Wall clock time and date at job start Tue Mar 31 2020 05:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46809 * 2 1 4 4 C 1.52996 * 115.56226 * 34.30993 * 3 2 1 5 5 C 1.53074 * 117.49255 * 248.59876 * 3 2 1 6 6 C 1.53001 * 59.98588 * 252.51883 * 5 3 2 7 7 H 1.09002 * 117.50101 * 107.50119 * 6 5 3 8 8 C 1.50697 * 117.49749 * 252.50257 * 6 5 3 9 9 O 1.21282 * 120.00387 * 82.02073 * 8 6 5 10 10 N 1.34775 * 120.00121 * 262.01720 * 8 6 5 11 11 C 1.46497 * 120.00118 * 174.37536 * 10 8 6 12 12 C 1.50700 * 109.47063 * 269.99861 * 11 10 8 13 13 H 1.07999 * 120.00462 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99577 * 180.02562 * 12 11 10 15 15 N 1.31507 * 120.00201 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99491 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47267 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47012 * 120.00033 * 16 14 12 19 19 H 1.48501 * 109.47054 * 239.99742 * 16 14 12 20 20 C 1.46504 * 119.99970 * 354.37964 * 10 8 6 21 21 C 1.53000 * 109.47102 * 267.28079 * 20 10 8 22 22 C 1.53000 * 109.47357 * 53.88410 * 21 20 10 23 23 C 1.53008 * 109.46862 * 293.88568 * 21 20 10 24 24 C 1.52993 * 109.47133 * 173.88782 * 21 20 10 25 25 H 1.09002 * 109.47267 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47442 * 299.99760 * 1 2 3 27 27 H 1.09003 * 109.47454 * 60.00147 * 1 2 3 28 28 H 1.08991 * 109.47350 * 239.99842 * 2 1 3 29 29 H 1.09003 * 109.47100 * 119.99442 * 2 1 3 30 30 H 1.09001 * 109.46707 * 205.68672 * 4 3 2 31 31 H 1.08994 * 109.47591 * 325.69191 * 4 3 2 32 32 H 1.09002 * 109.46903 * 85.68881 * 4 3 2 33 33 H 1.08998 * 117.51559 * 145.03991 * 5 3 2 34 34 H 1.08999 * 117.51165 * 359.97438 * 5 3 2 35 35 H 1.09000 * 109.47438 * 30.00365 * 11 10 8 36 36 H 1.09001 * 109.47106 * 150.00438 * 11 10 8 37 37 H 0.97002 * 119.99649 * 179.97438 * 15 14 12 38 38 H 1.08997 * 109.47163 * 147.27567 * 20 10 8 39 39 H 1.09004 * 109.47034 * 27.27774 * 20 10 8 40 40 H 1.09003 * 109.46639 * 308.66118 * 22 21 20 41 41 H 1.09001 * 109.47399 * 188.66116 * 22 21 20 42 42 H 1.08995 * 109.47106 * 68.66251 * 22 21 20 43 43 H 1.08999 * 109.46645 * 180.02562 * 23 21 20 44 44 H 1.08996 * 109.46645 * 299.99809 * 23 21 20 45 45 H 1.08994 * 109.47079 * 59.99818 * 23 21 20 46 46 H 1.09001 * 109.47356 * 299.99428 * 24 21 20 47 47 H 1.09002 * 109.47497 * 59.99790 * 24 21 20 48 48 H 1.09001 * 109.47188 * 179.97438 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.1850 2.4450 0.7780 5 6 2.7426 1.9437 -1.2642 6 6 3.5550 1.6562 0.0000 7 1 4.1883 0.7691 0.0004 8 6 4.0909 2.8379 0.7663 9 8 3.3746 3.4319 1.5441 10 7 5.3665 3.2347 0.5875 11 6 5.8519 4.4549 1.2369 12 6 5.6229 5.6337 0.3263 13 1 5.1615 5.4886 -0.6393 14 6 6.0025 6.8975 0.7262 15 7 6.5639 7.0743 1.9022 16 14 5.7180 8.3588 -0.4022 17 1 5.0750 7.8965 -1.6584 18 1 4.8340 9.3418 0.2742 19 1 7.0194 8.9999 -0.7196 20 6 6.2675 2.4459 -0.2565 21 6 7.0328 1.4446 0.6111 22 6 6.0403 0.6125 1.4256 23 6 7.9646 2.2003 1.5607 24 6 7.8587 0.5199 -0.2852 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.3350 3.4443 0.3695 31 1 0.1338 2.1707 0.6908 32 1 1.4775 2.4339 1.8280 33 1 2.5959 2.9875 -1.5418 34 1 2.8418 1.2456 -2.0954 35 1 5.3131 4.6079 2.1719 36 1 6.9177 4.3571 1.4435 37 1 6.8312 7.9634 2.1832 38 1 6.9741 3.1103 -0.7537 39 1 5.6860 1.9079 -1.0052 40 1 5.3508 1.2769 1.9466 41 1 6.5831 0.0091 2.1532 42 1 5.4799 -0.0412 0.7574 43 1 8.5101 1.4870 2.1785 44 1 8.6717 2.7931 0.9804 45 1 7.3762 2.8592 2.1992 46 1 7.1949 -0.0185 -0.9617 47 1 8.5658 1.1127 -0.8655 48 1 8.4042 -0.1931 0.3329 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129929383.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:02 Heat of formation + Delta-G solvation = -28.747200 kcal Electronic energy + Delta-G solvation = -24108.927321 eV Core-core repulsion = 20971.272545 eV Total energy + Delta-G solvation = -3137.654776 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.00860 -37.85327 -36.48395 -33.78787 -32.42436 -31.99380 -28.34321 -27.55888 -27.13165 -26.80821 -25.46571 -24.17496 -23.57498 -21.82549 -19.20126 -18.82157 -17.49778 -16.55594 -16.46267 -15.33868 -15.03685 -14.65826 -14.47306 -14.33483 -13.93921 -13.71088 -13.35456 -12.87577 -12.75489 -12.50108 -12.27822 -12.08107 -12.06351 -11.99543 -11.74832 -11.49754 -11.36084 -11.25514 -11.15263 -10.96012 -10.90362 -10.80156 -10.69940 -10.53885 -10.37063 -10.17343 -10.06921 -9.78348 -9.49092 -9.39590 -8.57137 -8.39453 -7.51438 -6.01566 -4.05644 3.30263 3.32805 3.38274 3.42244 3.87004 4.18459 4.46133 4.80196 4.90673 5.04547 5.07555 5.12170 5.16940 5.24886 5.31988 5.36325 5.49503 5.55688 5.71509 5.72809 5.75380 5.81988 5.90367 5.91495 5.95249 6.02058 6.05879 6.13494 6.14245 6.22652 6.25818 6.29798 6.32239 6.35575 6.40221 6.46632 6.50062 6.63548 6.76472 6.91459 7.19745 7.51287 7.65239 7.96330 8.28923 8.54279 8.95039 9.21954 9.59515 11.06097 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.013211 B = 0.006457 C = 0.004832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.932586 B = 4335.105848 C = 5793.152700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.084 4.084 3 C -0.096 4.096 4 C -0.108 4.108 5 C -0.155 4.155 6 C -0.187 4.187 7 H 0.122 0.878 8 C 0.539 3.461 9 O -0.539 6.539 10 N -0.590 5.590 11 C 0.240 3.760 12 C -0.524 4.524 13 H 0.056 0.944 14 C 0.061 3.939 15 N -0.894 5.894 16 Si 0.895 3.105 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.284 1.284 20 C 0.123 3.877 21 C -0.087 4.087 22 C -0.143 4.143 23 C -0.144 4.144 24 C -0.136 4.136 25 H 0.049 0.951 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.041 0.959 36 H 0.042 0.958 37 H 0.262 0.738 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.050 0.950 42 H 0.051 0.949 43 H 0.044 0.956 44 H 0.055 0.945 45 H 0.071 0.929 46 H 0.051 0.949 47 H 0.055 0.945 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.312 -15.944 -5.238 17.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.122 4.122 3 C -0.097 4.097 4 C -0.165 4.165 5 C -0.192 4.192 6 C -0.208 4.208 7 H 0.140 0.860 8 C 0.326 3.674 9 O -0.417 6.417 10 N -0.321 5.321 11 C 0.121 3.879 12 C -0.563 4.563 13 H 0.074 0.926 14 C -0.141 4.141 15 N -0.534 5.534 16 Si 0.723 3.277 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.210 1.210 20 C -0.002 4.002 21 C -0.088 4.088 22 C -0.200 4.200 23 C -0.201 4.201 24 C -0.194 4.194 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.090 0.910 46 H 0.070 0.930 47 H 0.075 0.925 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.598 -15.446 -4.693 16.540 hybrid contribution 0.196 0.896 -0.715 1.163 sum -3.402 -14.550 -5.408 15.891 Atomic orbital electron populations 1.21821 0.95594 1.01005 1.02312 1.21050 0.95981 0.93534 1.01625 1.21541 0.91966 0.96421 0.99730 1.21445 0.96776 0.97143 1.01138 1.23175 1.02828 1.02520 0.90717 1.22721 0.95218 1.00385 1.02450 0.85992 1.19356 0.82092 0.83620 0.82364 1.90645 1.57006 1.56910 1.37123 1.48090 1.09576 1.26089 1.48305 1.19416 0.95328 0.79309 0.93798 1.21504 1.39796 0.92077 1.02896 0.92599 1.24914 0.95191 0.98728 0.95222 1.69939 1.41528 1.22657 1.19235 0.86494 0.77781 0.82635 0.80811 1.19878 1.20941 1.21012 1.21480 0.93320 0.93155 0.92242 1.20990 0.95879 0.95603 0.96368 1.22036 0.99131 0.99328 0.99554 1.22007 0.98972 0.99845 0.99280 1.21807 0.99580 0.98916 0.99125 0.93151 0.91950 0.92641 0.92067 0.91715 0.92230 0.93162 0.90869 0.88497 0.88654 0.94084 0.94061 0.92862 0.90344 0.91496 0.91923 0.93107 0.93016 0.93684 0.92589 0.90969 0.92970 0.92548 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 8.92 37.16 0.33 -1.16 16 2 C -0.08 -0.94 6.12 -26.73 -0.16 -1.11 16 3 C -0.10 -1.37 2.47 -154.47 -0.38 -1.76 16 4 C -0.11 -1.75 7.75 37.16 0.29 -1.46 16 5 C -0.16 -2.20 9.53 -26.69 -0.25 -2.46 16 6 C -0.19 -2.94 3.77 -91.77 -0.35 -3.29 16 7 H 0.12 1.68 4.72 -51.93 -0.24 1.43 16 8 C 0.54 11.19 5.51 -10.99 -0.06 11.13 16 9 O -0.54 -13.30 12.88 5.56 0.07 -13.22 16 10 N -0.59 -12.36 1.94 -175.06 -0.34 -12.70 16 11 C 0.24 6.20 4.33 -5.19 -0.02 6.18 16 12 C -0.52 -14.80 9.39 -34.44 -0.32 -15.13 16 13 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 14 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 15 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 16 Si 0.89 21.97 29.54 -169.99 -5.02 16.94 16 17 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 C 0.12 2.04 4.49 -4.04 -0.02 2.02 16 21 C -0.09 -1.24 0.85 -154.51 -0.13 -1.37 16 22 C -0.14 -1.98 7.09 37.16 0.26 -1.72 16 23 C -0.14 -2.26 7.47 37.16 0.28 -1.99 16 24 C -0.14 -1.54 8.46 37.15 0.31 -1.22 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.64 6.45 -51.93 -0.33 0.31 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.60 7.90 -51.93 -0.41 0.19 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 1.10 7.40 -51.93 -0.38 0.72 16 31 H 0.05 0.67 5.58 -51.93 -0.29 0.38 16 32 H 0.07 1.33 6.95 -51.93 -0.36 0.97 16 33 H 0.10 1.55 8.05 -51.93 -0.42 1.14 16 34 H 0.10 1.10 8.05 -51.93 -0.42 0.68 16 35 H 0.04 1.21 7.35 -51.93 -0.38 0.83 16 36 H 0.04 1.07 5.64 -51.93 -0.29 0.77 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.08 1.38 8.09 -51.93 -0.42 0.96 16 39 H 0.07 0.98 6.50 -51.93 -0.34 0.64 16 40 H 0.06 1.05 5.71 -51.93 -0.30 0.75 16 41 H 0.05 0.64 8.13 -51.93 -0.42 0.22 16 42 H 0.05 0.62 6.26 -51.93 -0.32 0.30 16 43 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.07 1.36 5.66 -51.93 -0.29 1.07 16 46 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 360.29 15.07 5.43 5.43 Total: -1.00 -31.19 360.29 -8.00 -39.20 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -8.56 Total: 1.83 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -0.32 Total: -11.66 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.40 Total: -38.52 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.07 Total: -13.22 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.19 -8.00 -39.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129929383.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.449 kcal (2) G-P(sol) polarization free energy of solvation -31.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds