Wall clock time and date at job start Tue Mar 31 2020 05:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46879 * 2 1 4 4 C 1.52998 * 115.55162 * 34.32537 * 3 2 1 5 5 C 1.53003 * 117.49717 * 248.61932 * 3 2 1 6 6 C 1.52991 * 60.00033 * 252.50922 * 5 3 2 7 7 H 1.08999 * 117.51999 * 107.48080 * 6 5 3 8 8 C 1.50696 * 117.50193 * 252.50802 * 6 5 3 9 9 O 1.21286 * 119.99886 * 68.61955 * 8 6 5 10 10 N 1.34770 * 120.00499 * 248.62490 * 8 6 5 11 11 C 1.46503 * 119.99985 * 359.97438 * 10 8 6 12 12 C 1.50699 * 109.46825 * 89.99806 * 11 10 8 13 13 H 1.07999 * 120.00803 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99889 * 180.02562 * 12 11 10 15 15 N 1.31520 * 120.00186 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 120.00030 * 0.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 89.99863 * 16 14 12 18 18 H 1.48503 * 109.47261 * 330.00044 * 16 14 12 19 19 H 1.48500 * 109.47454 * 210.00037 * 16 14 12 20 20 C 1.46500 * 120.00642 * 179.97438 * 10 8 6 21 21 C 1.53000 * 109.47329 * 270.00466 * 20 10 8 22 22 C 1.53001 * 109.47084 * 179.97438 * 21 20 10 23 23 C 1.53000 * 109.47017 * 175.00024 * 22 21 20 24 24 C 1.53004 * 109.46914 * 294.99719 * 22 21 20 25 25 H 1.09003 * 109.47230 * 300.00041 * 1 2 3 26 26 H 1.09002 * 109.47154 * 60.00220 * 1 2 3 27 27 H 1.09003 * 109.47185 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47728 * 239.99907 * 2 1 3 29 29 H 1.09001 * 109.47479 * 119.99342 * 2 1 3 30 30 H 1.09001 * 109.47302 * 205.67557 * 4 3 2 31 31 H 1.08995 * 109.47197 * 325.67165 * 4 3 2 32 32 H 1.09003 * 109.46890 * 85.67518 * 4 3 2 33 33 H 1.08996 * 117.49979 * 145.01648 * 5 3 2 34 34 H 1.09006 * 117.49729 * 0.02562 * 5 3 2 35 35 H 1.09004 * 109.46958 * 330.00217 * 11 10 8 36 36 H 1.08997 * 109.47731 * 209.99893 * 11 10 8 37 37 H 0.96998 * 120.00124 * 180.02562 * 15 14 12 38 38 H 1.09010 * 109.46689 * 30.00052 * 20 10 8 39 39 H 1.09003 * 109.47452 * 149.99727 * 20 10 8 40 40 H 1.08996 * 109.46932 * 299.99448 * 21 20 10 41 41 H 1.08999 * 109.47094 * 59.99619 * 21 20 10 42 42 H 1.08994 * 109.47305 * 54.99543 * 22 21 20 43 43 H 1.08994 * 109.47475 * 59.99624 * 23 22 21 44 44 H 1.09004 * 109.46776 * 179.97438 * 23 22 21 45 45 H 1.08996 * 109.46843 * 299.99564 * 23 22 21 46 46 H 1.09001 * 109.46838 * 180.02562 * 24 22 21 47 47 H 1.09002 * 109.47253 * 299.99850 * 24 22 21 48 48 H 1.08998 * 109.47026 * 60.00385 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.1851 2.4447 0.7784 5 6 2.7419 1.9437 -1.2638 6 6 3.5549 1.6563 -0.0001 7 1 4.1883 0.7693 0.0004 8 6 4.0909 2.8380 0.7662 9 8 3.3286 3.5770 1.3526 10 7 5.4174 3.0739 0.8000 11 6 6.3384 2.1811 0.0922 12 6 6.5404 2.6810 -1.3150 13 1 6.0339 3.5746 -1.6487 14 6 7.3721 1.9976 -2.1767 15 7 7.5488 2.4341 -3.4047 16 14 8.2477 0.4516 -1.6000 17 1 7.3962 -0.7327 -1.8785 18 1 8.5052 0.5439 -0.1403 19 1 9.5378 0.3146 -2.3225 20 6 5.9385 4.2230 1.5445 21 6 6.0044 5.4414 0.6214 22 6 6.5480 6.6416 1.3992 23 6 6.7315 7.8254 0.4474 24 6 5.5603 7.0234 2.5035 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 1.3349 3.4442 0.3702 31 1 0.1338 2.1705 0.6910 32 1 1.4776 2.4333 1.8283 33 1 2.5946 2.9875 -1.5410 34 1 2.8400 1.2458 -2.0954 35 1 5.9194 1.1752 0.0638 36 1 7.2964 2.1611 0.6117 37 1 8.1336 1.9531 -4.0110 38 1 5.2800 4.4397 2.3858 39 1 6.9376 3.9932 1.9149 40 1 6.6628 5.2247 -0.2197 41 1 5.0053 5.6711 0.2511 42 1 7.5082 6.3813 1.8446 43 1 5.7714 8.0857 0.0020 44 1 7.1183 8.6806 1.0016 45 1 7.4351 7.5533 -0.3393 46 1 5.9474 7.8788 3.0573 47 1 4.6001 7.2838 2.0582 48 1 5.4296 6.1801 3.1816 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134275697.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:53 Heat of formation + Delta-G solvation = -37.223969 kcal Electronic energy + Delta-G solvation = -23565.857108 eV Core-core repulsion = 20427.834752 eV Total energy + Delta-G solvation = -3138.022357 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.78914 -37.53849 -36.11810 -34.72790 -32.45828 -31.97214 -29.41301 -27.87617 -27.31745 -26.89655 -24.45756 -23.52286 -22.53492 -21.83933 -19.61850 -18.74318 -17.75155 -17.04204 -16.50156 -15.37549 -14.89512 -14.79120 -14.45116 -14.24476 -13.95450 -13.61406 -13.31832 -13.17134 -12.69833 -12.53980 -12.35659 -12.24082 -11.97103 -11.95653 -11.85366 -11.72488 -11.55674 -11.38713 -11.18180 -10.85289 -10.81871 -10.67293 -10.56988 -10.55959 -10.29474 -10.16202 -10.00189 -9.59313 -9.49039 -9.29691 -8.76621 -8.65737 -7.67552 -6.18035 -4.17742 3.17543 3.25343 3.25953 3.27333 3.78622 4.28600 4.34505 4.94314 5.07884 5.11698 5.18358 5.27773 5.28452 5.29724 5.35927 5.49788 5.53101 5.73335 5.79784 5.83946 5.84359 5.94067 6.02694 6.02779 6.07132 6.13093 6.14285 6.22766 6.23947 6.28295 6.32017 6.36354 6.41503 6.43687 6.48209 6.53319 6.54070 6.59319 6.71703 6.79900 6.91151 6.99506 7.42277 7.49475 8.18848 8.46176 8.88038 9.01975 9.42084 10.94655 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.009810 B = 0.007463 C = 0.004704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2853.529041 B = 3750.781546 C = 5951.224711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.086 4.086 3 C -0.108 4.108 4 C -0.100 4.100 5 C -0.130 4.130 6 C -0.167 4.167 7 H 0.118 0.882 8 C 0.548 3.452 9 O -0.565 6.565 10 N -0.589 5.589 11 C 0.208 3.792 12 C -0.529 4.529 13 H 0.080 0.920 14 C 0.075 3.925 15 N -0.893 5.893 16 Si 0.868 3.132 17 H -0.274 1.274 18 H -0.265 1.265 19 H -0.284 1.284 20 C 0.125 3.875 21 C -0.128 4.128 22 C -0.094 4.094 23 C -0.144 4.144 24 C -0.146 4.146 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.029 0.971 36 H 0.030 0.970 37 H 0.265 0.735 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.081 0.919 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.051 0.949 44 H 0.047 0.953 45 H 0.056 0.944 46 H 0.046 0.954 47 H 0.053 0.947 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.851 0.220 8.182 10.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.123 4.123 3 C -0.109 4.109 4 C -0.157 4.157 5 C -0.167 4.167 6 C -0.188 4.188 7 H 0.136 0.864 8 C 0.337 3.663 9 O -0.446 6.446 10 N -0.318 5.318 11 C 0.087 3.913 12 C -0.568 4.568 13 H 0.098 0.902 14 C -0.127 4.127 15 N -0.531 5.531 16 Si 0.695 3.305 17 H -0.200 1.200 18 H -0.190 1.190 19 H -0.210 1.210 20 C 0.001 3.999 21 C -0.166 4.166 22 C -0.113 4.113 23 C -0.202 4.202 24 C -0.203 4.203 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.112 0.888 34 H 0.117 0.883 35 H 0.047 0.953 36 H 0.048 0.952 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.075 0.925 46 H 0.065 0.935 47 H 0.072 0.928 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.107 0.559 8.320 10.956 hybrid contribution 0.973 -0.922 -0.124 1.347 sum -6.133 -0.363 8.195 10.243 Atomic orbital electron populations 1.21812 0.95719 1.00933 1.02107 1.21056 0.95761 0.93703 1.01827 1.21608 0.91936 0.96379 1.00940 1.21374 0.96693 0.97437 1.00189 1.23004 1.00767 1.02385 0.90555 1.22222 0.94083 0.99638 1.02839 0.86407 1.19495 0.81919 0.85033 0.79873 1.90589 1.56785 1.50139 1.47039 1.47882 1.06238 1.27638 1.50064 1.19833 0.88733 0.89418 0.93308 1.21365 1.28254 1.12972 0.94161 0.90196 1.24859 0.96065 0.97138 0.94687 1.69889 1.37778 1.39889 1.05497 0.86984 0.79875 0.84235 0.79450 1.19993 1.19003 1.20985 1.21347 0.98477 0.85765 0.94264 1.22007 1.02031 0.93280 0.99285 1.21065 0.98790 0.95460 0.95967 1.21806 1.01667 0.97381 0.99315 1.21875 0.99337 1.00661 0.98405 0.92195 0.92603 0.93210 0.91769 0.91901 0.92005 0.93350 0.91948 0.88778 0.88332 0.95349 0.95181 0.92515 0.90983 0.91594 0.90003 0.92213 0.91565 0.92948 0.93341 0.92482 0.93504 0.92812 0.92595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.92 37.16 0.33 -1.30 16 2 C -0.09 -1.12 6.12 -26.73 -0.16 -1.28 16 3 C -0.11 -1.70 2.47 -154.51 -0.38 -2.08 16 4 C -0.10 -1.57 7.73 37.16 0.29 -1.28 16 5 C -0.13 -2.26 9.53 -26.73 -0.25 -2.52 16 6 C -0.17 -3.10 5.01 -91.78 -0.46 -3.56 16 7 H 0.12 2.16 6.44 -51.93 -0.33 1.83 16 8 C 0.55 11.27 7.44 -10.99 -0.08 11.19 16 9 O -0.56 -12.12 12.68 5.55 0.07 -12.05 16 10 N -0.59 -12.16 2.46 -175.05 -0.43 -12.59 16 11 C 0.21 4.63 4.10 -5.19 -0.02 4.61 16 12 C -0.53 -13.75 9.48 -34.44 -0.33 -14.08 16 13 H 0.08 2.33 7.67 -52.49 -0.40 1.92 16 14 C 0.08 2.02 5.47 -17.82 -0.10 1.93 16 15 N -0.89 -25.79 13.96 55.43 0.77 -25.01 16 16 Si 0.87 19.85 27.47 -169.99 -4.67 15.19 16 17 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.27 -5.78 6.54 56.52 0.37 -5.41 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 C 0.12 2.27 5.21 -4.04 -0.02 2.25 16 21 C -0.13 -2.30 5.01 -26.73 -0.13 -2.43 16 22 C -0.09 -1.36 2.92 -90.62 -0.26 -1.63 16 23 C -0.14 -1.97 9.19 37.16 0.34 -1.63 16 24 C -0.15 -1.94 8.95 37.16 0.33 -1.61 16 25 H 0.06 0.64 6.45 -51.93 -0.33 0.31 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.81 7.90 -51.93 -0.41 0.40 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 1.08 7.02 -51.93 -0.36 0.71 16 31 H 0.05 0.64 5.58 -51.93 -0.29 0.35 16 32 H 0.06 1.05 7.26 -51.93 -0.38 0.67 16 33 H 0.09 1.73 8.05 -51.93 -0.42 1.32 16 34 H 0.10 1.62 8.05 -51.93 -0.42 1.21 16 35 H 0.03 0.62 5.42 -51.93 -0.28 0.34 16 36 H 0.03 0.66 6.95 -51.93 -0.36 0.30 16 37 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 38 H 0.07 1.29 5.84 -51.92 -0.30 0.98 16 39 H 0.07 1.12 7.89 -51.93 -0.41 0.71 16 40 H 0.08 1.70 7.26 -51.93 -0.38 1.32 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.06 0.75 6.56 -51.93 -0.34 0.41 16 LS Contribution 368.92 15.07 5.56 5.56 Total: -1.00 -28.44 368.92 -8.42 -36.87 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -8.82 Total: 5.45 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: -0.91 Total: -13.41 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: 0.34 Total: -37.60 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.07 Total: -12.05 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.67 Total: 15.19 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.44 -8.42 -36.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134275697.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.357 kcal (2) G-P(sol) polarization free energy of solvation -28.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds