Wall clock time and date at job start Tue Mar 31 2020 05:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46919 * 2 1 4 4 C 1.52994 * 115.55197 * 325.66675 * 3 2 1 5 5 C 1.52999 * 117.49804 * 111.38077 * 3 2 1 6 6 C 1.53001 * 60.00190 * 107.48732 * 5 3 2 7 7 H 1.09002 * 117.49822 * 252.51020 * 6 5 3 8 8 C 1.50701 * 117.51956 * 107.47765 * 6 5 3 9 9 O 1.21279 * 120.00290 * 291.28789 * 8 6 5 10 10 N 1.34778 * 119.99999 * 111.28092 * 8 6 5 11 11 C 1.46499 * 119.99860 * 0.02562 * 10 8 6 12 12 C 1.50708 * 109.47184 * 89.99529 * 11 10 8 13 13 H 1.07998 * 119.99965 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99948 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99560 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 119.99985 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47359 * 90.00148 * 16 14 12 18 18 H 1.48501 * 109.46968 * 209.99961 * 16 14 12 19 19 H 1.48503 * 109.47377 * 329.99954 * 16 14 12 20 20 C 1.46501 * 120.00183 * 180.02562 * 10 8 6 21 21 C 1.52996 * 109.46869 * 90.00418 * 20 10 8 22 22 C 1.52998 * 109.47154 * 179.97438 * 21 20 10 23 23 C 1.53005 * 109.47387 * 174.99992 * 22 21 20 24 24 C 1.52997 * 109.47120 * 295.00127 * 22 21 20 25 25 H 1.08999 * 109.47049 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47306 * 300.00123 * 1 2 3 27 27 H 1.08998 * 109.47249 * 60.00095 * 1 2 3 28 28 H 1.09006 * 109.47158 * 240.00161 * 2 1 3 29 29 H 1.08998 * 109.47249 * 119.99905 * 2 1 3 30 30 H 1.08999 * 109.47594 * 274.33188 * 4 3 2 31 31 H 1.09008 * 109.46710 * 34.33161 * 4 3 2 32 32 H 1.09001 * 109.47338 * 154.32594 * 4 3 2 33 33 H 1.09001 * 117.50150 * 359.97438 * 5 3 2 34 34 H 1.08995 * 117.49529 * 214.97558 * 5 3 2 35 35 H 1.08999 * 109.47569 * 209.99475 * 11 10 8 36 36 H 1.08997 * 109.47298 * 329.99748 * 11 10 8 37 37 H 0.97006 * 119.99556 * 179.97438 * 15 14 12 38 38 H 1.08999 * 109.46905 * 210.00379 * 20 10 8 39 39 H 1.09000 * 109.47291 * 330.00578 * 20 10 8 40 40 H 1.09002 * 109.47593 * 300.00144 * 21 20 10 41 41 H 1.08995 * 109.47475 * 59.99901 * 21 20 10 42 42 H 1.09002 * 109.47234 * 54.99985 * 22 21 20 43 43 H 1.08994 * 109.46774 * 60.00081 * 23 22 21 44 44 H 1.08996 * 109.46839 * 180.02562 * 23 22 21 45 45 H 1.09007 * 109.46937 * 300.00092 * 23 22 21 46 46 H 1.09000 * 109.47569 * 60.00230 * 24 22 21 47 47 H 1.09008 * 109.46828 * 179.97438 * 24 22 21 48 48 H 1.08993 * 109.47239 * 299.99261 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.1852 2.4446 -0.7785 5 6 2.7418 1.9437 1.2637 6 6 3.5550 1.6562 0.0000 7 1 4.1883 0.7691 0.0000 8 6 4.0910 2.8376 -0.7669 9 8 3.3289 3.5753 -1.3549 10 7 5.4174 3.0745 -0.7991 11 6 6.3381 2.1831 -0.0892 12 6 6.7696 1.0702 -1.0093 13 1 6.3957 1.0311 -2.0218 14 6 7.6424 0.1026 -0.5589 15 7 8.0193 -0.8682 -1.3620 16 14 8.2896 0.1707 1.1921 17 1 7.3785 -0.5876 2.0865 18 1 9.6463 -0.4312 1.2421 19 1 8.3587 1.5849 1.6398 20 6 5.9385 4.2232 -1.5441 21 6 6.0024 5.4425 -0.6221 22 6 6.5472 6.6421 -1.3999 23 6 6.4945 7.8898 -0.5158 24 6 7.9955 6.3687 -1.8103 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.4777 2.4332 -1.8285 31 1 0.1338 2.1703 -0.6912 32 1 1.3350 3.4442 -0.3704 33 1 2.8400 1.2458 2.0953 34 1 2.5946 2.9875 1.5408 35 1 7.2131 2.7470 0.2340 36 1 5.8362 1.7607 0.7813 37 1 8.6337 -1.5488 -1.0452 38 1 6.9382 3.9938 -1.9130 39 1 5.2810 4.4387 -2.3863 40 1 5.0027 5.6719 -0.2531 41 1 6.6599 5.2271 0.2202 42 1 5.9411 6.8027 -2.2915 43 1 7.1007 7.7291 0.3757 44 1 6.8823 8.7444 -1.0701 45 1 5.4626 8.0846 -0.2234 46 1 8.0331 5.4799 -2.4402 47 1 8.3835 7.2232 -2.3649 48 1 8.6017 6.2082 -0.9188 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134275676.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:51 Heat of formation + Delta-G solvation = -39.971134 kcal Electronic energy + Delta-G solvation = -23385.070345 eV Core-core repulsion = 20246.928862 eV Total energy + Delta-G solvation = -3138.141483 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.81116 -37.59539 -36.24803 -34.75536 -32.50379 -31.98136 -29.55264 -27.88087 -27.32805 -27.00607 -24.49808 -23.54349 -22.70811 -21.76514 -19.78375 -18.80432 -17.75713 -17.00073 -16.51290 -15.43787 -15.15883 -14.69721 -14.43207 -14.34692 -14.05149 -13.76141 -13.53274 -13.00587 -12.76205 -12.53674 -12.47476 -12.25187 -12.10051 -11.97454 -11.90804 -11.78186 -11.66064 -11.41261 -11.18304 -10.89766 -10.80820 -10.78389 -10.62333 -10.55671 -10.47869 -10.28956 -10.13336 -9.67363 -9.60869 -9.31407 -8.78507 -8.69871 -7.68523 -6.21241 -4.22480 3.16706 3.20571 3.25397 3.26385 3.81179 4.24124 4.26564 4.90283 5.02895 5.05488 5.09471 5.09964 5.12322 5.25406 5.31584 5.49333 5.52370 5.66887 5.69774 5.80440 5.82662 5.83563 5.86807 5.95669 5.98103 6.01552 6.07068 6.08954 6.17239 6.22345 6.27012 6.33201 6.35336 6.36721 6.43083 6.49789 6.52004 6.58107 6.62316 6.63573 6.73488 6.90072 7.40972 7.47000 8.17545 8.44248 8.84525 9.01363 9.38598 10.91491 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.009638 B = 0.007177 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2904.536615 B = 3900.651021 C = 6158.236069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.097 4.097 4 C -0.101 4.101 5 C -0.154 4.154 6 C -0.173 4.173 7 H 0.135 0.865 8 C 0.548 3.452 9 O -0.565 6.565 10 N -0.588 5.588 11 C 0.210 3.790 12 C -0.539 4.539 13 H 0.078 0.922 14 C 0.076 3.924 15 N -0.891 5.891 16 Si 0.870 3.130 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.264 1.264 20 C 0.120 3.880 21 C -0.127 4.127 22 C -0.093 4.093 23 C -0.144 4.144 24 C -0.150 4.150 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.031 0.969 36 H 0.031 0.969 37 H 0.266 0.734 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.052 0.948 44 H 0.051 0.949 45 H 0.052 0.948 46 H 0.061 0.939 47 H 0.049 0.951 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.402 8.765 4.443 12.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 C -0.097 4.097 4 C -0.158 4.158 5 C -0.192 4.192 6 C -0.193 4.193 7 H 0.153 0.847 8 C 0.337 3.663 9 O -0.446 6.446 10 N -0.317 5.317 11 C 0.088 3.912 12 C -0.578 4.578 13 H 0.096 0.904 14 C -0.127 4.127 15 N -0.529 5.529 16 Si 0.696 3.304 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.189 1.189 20 C -0.003 4.003 21 C -0.166 4.166 22 C -0.113 4.113 23 C -0.202 4.202 24 C -0.208 4.208 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.115 0.885 34 H 0.110 0.890 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.080 0.920 47 H 0.068 0.932 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.636 8.973 4.124 12.483 hybrid contribution 0.842 -0.296 0.963 1.313 sum -6.794 8.677 5.087 12.138 Atomic orbital electron populations 1.21813 0.95784 1.01015 1.01930 1.21074 0.95603 0.93541 1.02310 1.21519 0.92098 0.96505 0.99590 1.21389 0.96757 0.97134 1.00530 1.23121 1.03082 1.01960 0.91004 1.22457 0.94901 1.00617 1.01358 0.84679 1.19512 0.81987 0.84463 0.80311 1.90583 1.56987 1.49999 1.47062 1.47851 1.06050 1.27157 1.50621 1.19780 0.88890 0.89677 0.92814 1.21410 1.27977 1.07927 1.00458 0.90435 1.24874 0.95607 0.94960 0.97280 1.69897 1.33671 1.13501 1.35808 0.86944 0.78978 0.79022 0.85419 1.19861 1.20908 1.18874 1.21364 0.99947 0.84738 0.94277 1.21994 1.01082 0.94531 0.98952 1.21045 0.96882 0.94702 0.98625 1.21821 1.01459 0.97225 0.99669 1.21910 0.95852 1.01528 1.01463 0.93110 0.92833 0.92156 0.91299 0.91809 0.91650 0.93277 0.92169 0.88495 0.88992 0.95058 0.95121 0.92407 0.90222 0.90961 0.92045 0.92064 0.91246 0.92878 0.93019 0.92935 0.91969 0.93172 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.92 37.15 0.33 -1.36 16 2 C -0.09 -1.21 6.12 -26.73 -0.16 -1.38 16 3 C -0.10 -1.53 2.47 -154.51 -0.38 -1.91 16 4 C -0.10 -1.60 7.73 37.15 0.29 -1.31 16 5 C -0.15 -2.38 9.53 -26.73 -0.25 -2.63 16 6 C -0.17 -3.23 4.52 -91.77 -0.41 -3.64 16 7 H 0.14 2.77 7.00 -51.93 -0.36 2.40 16 8 C 0.55 11.39 7.44 -10.98 -0.08 11.30 16 9 O -0.57 -12.26 12.68 5.56 0.07 -12.19 16 10 N -0.59 -12.24 2.46 -175.06 -0.43 -12.67 16 11 C 0.21 4.70 3.87 -5.19 -0.02 4.68 16 12 C -0.54 -14.31 9.63 -34.44 -0.33 -14.64 16 13 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 14 C 0.08 2.06 5.47 -17.82 -0.10 1.97 16 15 N -0.89 -25.95 13.96 55.43 0.77 -25.18 16 16 Si 0.87 19.91 27.47 -169.99 -4.67 15.24 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.26 -5.75 6.54 56.52 0.37 -5.38 16 20 C 0.12 2.20 5.16 -4.04 -0.02 2.18 16 21 C -0.13 -1.97 5.01 -26.73 -0.13 -2.10 16 22 C -0.09 -1.21 2.92 -90.62 -0.26 -1.47 16 23 C -0.14 -1.62 9.19 37.16 0.34 -1.27 16 24 C -0.15 -1.86 8.95 37.16 0.33 -1.53 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.68 6.45 -51.93 -0.33 0.35 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 0.84 7.90 -51.93 -0.41 0.43 16 30 H 0.06 1.16 7.25 -51.93 -0.38 0.78 16 31 H 0.05 0.65 5.58 -51.92 -0.29 0.36 16 32 H 0.06 1.01 7.02 -51.93 -0.36 0.64 16 33 H 0.10 1.32 8.05 -51.93 -0.42 0.90 16 34 H 0.09 1.39 8.05 -51.93 -0.42 0.97 16 35 H 0.03 0.70 7.13 -51.93 -0.37 0.33 16 36 H 0.03 0.67 6.07 -51.93 -0.32 0.36 16 37 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.08 1.47 6.49 -51.93 -0.34 1.14 16 39 H 0.07 1.37 7.42 -51.93 -0.39 0.98 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 46 H 0.06 0.82 6.56 -51.93 -0.34 0.48 16 47 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 48 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 371.16 15.07 5.59 5.59 Total: -1.00 -28.89 371.16 -8.50 -37.39 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -8.96 Total: 4.93 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -0.87 Total: -13.12 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 0.34 Total: -37.84 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.07 Total: -12.19 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.67 Total: 15.24 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -28.89 -8.50 -37.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134275676.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.585 kcal (2) G-P(sol) polarization free energy of solvation -28.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds