Wall clock time and date at job start Tue Mar 31 2020 05:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47424 * 2 1 4 4 C 1.52998 * 115.55762 * 34.30906 * 3 2 1 5 5 C 1.52999 * 117.49861 * 248.62704 * 3 2 1 6 6 C 1.52992 * 117.49886 * 180.02562 * 3 2 1 7 7 H 1.09009 * 117.51661 * 214.96849 * 6 3 2 8 8 C 1.50701 * 117.50128 * 359.97438 * 6 3 2 9 9 O 1.21276 * 119.99983 * 7.52184 * 8 6 3 10 10 N 1.34780 * 119.99825 * 187.51723 * 8 6 3 11 11 C 1.46504 * 119.99757 * 184.86183 * 10 8 6 12 12 C 1.50700 * 109.46854 * 92.59759 * 11 10 8 13 13 H 1.08000 * 119.99905 * 355.13710 * 12 11 10 14 14 C 1.37877 * 120.00137 * 175.13988 * 12 11 10 15 15 N 1.31520 * 119.99762 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00341 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47023 * 180.02562 * 16 14 12 18 18 H 1.48491 * 109.47067 * 60.00062 * 16 14 12 19 19 H 1.48501 * 109.46934 * 300.00018 * 16 14 12 20 20 C 1.46496 * 120.00217 * 4.86868 * 10 8 6 21 21 C 1.52994 * 109.47621 * 91.13522 * 20 10 8 22 22 C 1.53003 * 109.47196 * 66.05158 * 21 20 10 23 23 C 1.52996 * 109.47452 * 186.05800 * 21 20 10 24 24 C 1.53006 * 109.47085 * 306.05754 * 21 20 10 25 25 H 1.09001 * 109.47136 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47053 * 299.99995 * 1 2 3 27 27 H 1.09003 * 109.47367 * 60.00028 * 1 2 3 28 28 H 1.09001 * 109.47053 * 240.00005 * 2 1 3 29 29 H 1.08994 * 109.47302 * 120.00273 * 2 1 3 30 30 H 1.09004 * 109.47177 * 205.68706 * 4 3 2 31 31 H 1.09000 * 109.47704 * 325.69235 * 4 3 2 32 32 H 1.09004 * 109.47031 * 85.69515 * 4 3 2 33 33 H 1.08996 * 117.49860 * 145.02280 * 5 3 2 34 34 H 1.09002 * 117.52040 * 359.97438 * 5 3 2 35 35 H 1.09006 * 109.47130 * 332.59767 * 11 10 8 36 36 H 1.08998 * 109.47176 * 212.59852 * 11 10 8 37 37 H 0.97001 * 119.99773 * 0.02562 * 15 14 12 38 38 H 1.09003 * 109.46998 * 211.13664 * 20 10 8 39 39 H 1.09001 * 109.46960 * 331.13365 * 20 10 8 40 40 H 1.09006 * 109.46644 * 60.00335 * 22 21 20 41 41 H 1.09001 * 109.47109 * 179.97438 * 22 21 20 42 42 H 1.08999 * 109.47415 * 300.00685 * 22 21 20 43 43 H 1.09000 * 109.47327 * 59.99737 * 23 21 20 44 44 H 1.08999 * 109.47399 * 180.02562 * 23 21 20 45 45 H 1.09006 * 109.46945 * 300.00006 * 23 21 20 46 46 H 1.09001 * 109.47004 * 63.25914 * 24 21 20 47 47 H 1.09000 * 109.47263 * 183.25676 * 24 21 20 48 48 H 1.08999 * 109.46696 * 303.25805 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1852 2.4449 0.7780 5 6 2.7419 1.9436 -1.2638 6 6 3.5550 1.6561 -0.0006 7 1 3.9433 2.5108 0.5534 8 6 4.4307 0.4296 -0.0006 9 8 3.9355 -0.6690 -0.1375 10 7 5.7641 0.5536 0.1516 11 6 6.6263 -0.6260 0.0454 12 6 7.1117 -0.7672 -1.3744 13 1 6.7467 -0.0973 -2.1389 14 6 8.0216 -1.7514 -1.6972 15 7 8.4656 -2.5675 -0.7663 16 14 8.6227 -1.9268 -3.4571 17 1 9.5883 -3.0519 -3.5405 18 1 9.2895 -0.6693 -3.8801 19 1 7.4677 -2.1992 -4.3499 20 6 6.3512 1.8680 0.4235 21 6 6.4414 2.0835 1.9355 22 6 7.4381 1.0888 2.5339 23 6 6.9124 3.5111 2.2200 24 6 5.0638 1.8661 2.5647 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.3352 3.4443 0.3696 31 1 0.1339 2.1707 0.6908 32 1 1.4777 2.4339 1.8280 33 1 2.5947 2.9875 -1.5409 34 1 2.8408 1.2458 -2.0953 35 1 6.0619 -1.5152 0.3265 36 1 7.4812 -0.5125 0.7120 37 1 8.1526 -2.4771 0.1474 38 1 7.3499 1.9166 -0.0107 39 1 5.7252 2.6437 -0.0174 40 1 8.4196 1.2437 2.0856 41 1 7.5027 1.2427 3.6110 42 1 7.1026 0.0717 2.3312 43 1 6.2024 4.2198 1.7937 44 1 6.9771 3.6645 3.2971 45 1 7.8939 3.6660 1.7717 46 1 4.7537 0.8323 2.4120 47 1 5.1151 2.0759 3.6331 48 1 4.3413 2.5351 2.0973 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129928913.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:57 Heat of formation + Delta-G solvation = -48.456346 kcal Electronic energy + Delta-G solvation = -24234.255273 eV Core-core repulsion = 21095.745844 eV Total energy + Delta-G solvation = -3138.509429 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.60995 -39.21713 -37.99938 -35.91047 -34.42631 -33.13688 -29.88862 -28.91540 -28.32365 -28.10496 -26.97312 -25.64164 -24.69109 -23.67892 -20.80032 -20.14303 -19.20806 -18.75489 -18.14121 -17.11481 -16.51401 -15.78793 -15.70200 -15.47674 -15.28964 -15.05261 -14.78595 -14.71218 -14.56427 -13.99604 -13.93920 -13.69354 -13.28790 -13.17810 -13.05937 -12.98448 -12.71624 -12.59780 -12.53062 -12.48515 -12.34185 -12.07268 -12.01887 -11.98606 -11.81868 -11.68833 -11.53440 -11.13072 -10.98079 -10.65320 -10.59007 -10.33112 -9.36793 -8.69911 -6.46682 1.45417 1.54577 1.65463 1.74364 2.26049 2.51312 2.86542 3.07869 3.54504 3.67225 3.78920 3.82035 3.92007 4.01297 4.07975 4.16168 4.41319 4.44048 4.50575 4.57149 4.65047 4.69617 4.71386 4.75994 4.80008 4.86438 4.88330 4.90306 4.95686 4.97891 5.03987 5.05240 5.09175 5.12783 5.17390 5.24538 5.29134 5.29875 5.36772 5.42925 5.47818 5.63788 5.65903 5.83434 6.14423 6.43016 6.76032 7.28683 7.47678 8.62717 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.013490 B = 0.006489 C = 0.004949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.174018 B = 4314.179282 C = 5656.263742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.076 4.076 3 C -0.085 4.085 4 C -0.115 4.115 5 C -0.142 4.142 6 C -0.198 4.198 7 H 0.152 0.848 8 C 0.528 3.472 9 O -0.594 6.594 10 N -0.591 5.591 11 C 0.248 3.752 12 C -0.617 4.617 13 H 0.041 0.959 14 C -0.031 4.031 15 N -0.930 5.930 16 Si 1.117 2.883 17 H -0.278 1.278 18 H -0.261 1.261 19 H -0.281 1.281 20 C 0.117 3.883 21 C -0.082 4.082 22 C -0.141 4.141 23 C -0.129 4.129 24 C -0.137 4.137 25 H 0.047 0.953 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.036 0.964 29 H 0.037 0.963 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.139 0.861 34 H 0.069 0.931 35 H -0.018 1.018 36 H 0.029 0.971 37 H 0.253 0.747 38 H 0.063 0.937 39 H 0.097 0.903 40 H 0.047 0.953 41 H 0.069 0.931 42 H 0.025 0.975 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.056 0.944 46 H 0.018 0.982 47 H 0.070 0.930 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.139 17.580 5.321 21.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 C -0.085 4.085 4 C -0.172 4.172 5 C -0.179 4.179 6 C -0.219 4.219 7 H 0.169 0.831 8 C 0.318 3.682 9 O -0.476 6.476 10 N -0.319 5.319 11 C 0.127 3.873 12 C -0.655 4.655 13 H 0.060 0.940 14 C -0.229 4.229 15 N -0.567 5.567 16 Si 0.938 3.062 17 H -0.203 1.203 18 H -0.186 1.186 19 H -0.207 1.207 20 C -0.006 4.006 21 C -0.083 4.083 22 C -0.198 4.198 23 C -0.187 4.187 24 C -0.194 4.194 25 H 0.066 0.934 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.157 0.843 34 H 0.088 0.912 35 H 0.000 1.000 36 H 0.047 0.953 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.115 0.885 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.044 0.956 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.075 0.925 46 H 0.038 0.962 47 H 0.089 0.911 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.365 16.129 4.292 19.647 hybrid contribution -0.366 -0.268 1.001 1.099 sum -10.732 15.861 5.292 19.868 Atomic orbital electron populations 1.21868 0.93811 1.01587 1.02826 1.20941 0.96198 0.93612 1.00652 1.21677 0.89995 0.97051 0.99818 1.21533 0.99564 0.96865 0.99192 1.23262 1.00981 1.03462 0.90180 1.22730 0.93961 0.98223 1.06942 0.83066 1.20353 0.82418 0.90186 0.75220 1.90619 1.74163 1.30350 1.52494 1.47858 1.05918 1.09428 1.68744 1.18914 0.88612 0.83707 0.96110 1.22570 1.28428 1.19182 0.95358 0.94020 1.27345 0.94351 0.91921 1.09280 1.70931 1.44616 1.38406 1.02750 0.82945 0.76333 0.77463 0.69472 1.20304 1.18584 1.20672 1.21811 0.99339 0.83621 0.95782 1.20988 0.96029 0.97305 0.94007 1.21947 0.98621 0.98274 1.01001 1.21752 1.01602 0.92725 1.02601 1.22001 0.95901 1.00205 1.01320 0.93400 0.90545 0.91683 0.94518 0.94421 0.90183 0.89789 0.91688 0.84294 0.91241 0.99971 0.95326 0.93725 0.91858 0.88459 0.93396 0.91205 0.95597 0.90592 0.91102 0.92475 0.96234 0.91088 0.90359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 8.92 71.98 0.64 -2.65 16 2 C -0.08 -2.45 4.37 30.59 0.13 -2.32 16 3 C -0.08 -2.21 2.47 -52.18 -0.13 -2.34 16 4 C -0.11 -1.92 9.49 71.98 0.68 -1.24 16 5 C -0.14 -3.73 9.52 30.58 0.29 -3.44 16 6 C -0.20 -5.96 3.91 -11.56 -0.05 -6.01 16 7 H 0.15 3.58 4.13 -2.38 -0.01 3.57 16 8 C 0.53 23.00 5.77 87.66 0.51 23.51 16 9 O -0.59 -31.64 12.69 -3.02 -0.04 -31.68 16 10 N -0.59 -26.16 1.96 -826.16 -1.62 -27.79 16 11 C 0.25 13.81 3.77 85.63 0.32 14.13 16 12 C -0.62 -37.02 9.39 25.60 0.24 -36.78 16 13 H 0.04 2.51 7.81 -2.91 -0.02 2.49 16 14 C -0.03 -1.85 5.46 84.65 0.46 -1.39 16 15 N -0.93 -59.19 13.65 21.45 0.29 -58.90 16 16 Si 1.12 52.43 29.90 68.60 2.05 54.48 16 17 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 18 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 20 C 0.12 3.91 4.46 86.38 0.39 4.29 16 21 C -0.08 -2.22 0.85 -52.18 -0.04 -2.26 16 22 C -0.14 -4.51 7.52 71.98 0.54 -3.97 16 23 C -0.13 -2.42 8.47 71.98 0.61 -1.81 16 24 C -0.14 -3.53 7.02 71.98 0.51 -3.03 16 25 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.08 1.40 6.45 -2.39 -0.02 1.39 16 27 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.04 1.45 6.83 -2.39 -0.02 1.43 16 29 H 0.04 1.41 7.47 -2.39 -0.02 1.40 16 30 H 0.08 1.00 7.90 -2.38 -0.02 0.98 16 31 H 0.08 1.21 5.59 -2.39 -0.01 1.20 16 32 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.14 2.51 8.05 -2.39 -0.02 2.49 16 34 H 0.07 2.25 8.05 -2.39 -0.02 2.23 16 35 H -0.02 -1.14 7.28 -2.38 -0.02 -1.16 16 36 H 0.03 1.60 5.39 -2.39 -0.01 1.59 16 37 H 0.25 16.41 7.19 -92.71 -0.67 15.74 16 38 H 0.06 2.31 8.08 -2.39 -0.02 2.29 16 39 H 0.10 2.64 6.21 -2.39 -0.01 2.62 16 40 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 41 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.02 1.02 5.74 -2.39 -0.01 1.00 16 43 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 46 H 0.02 0.64 6.59 -2.39 -0.02 0.63 16 47 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.08 1.66 5.46 -2.39 -0.01 1.64 16 Total: -1.00 -77.42 358.41 6.81 -70.61 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: 1.02 Total: 18.58 kcal Atomic # 6 Polarization: -30.42 SS G_CDS: 5.11 Total: -25.31 kcal Atomic # 7 Polarization: -85.35 SS G_CDS: -1.33 Total: -86.68 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -0.04 Total: -31.68 kcal Atomic # 14 Polarization: 52.43 SS G_CDS: 2.05 Total: 54.48 kcal Total: -77.42 6.81 -70.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129928913.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.154 kcal (2) G-P(sol) polarization free energy of solvation -77.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds