Wall clock time and date at job start Tue Mar 31 2020 06:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47091 * 2 1 4 4 C 1.53003 * 109.47133 * 64.99556 * 3 2 1 5 5 C 1.53001 * 109.46976 * 184.90333 * 4 3 2 6 6 C 1.53002 * 109.47091 * 184.99602 * 3 2 1 7 7 N 1.46500 * 109.47114 * 64.86740 * 6 3 2 8 8 C 1.46493 * 120.00302 * 84.10297 * 7 6 3 9 9 C 1.50700 * 109.47719 * 264.42015 * 8 7 6 10 10 H 1.08000 * 119.99741 * 4.87984 * 9 8 7 11 11 C 1.37876 * 120.00282 * 184.88471 * 9 8 7 12 12 N 1.31513 * 119.99744 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99983 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46826 * 60.00158 * 13 11 9 15 15 H 1.48496 * 109.46844 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47356 * 300.00016 * 13 11 9 17 17 C 1.34773 * 119.99715 * 263.83600 * 7 6 3 18 18 O 1.21283 * 120.00206 * 0.26842 * 17 7 6 19 19 C 1.50697 * 120.00043 * 180.27729 * 17 7 6 20 20 H 1.09000 * 115.55121 * 34.41018 * 19 17 7 21 21 C 1.53007 * 117.49579 * 248.74393 * 19 17 7 22 22 C 1.53007 * 117.50099 * 180.08489 * 19 17 7 23 23 C 1.52992 * 117.49795 * 214.97606 * 22 19 17 24 24 C 1.53000 * 117.49460 * 359.97438 * 22 19 17 25 25 H 1.08997 * 109.46866 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47382 * 300.00091 * 1 2 3 27 27 H 1.09003 * 109.46969 * 60.00194 * 1 2 3 28 28 H 1.08997 * 109.47382 * 239.99909 * 2 1 3 29 29 H 1.09003 * 109.46969 * 119.99806 * 2 1 3 30 30 H 1.09001 * 109.47374 * 304.99644 * 3 2 1 31 31 H 1.09000 * 109.47480 * 304.90313 * 4 3 2 32 32 H 1.09006 * 109.47225 * 64.90933 * 4 3 2 33 33 H 1.08999 * 109.47053 * 183.92432 * 5 4 3 34 34 H 1.08999 * 109.47133 * 303.92429 * 5 4 3 35 35 H 1.09003 * 109.47030 * 63.92788 * 5 4 3 36 36 H 1.08996 * 109.47280 * 304.86244 * 6 3 2 37 37 H 1.08998 * 109.46874 * 184.86345 * 6 3 2 38 38 H 1.09008 * 109.46934 * 24.41732 * 8 7 6 39 39 H 1.09002 * 109.46897 * 144.41185 * 8 7 6 40 40 H 0.96998 * 119.99799 * 179.97438 * 12 11 9 41 41 H 1.08994 * 117.50097 * 359.97438 * 21 19 17 42 42 H 1.09002 * 117.49888 * 145.02052 * 21 19 17 43 43 H 1.09000 * 109.47183 * 59.99919 * 23 22 19 44 44 H 1.09001 * 109.47014 * 179.97438 * 23 22 19 45 45 H 1.09002 * 109.47480 * 299.99836 * 23 22 19 46 46 H 1.09001 * 109.47250 * 60.00158 * 24 22 19 47 47 H 1.09005 * 109.46667 * 180.02562 * 24 22 19 48 48 H 1.08997 * 109.47270 * 300.00202 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6352 2.1266 1.3073 5 6 2.0375 3.6019 1.2568 6 6 3.5649 1.4443 -0.1256 7 7 3.9482 0.8948 -1.4284 8 6 3.9715 1.7601 -2.6103 9 6 2.6681 1.6284 -3.3553 10 1 1.8698 1.0281 -2.9446 11 6 2.4949 2.2742 -4.5610 12 7 3.4670 3.0056 -5.0608 13 14 0.8796 2.1103 -5.4847 14 1 -0.2280 2.6247 -4.6399 15 1 0.9473 2.8955 -6.7433 16 1 0.6353 0.6810 -5.8050 17 6 4.2846 -0.4056 -1.5387 18 8 4.2653 -1.1221 -0.5603 19 6 4.6849 -0.9695 -2.8776 20 1 5.2309 -0.2883 -3.5303 21 6 3.7315 -1.9679 -3.5373 22 6 5.0537 -2.4532 -2.9377 23 6 6.1602 -2.8673 -3.9097 24 6 4.9883 -3.2507 -1.6336 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6055 1.9815 -0.8418 31 1 0.5560 2.0486 1.4392 32 1 2.1394 1.6409 2.1429 33 1 1.8125 4.0728 2.2137 34 1 3.1058 3.6804 1.0554 35 1 1.4806 4.1034 0.4652 36 1 3.9955 0.8331 0.6675 37 1 3.9353 2.4657 -0.0389 38 1 4.1093 2.7959 -2.2996 39 1 4.7938 1.4637 -3.2614 40 1 3.3453 3.4596 -5.9093 41 1 2.8149 -2.2172 -3.0027 42 1 3.6505 -1.9439 -4.6241 43 1 7.0843 -2.3511 -3.6495 44 1 6.3157 -3.9442 -3.8459 45 1 5.8694 -2.6014 -4.9260 46 1 3.9720 -3.2222 -1.2408 47 1 5.2753 -4.2846 -1.8253 48 1 5.6715 -2.8133 -0.9056 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126235730.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:28 Heat of formation + Delta-G solvation = -41.895766 kcal Electronic energy + Delta-G solvation = -24239.953329 eV Core-core repulsion = 21101.728388 eV Total energy + Delta-G solvation = -3138.224941 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.73026 -37.56501 -35.95293 -34.46189 -32.40604 -31.38161 -29.27260 -28.13463 -27.07423 -26.74039 -24.51575 -23.04697 -22.28880 -22.19066 -19.47093 -18.93370 -17.70293 -16.53425 -16.41221 -15.40419 -14.66587 -14.39531 -14.20359 -13.98746 -13.86395 -13.58116 -13.34596 -13.01706 -12.87104 -12.47066 -12.26710 -12.15829 -11.98999 -11.68563 -11.60324 -11.43909 -11.38916 -11.29571 -11.06938 -10.95933 -10.82038 -10.78194 -10.64660 -10.30269 -10.17696 -9.89086 -9.74533 -9.57634 -9.53541 -9.21873 -8.69162 -8.47080 -7.58925 -6.13410 -4.18452 3.25156 3.30344 3.31383 3.37907 3.92370 4.36427 4.42885 5.16212 5.19772 5.20380 5.22730 5.29555 5.38337 5.49502 5.52334 5.62160 5.72138 5.77512 5.83546 5.97392 6.01031 6.04669 6.07163 6.16097 6.19784 6.20090 6.25634 6.31176 6.32121 6.36679 6.43505 6.44665 6.54470 6.56883 6.59722 6.62199 6.67742 6.82205 6.91744 6.95970 7.08889 7.24885 7.64811 7.83141 8.13167 8.41554 8.87624 9.15302 9.48288 10.93571 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.010132 B = 0.008704 C = 0.005787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2762.843370 B = 3216.095163 C = 4837.441281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.106 4.106 3 C -0.103 4.103 4 C -0.116 4.116 5 C -0.154 4.154 6 C 0.125 3.875 7 N -0.592 5.592 8 C 0.240 3.760 9 C -0.522 4.522 10 H 0.061 0.939 11 C 0.065 3.935 12 N -0.894 5.894 13 Si 0.890 3.110 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.276 1.276 17 C 0.548 3.452 18 O -0.569 6.569 19 C -0.158 4.158 20 H 0.122 0.878 21 C -0.134 4.134 22 C -0.116 4.116 23 C -0.112 4.112 24 C -0.093 4.093 25 H 0.044 0.956 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.045 0.955 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.030 0.970 39 H 0.037 0.963 40 H 0.264 0.736 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.056 0.944 46 H 0.062 0.938 47 H 0.037 0.963 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.223 -5.213 6.480 8.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.144 4.144 3 C -0.122 4.122 4 C -0.154 4.154 5 C -0.211 4.211 6 C 0.001 3.999 7 N -0.321 5.321 8 C 0.120 3.880 9 C -0.561 4.561 10 H 0.080 0.920 11 C -0.137 4.137 12 N -0.533 5.533 13 Si 0.718 3.282 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.201 1.201 17 C 0.337 3.663 18 O -0.451 6.451 19 C -0.179 4.179 20 H 0.140 0.860 21 C -0.171 4.171 22 C -0.117 4.117 23 C -0.169 4.169 24 C -0.150 4.150 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.106 0.894 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.048 0.952 39 H 0.055 0.945 40 H 0.073 0.927 41 H 0.109 0.891 42 H 0.115 0.885 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.081 0.919 47 H 0.056 0.944 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.271 -5.416 6.819 8.713 hybrid contribution -1.020 0.350 -0.878 1.391 sum -0.749 -5.066 5.941 7.843 Atomic orbital electron populations 1.21826 0.97058 1.00595 1.01319 1.21412 0.94416 0.96431 1.02112 1.21599 0.96233 0.96418 0.97981 1.21563 1.00800 0.95439 0.97631 1.21834 1.01863 0.96461 1.00919 1.21392 0.94362 0.98219 0.85903 1.48156 1.64396 1.09531 1.10060 1.19397 0.97750 0.89325 0.81532 1.21418 0.99718 1.30274 1.04677 0.92043 1.24897 0.96588 0.95114 0.97147 1.69909 1.32002 1.31559 1.19832 0.86675 0.84082 0.78291 0.79151 1.20244 1.21315 1.20126 1.19464 0.76277 0.81804 0.88799 1.90579 1.56272 1.58666 1.39541 1.22223 1.05678 0.92408 0.97596 0.86037 1.22991 0.93364 1.00852 0.99906 1.21610 0.96982 0.94713 0.98401 1.21332 0.97080 1.00710 0.97758 1.21252 1.03064 0.96372 0.94317 0.93684 0.93213 0.92857 0.91631 0.92793 0.89430 0.92100 0.92626 0.93542 0.92473 0.92562 0.91131 0.91485 0.95198 0.94482 0.92664 0.89086 0.88534 0.92462 0.92400 0.92446 0.91943 0.94373 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.67 37.16 0.36 -1.96 16 2 C -0.11 -1.85 4.63 -26.73 -0.12 -1.98 16 3 C -0.10 -1.77 2.06 -90.62 -0.19 -1.95 16 4 C -0.12 -1.65 5.27 -26.73 -0.14 -1.79 16 5 C -0.15 -2.05 9.76 37.16 0.36 -1.68 16 6 C 0.12 2.27 4.85 -4.04 -0.02 2.25 16 7 N -0.59 -12.23 2.24 -175.06 -0.39 -12.62 16 8 C 0.24 5.59 4.98 -5.20 -0.03 5.57 16 9 C -0.52 -13.12 8.65 -34.44 -0.30 -13.42 16 10 H 0.06 1.58 7.61 -52.49 -0.40 1.18 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -24.37 13.29 55.43 0.74 -23.63 16 13 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 14 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 C 0.55 11.25 6.01 -10.99 -0.07 11.19 16 18 O -0.57 -12.04 11.57 5.56 0.06 -11.98 16 19 C -0.16 -3.02 4.94 -91.77 -0.45 -3.48 16 20 H 0.12 2.44 6.52 -51.93 -0.34 2.10 16 21 C -0.13 -2.36 9.53 -26.69 -0.25 -2.61 16 22 C -0.12 -1.90 2.70 -154.47 -0.42 -2.32 16 23 C -0.11 -1.51 9.85 37.15 0.37 -1.15 16 24 C -0.09 -1.50 8.09 37.16 0.30 -1.20 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.68 6.46 -51.93 -0.34 0.34 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.07 1.33 6.14 -51.93 -0.32 1.01 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.09 1.74 7.31 -51.93 -0.38 1.36 16 31 H 0.06 0.82 6.35 -51.93 -0.33 0.49 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.77 6.29 -51.93 -0.33 0.44 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.07 1.30 7.25 -51.93 -0.38 0.92 16 37 H 0.07 1.16 6.08 -51.93 -0.32 0.85 16 38 H 0.03 0.73 7.89 -51.92 -0.41 0.32 16 39 H 0.04 0.91 6.24 -51.93 -0.32 0.59 16 40 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 41 H 0.09 1.65 8.05 -51.93 -0.42 1.23 16 42 H 0.10 1.62 8.05 -51.93 -0.42 1.20 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.68 7.92 -51.93 -0.41 0.27 16 45 H 0.06 0.75 7.90 -51.93 -0.41 0.34 16 46 H 0.06 1.09 7.02 -51.93 -0.36 0.73 16 47 H 0.04 0.52 7.92 -51.93 -0.41 0.11 16 48 H 0.06 1.09 7.26 -51.93 -0.38 0.72 16 LS Contribution 367.97 15.07 5.55 5.55 Total: -1.00 -26.60 367.97 -8.52 -35.12 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -8.76 Total: 5.00 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: -0.69 Total: -12.92 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.34 Total: -36.25 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.06 Total: -11.98 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -26.60 -8.52 -35.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126235730.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.776 kcal (2) G-P(sol) polarization free energy of solvation -26.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds