.23 kcal Total: -59.83 6.27 -53.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125010101.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.777 kcal (2) G-P(sol) polarization free energy of solvation -59.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds