Wall clock time and date at job start Tue Mar 31 2020 05:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47424 * 2 1 4 4 C 1.52998 * 115.55762 * 34.30906 * 3 2 1 5 5 C 1.52999 * 117.49861 * 248.62704 * 3 2 1 6 6 C 1.52992 * 117.49886 * 180.02562 * 3 2 1 7 7 H 1.09009 * 117.51661 * 214.96849 * 6 3 2 8 8 C 1.50701 * 117.50128 * 359.97438 * 6 3 2 9 9 O 1.21276 * 119.99983 * 7.52184 * 8 6 3 10 10 N 1.34780 * 119.99825 * 187.51723 * 8 6 3 11 11 C 1.46504 * 119.99757 * 184.86183 * 10 8 6 12 12 C 1.50700 * 109.46854 * 92.59759 * 11 10 8 13 13 H 1.08000 * 119.99905 * 355.13710 * 12 11 10 14 14 C 1.37877 * 120.00137 * 175.13988 * 12 11 10 15 15 N 1.31520 * 119.99762 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00341 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47023 * 180.02562 * 16 14 12 18 18 H 1.48491 * 109.47067 * 60.00062 * 16 14 12 19 19 H 1.48501 * 109.46934 * 300.00018 * 16 14 12 20 20 C 1.46496 * 120.00217 * 4.86868 * 10 8 6 21 21 C 1.52994 * 109.47621 * 91.13522 * 20 10 8 22 22 C 1.53003 * 109.47196 * 66.05158 * 21 20 10 23 23 C 1.52996 * 109.47452 * 186.05800 * 21 20 10 24 24 C 1.53006 * 109.47085 * 306.05754 * 21 20 10 25 25 H 1.09001 * 109.47136 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47053 * 299.99995 * 1 2 3 27 27 H 1.09003 * 109.47367 * 60.00028 * 1 2 3 28 28 H 1.09001 * 109.47053 * 240.00005 * 2 1 3 29 29 H 1.08994 * 109.47302 * 120.00273 * 2 1 3 30 30 H 1.09004 * 109.47177 * 205.68706 * 4 3 2 31 31 H 1.09000 * 109.47704 * 325.69235 * 4 3 2 32 32 H 1.09004 * 109.47031 * 85.69515 * 4 3 2 33 33 H 1.08996 * 117.49860 * 145.02280 * 5 3 2 34 34 H 1.09002 * 117.52040 * 359.97438 * 5 3 2 35 35 H 1.09006 * 109.47130 * 332.59767 * 11 10 8 36 36 H 1.08998 * 109.47176 * 212.59852 * 11 10 8 37 37 H 0.97001 * 119.99773 * 0.02562 * 15 14 12 38 38 H 1.09003 * 109.46998 * 211.13664 * 20 10 8 39 39 H 1.09001 * 109.46960 * 331.13365 * 20 10 8 40 40 H 1.09006 * 109.46644 * 60.00335 * 22 21 20 41 41 H 1.09001 * 109.47109 * 179.97438 * 22 21 20 42 42 H 1.08999 * 109.47415 * 300.00685 * 22 21 20 43 43 H 1.09000 * 109.47327 * 59.99737 * 23 21 20 44 44 H 1.08999 * 109.47399 * 180.02562 * 23 21 20 45 45 H 1.09006 * 109.46945 * 300.00006 * 23 21 20 46 46 H 1.09001 * 109.47004 * 63.25914 * 24 21 20 47 47 H 1.09000 * 109.47263 * 183.25676 * 24 21 20 48 48 H 1.08999 * 109.46696 * 303.25805 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1852 2.4449 0.7780 5 6 2.7419 1.9436 -1.2638 6 6 3.5550 1.6561 -0.0006 7 1 3.9433 2.5108 0.5534 8 6 4.4307 0.4296 -0.0006 9 8 3.9355 -0.6690 -0.1375 10 7 5.7641 0.5536 0.1516 11 6 6.6263 -0.6260 0.0454 12 6 7.1117 -0.7672 -1.3744 13 1 6.7467 -0.0973 -2.1389 14 6 8.0216 -1.7514 -1.6972 15 7 8.4656 -2.5675 -0.7663 16 14 8.6227 -1.9268 -3.4571 17 1 9.5883 -3.0519 -3.5405 18 1 9.2895 -0.6693 -3.8801 19 1 7.4677 -2.1992 -4.3499 20 6 6.3512 1.8680 0.4235 21 6 6.4414 2.0835 1.9355 22 6 7.4381 1.0888 2.5339 23 6 6.9124 3.5111 2.2200 24 6 5.0638 1.8661 2.5647 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.3352 3.4443 0.3696 31 1 0.1339 2.1707 0.6908 32 1 1.4777 2.4339 1.8280 33 1 2.5947 2.9875 -1.5409 34 1 2.8408 1.2458 -2.0953 35 1 6.0619 -1.5152 0.3265 36 1 7.4812 -0.5125 0.7120 37 1 8.1526 -2.4771 0.1474 38 1 7.3499 1.9166 -0.0107 39 1 5.7252 2.6437 -0.0174 40 1 8.4196 1.2437 2.0856 41 1 7.5027 1.2427 3.6110 42 1 7.1026 0.0717 2.3312 43 1 6.2024 4.2198 1.7937 44 1 6.9771 3.6645 3.2971 45 1 7.8939 3.6660 1.7717 46 1 4.7537 0.8323 2.4120 47 1 5.1151 2.0759 3.6331 48 1 4.3413 2.5351 2.0973 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129928913.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:57 Heat of formation + Delta-G solvation = -30.608858 kcal Electronic energy + Delta-G solvation = -24233.481348 eV Core-core repulsion = 21095.745844 eV Total energy + Delta-G solvation = -3137.735504 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.13772 -37.93435 -36.53365 -33.99545 -32.56334 -31.90515 -28.42330 -27.70320 -27.19110 -26.75301 -25.49001 -23.79642 -23.57283 -21.96771 -19.39065 -18.93015 -17.62715 -16.87952 -16.62598 -15.49852 -14.99979 -14.59672 -14.24793 -14.01558 -13.93322 -13.69828 -13.45039 -13.18418 -13.07943 -12.86867 -12.42648 -12.14361 -12.07439 -11.84624 -11.72095 -11.62183 -11.47251 -11.35070 -11.25784 -10.98516 -10.79533 -10.76035 -10.66514 -10.61906 -10.43533 -10.22908 -10.09587 -9.80312 -9.42458 -9.05858 -8.70689 -8.35733 -7.51580 -6.36180 -4.07832 3.16472 3.42967 3.46803 3.64238 3.83693 4.14745 4.54329 4.77416 4.85653 4.97445 5.00538 5.10816 5.15258 5.20747 5.35725 5.42058 5.47908 5.61056 5.64371 5.69116 5.69927 5.75091 5.79273 5.85348 5.88147 5.90670 5.95273 6.02214 6.07116 6.13745 6.18187 6.22443 6.23403 6.35010 6.38048 6.38954 6.52723 6.56804 6.62957 6.83983 6.95460 7.20022 7.49500 8.08626 8.39013 8.47162 8.80634 9.11349 9.61497 11.00565 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.013490 B = 0.006489 C = 0.004949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.174018 B = 4314.179282 C = 5656.263742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.076 4.076 3 C -0.094 4.094 4 C -0.120 4.120 5 C -0.150 4.150 6 C -0.190 4.190 7 H 0.123 0.877 8 C 0.539 3.461 9 O -0.542 6.542 10 N -0.586 5.586 11 C 0.231 3.769 12 C -0.605 4.605 13 H 0.050 0.950 14 C 0.020 3.980 15 N -0.910 5.910 16 Si 1.069 2.931 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.288 1.288 20 C 0.123 3.877 21 C -0.088 4.088 22 C -0.143 4.143 23 C -0.137 4.137 24 C -0.144 4.144 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.031 0.969 36 H 0.031 0.969 37 H 0.267 0.733 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.046 0.954 42 H 0.066 0.934 43 H 0.052 0.948 44 H 0.053 0.947 45 H 0.056 0.944 46 H 0.058 0.942 47 H 0.049 0.951 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.880 13.469 5.351 17.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.113 4.113 3 C -0.094 4.094 4 C -0.177 4.177 5 C -0.188 4.188 6 C -0.211 4.211 7 H 0.140 0.860 8 C 0.327 3.673 9 O -0.421 6.421 10 N -0.315 5.315 11 C 0.112 3.888 12 C -0.644 4.644 13 H 0.068 0.932 14 C -0.185 4.185 15 N -0.546 5.546 16 Si 0.898 3.102 17 H -0.207 1.207 18 H -0.215 1.215 19 H -0.215 1.215 20 C -0.002 4.002 21 C -0.089 4.089 22 C -0.200 4.200 23 C -0.194 4.194 24 C -0.201 4.201 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.085 0.915 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.068 0.932 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.101 11.963 4.295 15.633 hybrid contribution -0.745 1.095 0.952 1.631 sum -9.847 13.058 5.246 17.175 Atomic orbital electron populations 1.21931 0.96963 1.01064 1.01047 1.21060 0.93497 0.92621 1.04132 1.21502 0.90990 0.97341 0.99581 1.21491 0.99795 0.97017 0.99433 1.23138 1.02314 1.01825 0.91499 1.22790 0.93651 1.00094 1.04596 0.85979 1.19354 0.82347 0.88897 0.76723 1.90640 1.73284 1.27772 1.50387 1.47852 1.05830 1.09218 1.68639 1.19455 0.88817 0.83035 0.97513 1.22279 1.28459 1.19289 0.94361 0.93216 1.25769 0.94296 0.92555 1.05833 1.70808 1.43594 1.37299 1.02929 0.83533 0.76315 0.76202 0.74186 1.20686 1.21497 1.21485 1.21508 0.99948 0.85333 0.93405 1.21007 0.96000 0.95504 0.96392 1.21977 0.98634 1.00012 0.99351 1.21802 1.01094 0.95295 1.01254 1.22061 0.96059 1.02221 0.99764 0.93087 0.92884 0.93139 0.90404 0.91277 0.92720 0.91148 0.92343 0.88541 0.88387 0.95110 0.95092 0.92271 0.90187 0.91475 0.92580 0.93505 0.91468 0.92901 0.92744 0.92496 0.92286 0.93174 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.92 37.16 0.33 -1.52 16 2 C -0.08 -1.18 4.37 -26.73 -0.12 -1.30 16 3 C -0.09 -1.30 2.47 -154.51 -0.38 -1.69 16 4 C -0.12 -1.28 9.49 37.16 0.35 -0.93 16 5 C -0.15 -2.14 9.52 -26.75 -0.25 -2.39 16 6 C -0.19 -2.99 3.91 -91.80 -0.36 -3.35 16 7 H 0.12 1.68 4.13 -51.92 -0.21 1.46 16 8 C 0.54 11.22 5.77 -10.98 -0.06 11.15 16 9 O -0.54 -13.27 12.69 5.56 0.07 -13.20 16 10 N -0.59 -12.37 1.96 -175.06 -0.34 -12.72 16 11 C 0.23 5.97 3.77 -5.19 -0.02 5.95 16 12 C -0.60 -17.32 9.39 -34.44 -0.32 -17.64 16 13 H 0.05 1.45 7.81 -52.49 -0.41 1.04 16 14 C 0.02 0.57 5.46 -17.82 -0.10 0.47 16 15 N -0.91 -27.73 13.65 55.43 0.76 -26.97 16 16 Si 1.07 25.74 29.90 -169.99 -5.08 20.65 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 C 0.12 2.07 4.46 -4.05 -0.02 2.05 16 21 C -0.09 -1.25 0.85 -154.51 -0.13 -1.38 16 22 C -0.14 -2.23 7.52 37.16 0.28 -1.96 16 23 C -0.14 -1.54 8.47 37.16 0.31 -1.23 16 24 C -0.14 -1.98 7.02 37.16 0.26 -1.72 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.56 6.45 -51.93 -0.33 0.23 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.08 1.43 6.83 -51.93 -0.35 1.07 16 29 H 0.07 1.21 7.47 -51.93 -0.39 0.82 16 30 H 0.05 0.51 7.90 -51.93 -0.41 0.10 16 31 H 0.07 0.68 5.59 -51.93 -0.29 0.39 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.10 1.11 8.05 -51.93 -0.42 0.69 16 34 H 0.10 1.57 8.05 -51.93 -0.42 1.16 16 35 H 0.03 0.90 7.28 -51.93 -0.38 0.52 16 36 H 0.03 0.80 5.39 -51.93 -0.28 0.52 16 37 H 0.27 8.09 7.19 -40.82 -0.29 7.79 16 38 H 0.08 1.45 8.08 -51.93 -0.42 1.03 16 39 H 0.07 1.00 6.21 -51.93 -0.32 0.68 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.07 1.24 5.74 -51.93 -0.30 0.95 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.98 6.59 -51.93 -0.34 0.64 16 47 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.06 0.72 5.46 -51.93 -0.28 0.43 16 LS Contribution 358.41 15.07 5.40 5.40 Total: -1.00 -31.97 358.41 -7.88 -39.85 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -8.46 Total: 2.46 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: -0.23 Total: -15.48 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.41 Total: -39.69 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.07 Total: -13.20 kcal Atomic # 14 Polarization: 25.74 SS G_CDS: -5.08 Total: 20.65 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.97 -7.88 -39.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129928913.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.242 kcal (2) G-P(sol) polarization free energy of solvation -31.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds