Wall clock time and date at job start Tue Mar 31 2020 05:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99933 * 2 1 4 4 H 1.48497 * 109.47332 * 270.00620 * 3 2 1 5 5 H 1.48504 * 109.47000 * 30.00792 * 3 2 1 6 6 H 1.48505 * 109.46789 * 150.00171 * 3 2 1 7 7 C 1.37882 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99905 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99836 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47226 * 180.02562 * 9 7 2 11 11 N 1.46895 * 109.47473 * 179.97438 * 10 9 7 12 12 C 1.46847 * 110.99982 * 169.99767 * 11 10 9 13 13 C 1.53034 * 109.51345 * 185.84805 * 12 11 10 14 14 C 1.53123 * 109.27992 * 300.80438 * 13 12 11 15 15 O 1.42895 * 109.57776 * 177.60313 * 14 13 12 16 16 C 1.42898 * 114.00215 * 90.29612 * 15 14 13 17 17 C 1.53002 * 109.47336 * 270.00241 * 16 15 14 18 18 C 1.53001 * 109.47233 * 179.97438 * 17 16 15 19 19 C 1.52992 * 109.47115 * 59.99739 * 18 17 16 20 20 C 1.52996 * 109.47576 * 300.00106 * 19 18 17 21 21 C 1.52997 * 109.47358 * 150.00121 * 16 15 14 22 22 C 1.53127 * 109.15019 * 57.67185 * 14 13 12 23 23 C 1.46843 * 110.99970 * 294.21132 * 11 10 9 24 24 H 0.97006 * 120.00372 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47296 * 60.00789 * 9 7 2 26 26 H 1.09003 * 109.47603 * 300.00547 * 9 7 2 27 27 H 1.09000 * 109.46678 * 59.99995 * 10 9 7 28 28 H 1.09003 * 109.46937 * 300.00539 * 10 9 7 29 29 H 1.09002 * 109.46481 * 305.85957 * 12 11 10 30 30 H 1.08994 * 109.46283 * 65.83811 * 12 11 10 31 31 H 1.08997 * 109.50952 * 60.75924 * 13 12 11 32 32 H 1.08998 * 109.50459 * 180.87821 * 13 12 11 33 33 H 1.09003 * 109.53012 * 297.76758 * 14 13 12 34 34 H 1.08997 * 109.46811 * 30.00024 * 16 15 14 35 35 H 1.08999 * 109.47411 * 299.99975 * 17 16 15 36 36 H 1.09003 * 109.46948 * 59.99461 * 17 16 15 37 37 H 1.08997 * 109.46913 * 299.99781 * 18 17 16 38 38 H 1.09000 * 109.47181 * 180.02562 * 18 17 16 39 39 H 1.08999 * 109.47014 * 179.97438 * 19 18 17 40 40 H 1.08999 * 109.46738 * 60.00448 * 19 18 17 41 41 H 1.08997 * 109.46948 * 300.00261 * 20 19 18 42 42 H 1.08997 * 109.47646 * 180.02562 * 20 19 18 43 43 H 1.09000 * 109.47321 * 300.00466 * 21 16 15 44 44 H 1.09006 * 109.47289 * 59.99951 * 21 16 15 45 45 H 1.08997 * 109.49981 * 182.39822 * 22 14 13 46 46 H 1.08999 * 109.50124 * 62.28085 * 22 14 13 47 47 H 1.08993 * 109.46313 * 294.17341 * 23 11 10 48 48 H 1.09000 * 109.46480 * 54.15451 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5107 -4.9343 0.0001 12 6 2.4168 -6.0651 -0.2380 13 6 1.6017 -7.3530 -0.3757 14 6 0.7966 -7.5813 0.9067 15 8 -0.0096 -8.7524 0.7638 16 6 0.6316 -9.9554 1.1923 17 6 1.3816 -10.5811 0.0145 18 6 2.0687 -11.8688 0.4735 19 6 1.0163 -12.8526 0.9886 20 6 0.2664 -12.2270 2.1664 21 6 -0.4211 -10.9391 1.7070 22 6 -0.1032 -6.3680 1.1576 23 6 0.7612 -5.1085 1.2507 24 1 -0.4851 0.8401 0.0004 25 1 0.6241 -2.5568 -0.8903 26 1 0.6246 -2.5571 0.8896 27 1 2.8718 -3.6043 0.8895 28 1 2.8719 -3.6043 -0.8905 29 1 2.9803 -5.8922 -1.1549 30 1 3.1071 -6.1601 0.6001 31 1 0.9207 -7.2640 -1.2220 32 1 2.2753 -8.1946 -0.5368 33 1 1.4787 -7.7090 1.7473 34 1 1.3365 -9.7265 1.9915 35 1 0.6767 -10.8100 -0.7848 36 1 2.1316 -9.8802 -0.3522 37 1 2.7736 -11.6395 1.2726 38 1 2.6033 -12.3143 -0.3654 39 1 1.5058 -13.7701 1.3152 40 1 0.3114 -13.0819 0.1895 41 1 0.9714 -11.9977 2.9654 42 1 -0.4830 -12.9281 2.5337 43 1 -0.9554 -10.4934 2.5460 44 1 -1.1261 -11.1680 0.9077 45 1 -0.6476 -6.5058 2.0918 46 1 -0.8110 -6.2637 0.3353 47 1 1.4594 -5.2079 2.0817 48 1 0.1220 -4.2410 1.4150 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125542135.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:29 Heat of formation + Delta-G solvation = -80.006430 kcal Electronic energy + Delta-G solvation = -22670.421024 eV Core-core repulsion = 19530.543480 eV Total energy + Delta-G solvation = -3139.877543 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.76281 -38.33869 -36.38074 -33.57747 -32.08686 -31.13296 -30.65366 -29.74382 -28.64348 -24.80226 -23.30385 -22.96325 -22.43966 -22.18326 -20.44831 -20.03031 -19.35816 -16.93722 -16.53853 -16.03637 -14.94231 -14.91213 -14.70255 -14.63699 -14.42819 -14.20359 -13.82054 -13.67890 -13.34556 -12.88126 -12.77267 -12.46893 -12.39864 -12.20493 -11.74150 -11.57215 -11.39658 -11.26845 -11.14239 -10.99592 -10.96335 -10.88681 -10.79598 -10.56985 -10.50122 -10.31276 -10.12681 -9.78842 -9.35827 -9.29598 -9.08900 -8.31374 -7.69712 -5.98022 -4.00410 3.33039 3.39103 3.42075 3.54444 4.37128 4.43900 4.46708 4.55441 4.67019 4.89775 4.90313 4.99740 5.01897 5.06028 5.20346 5.21474 5.25536 5.31062 5.37768 5.43035 5.48219 5.60417 5.64273 5.69210 5.76568 5.79153 5.83044 5.88516 5.93943 6.00170 6.01600 6.04365 6.10376 6.19582 6.27346 6.33945 6.38573 6.54026 6.57595 6.98694 7.33763 7.53107 7.60757 7.82124 7.91975 8.10522 8.45238 9.06861 9.63052 11.13311 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.051275 B = 0.002693 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.941108 B =10394.219616 C =10716.835135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.028 3.972 10 C 0.063 3.937 11 N -0.539 5.539 12 C 0.057 3.943 13 C -0.137 4.137 14 C 0.093 3.907 15 O -0.375 6.375 16 C 0.091 3.909 17 C -0.146 4.146 18 C -0.118 4.118 19 C -0.122 4.122 20 C -0.117 4.117 21 C -0.117 4.117 22 C -0.112 4.112 23 C 0.058 3.942 24 H 0.260 0.740 25 H 0.025 0.975 26 H 0.017 0.983 27 H 0.019 0.981 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.024 0.976 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.067 0.933 46 H 0.079 0.921 47 H 0.025 0.975 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.176 -25.025 3.442 25.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.063 4.063 11 N -0.263 5.263 12 C -0.072 4.072 13 C -0.175 4.175 14 C 0.035 3.965 15 O -0.294 6.294 16 C 0.033 3.967 17 C -0.183 4.183 18 C -0.156 4.156 19 C -0.159 4.159 20 C -0.154 4.154 21 C -0.154 4.154 22 C -0.149 4.149 23 C -0.070 4.070 24 H 0.070 0.930 25 H 0.043 0.957 26 H 0.035 0.965 27 H 0.037 0.963 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.042 0.958 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.098 0.902 47 H 0.043 0.957 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.503 -24.884 2.990 25.108 hybrid contribution 1.369 0.947 0.701 1.806 sum 2.871 -23.937 3.691 24.389 Atomic orbital electron populations 1.69971 1.06005 1.26562 1.50651 1.24995 0.94833 0.99162 0.95343 0.86601 0.79787 0.83526 0.78104 1.20641 1.21234 1.19969 1.21195 0.92962 0.91089 1.50849 0.92837 1.19105 0.93979 0.90072 0.97819 1.22322 0.96738 0.88352 0.98907 1.62026 1.27462 1.02416 1.34439 1.22013 0.93965 0.90861 1.00327 1.22232 0.99225 0.96846 0.99217 1.22271 0.92376 0.85378 0.96459 1.87939 1.41454 1.14447 1.85542 1.22130 0.94083 0.85345 0.95122 1.22225 1.00043 0.97090 0.98955 1.21508 0.97803 0.95467 1.00804 1.21569 0.98107 0.98082 0.98178 1.21513 0.99516 0.96463 0.97943 1.21602 0.97900 0.94552 1.01376 1.21678 0.98372 0.92281 1.02618 1.22075 0.96810 0.97949 0.90190 0.92998 0.95665 0.96461 0.96308 0.92079 0.90834 0.95802 0.90271 0.91791 0.92954 0.92598 0.91147 0.91264 0.92073 0.91788 0.92032 0.91818 0.91963 0.91552 0.91382 0.91126 0.91445 0.90188 0.95708 0.88896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.04 13.29 55.43 0.74 -26.30 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.22 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.03 0.72 4.90 -27.88 -0.14 0.59 16 10 C 0.06 1.36 4.90 -3.83 -0.02 1.34 16 11 N -0.54 -10.00 4.66 -234.68 -1.09 -11.09 16 12 C 0.06 0.86 5.46 -3.84 -0.02 0.84 16 13 C -0.14 -1.83 5.47 -26.65 -0.15 -1.98 16 14 C 0.09 1.23 2.68 -26.60 -0.07 1.16 16 15 O -0.37 -4.90 9.67 -35.23 -0.34 -5.24 16 16 C 0.09 0.94 2.61 -26.73 -0.07 0.87 16 17 C -0.15 -1.34 5.34 -26.73 -0.14 -1.48 16 18 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 19 C -0.12 -0.83 5.92 -26.74 -0.16 -0.98 16 20 C -0.12 -0.82 5.93 -26.71 -0.16 -0.98 16 21 C -0.12 -1.04 5.58 -26.71 -0.15 -1.19 16 22 C -0.11 -1.65 5.75 -26.64 -0.15 -1.80 16 23 C 0.06 1.00 5.29 -3.83 -0.02 0.98 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.02 0.47 6.43 -51.93 -0.33 0.14 16 27 H 0.02 0.40 8.12 -51.93 -0.42 -0.02 16 28 H 0.06 1.29 7.99 -51.93 -0.41 0.87 16 29 H 0.07 1.08 8.02 -51.93 -0.42 0.67 16 30 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.06 0.73 5.61 -51.93 -0.29 0.44 16 33 H 0.05 0.67 7.37 -51.93 -0.38 0.28 16 34 H 0.06 0.56 7.37 -51.93 -0.38 0.18 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.66 5.55 -51.93 -0.29 0.38 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.09 1.79 6.21 -51.93 -0.32 1.47 16 LS Contribution 359.61 15.07 5.42 5.42 Total: -1.00 -30.02 359.61 -11.25 -41.27 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -9.14 Total: -3.50 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -1.81 Total: -17.31 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: -0.36 Total: -37.39 kcal Atomic # 8 Polarization: -4.90 SS G_CDS: -0.34 Total: -5.24 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.02 -11.25 -41.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125542135.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.735 kcal (2) G-P(sol) polarization free energy of solvation -30.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds