Wall clock time and date at job start Tue Mar 31 2020 05:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47213 * 2 1 4 4 C 1.53004 * 115.56026 * 34.31451 * 3 2 1 5 5 C 1.52992 * 117.49942 * 248.62370 * 3 2 1 6 6 C 1.52996 * 117.49845 * 179.97438 * 3 2 1 7 7 H 1.08999 * 117.50081 * 215.00116 * 6 3 2 8 8 C 1.50701 * 117.49958 * 0.02562 * 6 3 2 9 9 O 1.21281 * 119.99900 * 359.97438 * 8 6 3 10 10 N 1.34775 * 119.99891 * 179.97438 * 8 6 3 11 11 C 1.46500 * 119.99905 * 0.02562 * 10 8 6 12 12 C 1.50696 * 109.47323 * 90.00200 * 11 10 8 13 13 H 1.07995 * 120.00332 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99983 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00210 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00019 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46845 * 269.99914 * 16 14 12 18 18 H 1.48503 * 109.47399 * 29.99403 * 16 14 12 19 19 H 1.48498 * 109.47295 * 150.00010 * 16 14 12 20 20 C 1.46497 * 119.99856 * 179.97438 * 10 8 6 21 21 C 1.52998 * 109.47210 * 269.99969 * 20 10 8 22 22 C 1.53000 * 109.47252 * 180.02562 * 21 20 10 23 23 C 1.52998 * 109.47275 * 64.99746 * 22 21 20 24 24 C 1.53005 * 109.47032 * 185.00201 * 22 21 20 25 25 H 1.09002 * 109.47107 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47079 * 299.99936 * 1 2 3 27 27 H 1.08991 * 109.47317 * 59.99729 * 1 2 3 28 28 H 1.08993 * 109.47310 * 239.99948 * 2 1 3 29 29 H 1.08997 * 109.47261 * 119.99860 * 2 1 3 30 30 H 1.08994 * 109.46809 * 205.69110 * 4 3 2 31 31 H 1.09010 * 109.46595 * 325.68731 * 4 3 2 32 32 H 1.08999 * 109.47617 * 85.68757 * 4 3 2 33 33 H 1.08999 * 117.50021 * 145.02349 * 5 3 2 34 34 H 1.09004 * 117.50158 * 359.97438 * 5 3 2 35 35 H 1.09004 * 109.47134 * 329.99513 * 11 10 8 36 36 H 1.09010 * 109.47025 * 209.99947 * 11 10 8 37 37 H 0.97000 * 119.99462 * 359.97438 * 15 14 12 38 38 H 1.08991 * 109.47399 * 30.00187 * 20 10 8 39 39 H 1.09005 * 109.46788 * 150.00075 * 20 10 8 40 40 H 1.09006 * 109.47209 * 299.99943 * 21 20 10 41 41 H 1.08998 * 109.47025 * 59.99945 * 21 20 10 42 42 H 1.08999 * 109.46658 * 304.99933 * 22 21 20 43 43 H 1.08992 * 109.47386 * 300.00208 * 23 22 21 44 44 H 1.08999 * 109.47125 * 60.00473 * 23 22 21 45 45 H 1.09003 * 109.46867 * 179.97438 * 23 22 21 46 46 H 1.09000 * 109.47319 * 59.99665 * 24 22 21 47 47 H 1.09000 * 109.46572 * 179.97438 * 24 22 21 48 48 H 1.09005 * 109.46771 * 299.99339 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1852 2.4450 0.7781 5 6 2.7419 1.9437 -1.2637 6 6 3.5550 1.6562 0.0006 7 1 3.9426 2.5107 0.5552 8 6 4.4307 0.4297 0.0006 9 8 3.9282 -0.6742 0.0005 10 7 5.7722 0.5595 0.0006 11 6 6.3790 1.8929 0.0012 12 6 6.5873 2.3494 1.4221 13 1 6.2963 1.7105 2.2428 14 6 7.1484 3.5833 1.6746 15 7 7.5023 4.3617 0.6753 16 14 7.4058 4.1495 3.4360 17 1 6.1995 4.8791 3.9027 18 1 7.6379 2.9691 4.3066 19 1 8.5845 5.0506 3.4991 20 6 6.6234 -0.6328 0.0011 21 6 6.9197 -1.0473 1.4437 22 6 7.8093 -2.2921 1.4443 23 6 9.1695 -1.9472 0.8347 24 6 8.0032 -2.7797 2.8815 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.3351 3.4443 0.3697 31 1 0.1338 2.1707 0.6908 32 1 1.4776 2.4340 1.8281 33 1 2.5947 2.9875 -1.5408 34 1 2.8407 1.2456 -2.0950 35 1 5.7195 2.5925 -0.5124 36 1 7.3397 1.8551 -0.5128 37 1 7.3689 4.0674 -0.2393 38 1 6.1103 -1.4458 -0.5124 39 1 7.5589 -0.4115 -0.5128 40 1 7.4329 -0.2342 1.9573 41 1 5.9843 -1.2685 1.9576 42 1 7.3356 -3.0773 0.8550 43 1 9.0314 -1.5999 -0.1891 44 1 9.6432 -1.1620 1.4240 45 1 9.8034 -2.8340 0.8356 46 1 7.0341 -3.0254 3.3158 47 1 8.6366 -3.6668 2.8818 48 1 8.4769 -1.9944 3.4708 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134275658.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:49 Heat of formation + Delta-G solvation = -47.376445 kcal Electronic energy + Delta-G solvation = -23578.670444 eV Core-core repulsion = 20440.207843 eV Total energy + Delta-G solvation = -3138.462601 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.81414 -37.55197 -36.13605 -34.80737 -32.67183 -31.91223 -29.22885 -27.91286 -26.95522 -26.54153 -24.35646 -23.48802 -22.93767 -21.83134 -19.63359 -18.98739 -17.99197 -17.02525 -16.30631 -15.29575 -14.97678 -14.69917 -14.40009 -14.01036 -13.82504 -13.68047 -13.34929 -13.20063 -12.94972 -12.80618 -12.34938 -12.18426 -12.00209 -11.86709 -11.73093 -11.64575 -11.54012 -11.31047 -11.10287 -10.87831 -10.80039 -10.75235 -10.60014 -10.51962 -10.32281 -10.20841 -9.99448 -9.64437 -9.32138 -9.16083 -8.77736 -8.49000 -7.63929 -6.49196 -4.24690 3.19419 3.36488 3.38863 3.54724 3.86111 4.23001 4.42944 4.97900 5.04668 5.16377 5.21542 5.22767 5.24043 5.27503 5.32606 5.53492 5.60865 5.74994 5.80813 5.82558 5.86731 5.93465 5.98803 5.99439 6.01950 6.06693 6.08014 6.10092 6.16639 6.18848 6.29532 6.33415 6.40996 6.46755 6.48100 6.54340 6.61234 6.65343 6.71448 6.86083 6.88343 6.94594 7.47815 7.89481 8.16738 8.45197 8.68422 9.01541 9.46165 10.86410 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.010338 B = 0.006960 C = 0.004806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2707.818186 B = 4021.824133 C = 5824.181709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.070 4.070 3 C -0.098 4.098 4 C -0.120 4.120 5 C -0.153 4.153 6 C -0.170 4.170 7 H 0.134 0.866 8 C 0.546 3.454 9 O -0.569 6.569 10 N -0.589 5.589 11 C 0.229 3.771 12 C -0.611 4.611 13 H 0.056 0.944 14 C 0.024 3.976 15 N -0.907 5.907 16 Si 1.068 2.932 17 H -0.287 1.287 18 H -0.288 1.288 19 H -0.283 1.283 20 C 0.126 3.874 21 C -0.127 4.127 22 C -0.094 4.094 23 C -0.147 4.147 24 C -0.144 4.144 25 H 0.048 0.952 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.029 0.971 36 H 0.022 0.978 37 H 0.268 0.732 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.058 0.942 42 H 0.064 0.936 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.047 0.953 46 H 0.051 0.949 47 H 0.049 0.951 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.722 -7.708 -0.939 9.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.108 4.108 3 C -0.099 4.099 4 C -0.177 4.177 5 C -0.190 4.190 6 C -0.191 4.191 7 H 0.152 0.848 8 C 0.335 3.665 9 O -0.450 6.450 10 N -0.319 5.319 11 C 0.108 3.892 12 C -0.649 4.649 13 H 0.075 0.925 14 C -0.181 4.181 15 N -0.543 5.543 16 Si 0.896 3.104 17 H -0.213 1.213 18 H -0.214 1.214 19 H -0.209 1.209 20 C 0.002 3.998 21 C -0.165 4.165 22 C -0.113 4.113 23 C -0.204 4.204 24 C -0.201 4.201 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.047 0.953 36 H 0.040 0.960 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.066 0.934 46 H 0.070 0.930 47 H 0.068 0.932 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.363 -7.007 -0.031 8.823 hybrid contribution -0.262 -1.023 -0.853 1.357 sum -5.624 -8.030 -0.883 9.843 Atomic orbital electron populations 1.21943 0.97139 1.00786 1.01234 1.21014 0.93332 0.92840 1.03593 1.21527 0.91786 0.97046 0.99521 1.21476 0.99205 0.97214 0.99814 1.23116 1.02946 1.01808 0.91150 1.22444 0.92477 1.00152 1.03982 0.84815 1.19529 0.82391 0.89065 0.75484 1.90576 1.73999 1.27670 1.52766 1.47987 1.04906 1.08400 1.70563 1.19483 0.93207 0.78381 0.98087 1.22346 1.45614 1.04972 0.91987 0.92526 1.25760 0.93413 0.93169 1.05800 1.70797 1.44573 1.38774 1.00130 0.83548 0.77008 0.75800 0.74068 1.21333 1.21402 1.20902 1.21308 0.93896 0.87768 0.96794 1.22000 0.99481 0.97272 0.97784 1.21062 0.96078 0.97721 0.96413 1.21881 0.96553 1.00969 1.01048 1.21809 1.01232 1.00546 0.96550 0.93321 0.92708 0.93197 0.91303 0.90997 0.92539 0.91468 0.92138 0.88456 0.89056 0.95320 0.95992 0.92131 0.91509 0.91352 0.90254 0.92316 0.91775 0.92616 0.92398 0.93383 0.92978 0.93230 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 8.92 37.16 0.33 -1.60 16 2 C -0.07 -1.12 4.36 -26.73 -0.12 -1.24 16 3 C -0.10 -1.58 2.47 -154.51 -0.38 -1.96 16 4 C -0.12 -1.65 9.49 37.16 0.35 -1.30 16 5 C -0.15 -2.45 9.53 -26.71 -0.25 -2.71 16 6 C -0.17 -3.25 4.52 -91.75 -0.41 -3.66 16 7 H 0.13 2.83 7.00 -51.93 -0.36 2.47 16 8 C 0.55 11.58 7.44 -10.99 -0.08 11.50 16 9 O -0.57 -12.52 12.68 5.56 0.07 -12.45 16 10 N -0.59 -12.60 2.46 -175.06 -0.43 -13.03 16 11 C 0.23 5.41 4.16 -5.20 -0.02 5.38 16 12 C -0.61 -15.81 8.61 -34.44 -0.30 -16.11 16 13 H 0.06 1.52 7.42 -52.49 -0.39 1.13 16 14 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 15 N -0.91 -25.60 13.65 55.43 0.76 -24.85 16 16 Si 1.07 24.15 29.90 -169.99 -5.08 19.07 16 17 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 C 0.13 2.37 5.21 -4.04 -0.02 2.35 16 21 C -0.13 -2.29 5.01 -26.73 -0.13 -2.43 16 22 C -0.09 -1.36 2.92 -90.62 -0.26 -1.63 16 23 C -0.15 -2.00 8.95 37.16 0.33 -1.67 16 24 C -0.14 -1.91 9.19 37.16 0.34 -1.57 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.64 6.45 -51.93 -0.33 0.30 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 1.19 7.01 -51.93 -0.36 0.82 16 29 H 0.07 1.29 7.26 -51.93 -0.38 0.92 16 30 H 0.06 0.74 7.90 -51.93 -0.41 0.33 16 31 H 0.07 0.79 5.59 -51.92 -0.29 0.50 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.10 1.41 8.05 -51.93 -0.42 0.99 16 34 H 0.09 1.45 8.05 -51.93 -0.42 1.03 16 35 H 0.03 0.70 6.51 -51.93 -0.34 0.36 16 36 H 0.02 0.54 7.76 -51.92 -0.40 0.14 16 37 H 0.27 7.48 7.22 -40.82 -0.29 7.19 16 38 H 0.07 1.25 7.42 -51.93 -0.39 0.86 16 39 H 0.07 1.23 6.32 -51.93 -0.33 0.90 16 40 H 0.08 1.62 7.26 -51.93 -0.38 1.24 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.05 0.76 6.56 -51.93 -0.34 0.41 16 44 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 48 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 371.42 15.07 5.60 5.60 Total: -1.00 -28.08 371.42 -8.67 -36.75 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -8.85 Total: 5.01 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: -0.72 Total: -16.10 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.33 Total: -37.88 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.07 Total: -12.45 kcal Atomic # 14 Polarization: 24.15 SS G_CDS: -5.08 Total: 19.07 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.08 -8.67 -36.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134275658.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.626 kcal (2) G-P(sol) polarization free energy of solvation -28.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds