Wall clock time and date at job start Tue Mar 31 2020 05:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47399 * 2 1 4 4 C 1.53002 * 115.54833 * 325.67456 * 3 2 1 5 5 C 1.53082 * 117.51446 * 111.39291 * 3 2 1 6 6 C 1.53002 * 117.50173 * 180.02562 * 3 2 1 7 7 H 1.08996 * 117.49917 * 145.00080 * 6 3 2 8 8 C 1.50698 * 117.49974 * 0.02562 * 6 3 2 9 9 O 1.21280 * 119.99955 * 0.08402 * 8 6 3 10 10 N 1.34771 * 120.00324 * 180.09096 * 8 6 3 11 11 C 1.46495 * 120.00330 * 180.02562 * 10 8 6 12 12 C 1.50702 * 109.47571 * 89.99769 * 11 10 8 13 13 H 1.08002 * 119.99446 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00072 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99826 * 179.72119 * 14 12 11 16 16 Si 1.86800 * 120.00406 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.46758 * 269.72576 * 16 14 12 18 18 H 1.48499 * 109.47026 * 29.72423 * 16 14 12 19 19 H 1.48496 * 109.47474 * 149.72459 * 16 14 12 20 20 C 1.46498 * 119.99856 * 359.97438 * 10 8 6 21 21 C 1.53000 * 109.47595 * 270.00430 * 20 10 8 22 22 C 1.53000 * 109.47467 * 179.97438 * 21 20 10 23 23 C 1.53002 * 109.46978 * 174.99845 * 22 21 20 24 24 C 1.52995 * 109.47316 * 295.00320 * 22 21 20 25 25 H 1.09001 * 109.46924 * 299.99752 * 1 2 3 26 26 H 1.08997 * 109.47271 * 60.00010 * 1 2 3 27 27 H 1.09003 * 109.47119 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47634 * 240.00067 * 2 1 3 29 29 H 1.09006 * 109.47561 * 120.00504 * 2 1 3 30 30 H 1.09004 * 109.46501 * 274.32255 * 4 3 2 31 31 H 1.08997 * 109.47498 * 34.32308 * 4 3 2 32 32 H 1.09000 * 109.47301 * 154.33341 * 4 3 2 33 33 H 1.09002 * 117.51154 * 359.97438 * 5 3 2 34 34 H 1.08997 * 117.48794 * 214.96817 * 5 3 2 35 35 H 1.09000 * 109.47378 * 329.99429 * 11 10 8 36 36 H 1.09001 * 109.47153 * 209.99549 * 11 10 8 37 37 H 0.96999 * 120.00128 * 180.27192 * 15 14 12 38 38 H 1.09008 * 109.47270 * 30.00357 * 20 10 8 39 39 H 1.09000 * 109.47529 * 150.00386 * 20 10 8 40 40 H 1.08998 * 109.46668 * 300.00155 * 21 20 10 41 41 H 1.09007 * 109.47048 * 59.99634 * 21 20 10 42 42 H 1.09004 * 109.46946 * 55.00161 * 22 21 20 43 43 H 1.08997 * 109.47333 * 60.00615 * 23 22 21 44 44 H 1.08995 * 109.46861 * 180.02562 * 23 22 21 45 45 H 1.08999 * 109.46967 * 300.00087 * 23 22 21 46 46 H 1.09004 * 109.46983 * 299.99819 * 24 22 21 47 47 H 1.08998 * 109.47268 * 59.99990 * 24 22 21 48 48 H 1.08998 * 109.47074 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.1852 2.4446 -0.7784 5 6 2.7427 1.9441 1.2641 6 6 3.5551 1.6561 -0.0006 7 1 3.9426 2.5107 -0.5552 8 6 4.4308 0.4297 -0.0018 9 8 3.9283 -0.6742 -0.0037 10 7 5.7722 0.5594 -0.0005 11 6 6.6235 -0.6328 -0.0022 12 6 6.9165 -1.0390 -1.4235 13 1 6.5089 -0.4664 -2.2436 14 6 7.7039 -2.1420 -1.6769 15 7 7.9551 -2.4996 -2.9174 16 14 8.4083 -3.1326 -0.2585 17 1 9.7376 -2.5860 0.1149 18 1 7.4927 -3.0474 0.9075 19 1 8.5545 -4.5518 -0.6703 20 6 6.3791 1.8928 0.0015 21 6 6.5916 2.3586 -1.4403 22 6 7.2249 3.7514 -1.4383 23 6 7.5518 4.1651 -2.8745 24 6 6.2454 4.7561 -0.8284 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.4778 2.4332 -1.8284 31 1 0.1339 2.1704 -0.6912 32 1 1.3352 3.4442 -0.3704 33 1 2.8412 1.2465 2.0959 34 1 2.5955 2.9880 1.5409 35 1 6.1100 -1.4467 0.5098 36 1 7.5586 -0.4123 0.5128 37 1 8.5058 -3.2779 -3.0957 38 1 5.7192 2.5917 0.5156 39 1 7.3393 1.8543 0.5160 40 1 7.2515 1.6598 -1.9544 41 1 5.6314 2.3972 -1.9549 42 1 8.1411 3.7331 -0.8480 43 1 6.6356 4.1835 -3.4648 44 1 8.0033 5.1571 -2.8730 45 1 8.2496 3.4493 -3.3089 46 1 5.3292 4.7745 -1.4187 47 1 6.0125 4.4614 0.1948 48 1 6.6964 5.7484 -0.8274 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134275713.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:55 Heat of formation + Delta-G solvation = -35.580998 kcal Electronic energy + Delta-G solvation = -23646.390629 eV Core-core repulsion = 20508.439517 eV Total energy + Delta-G solvation = -3137.951112 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.89671 -37.51366 -36.45894 -34.42913 -32.55139 -31.90851 -29.28677 -28.25345 -27.51654 -27.04345 -24.19609 -23.55853 -22.98146 -21.51938 -19.74636 -19.02921 -17.93824 -16.87317 -16.53296 -15.49140 -14.92434 -14.66350 -14.52703 -14.02020 -13.95126 -13.77803 -13.58139 -13.17523 -13.03446 -12.74122 -12.59079 -12.17875 -12.10803 -12.00701 -11.78704 -11.69178 -11.56620 -11.47054 -11.20354 -10.97818 -10.92733 -10.70064 -10.67531 -10.50743 -10.32291 -10.14830 -10.08744 -9.79638 -9.47995 -9.41221 -8.70081 -8.55673 -7.62738 -6.05313 -4.02965 3.16704 3.28336 3.36742 3.41230 3.84444 4.07719 4.42480 4.78532 4.85445 5.01553 5.06587 5.14088 5.16550 5.19165 5.26610 5.41382 5.49755 5.55136 5.67498 5.70014 5.73088 5.78127 5.80103 5.84737 5.88277 5.89694 5.92484 5.98621 6.06736 6.08445 6.15713 6.22288 6.26547 6.27488 6.40004 6.42974 6.58782 6.62258 6.71538 6.86779 6.89763 7.02646 7.43967 7.65588 8.34349 8.51585 8.98266 9.08775 9.55774 11.07945 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.010951 B = 0.006844 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.304932 B = 4090.393788 C = 5927.519752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.076 4.076 3 C -0.092 4.092 4 C -0.121 4.121 5 C -0.153 4.153 6 C -0.181 4.181 7 H 0.118 0.882 8 C 0.538 3.462 9 O -0.536 6.536 10 N -0.591 5.591 11 C 0.216 3.784 12 C -0.522 4.522 13 H 0.076 0.924 14 C 0.071 3.929 15 N -0.898 5.898 16 Si 0.872 3.128 17 H -0.276 1.276 18 H -0.265 1.265 19 H -0.285 1.285 20 C 0.117 3.883 21 C -0.135 4.135 22 C -0.095 4.095 23 C -0.145 4.145 24 C -0.148 4.148 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.039 0.961 36 H 0.023 0.977 37 H 0.263 0.737 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.058 0.942 42 H 0.068 0.932 43 H 0.052 0.948 44 H 0.048 0.952 45 H 0.057 0.943 46 H 0.052 0.948 47 H 0.055 0.945 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.085 14.707 6.437 17.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.113 4.113 3 C -0.093 4.093 4 C -0.178 4.178 5 C -0.190 4.190 6 C -0.202 4.202 7 H 0.136 0.864 8 C 0.325 3.675 9 O -0.413 6.413 10 N -0.321 5.321 11 C 0.095 3.905 12 C -0.561 4.561 13 H 0.095 0.905 14 C -0.130 4.130 15 N -0.537 5.537 16 Si 0.699 3.301 17 H -0.202 1.202 18 H -0.189 1.189 19 H -0.210 1.210 20 C -0.007 4.007 21 C -0.173 4.173 22 C -0.114 4.114 23 C -0.203 4.203 24 C -0.206 4.206 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.057 0.943 36 H 0.041 0.959 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.077 0.923 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.074 0.926 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.228 13.953 6.338 17.394 hybrid contribution 0.763 -0.463 0.455 1.001 sum -7.465 13.490 6.793 16.848 Atomic orbital electron populations 1.21934 0.97012 1.01070 1.01019 1.21074 0.93468 0.92552 1.04253 1.21540 0.91180 0.97419 0.99135 1.21490 0.99732 0.96878 0.99667 1.23160 1.02791 1.01779 0.91307 1.22495 0.93752 0.99764 1.04209 0.86444 1.19408 0.82281 0.89058 0.76774 1.90653 1.73201 1.27400 1.50067 1.47867 1.05361 1.07350 1.71551 1.19658 0.88983 0.83471 0.98360 1.21347 1.30842 1.12589 0.91283 0.90546 1.24852 0.95984 0.96791 0.95419 1.69897 1.38706 1.26575 1.18538 0.86900 0.79683 0.80041 0.83440 1.20210 1.18917 1.21035 1.21512 0.98385 0.83968 0.96812 1.22147 1.01787 0.95718 0.97666 1.21084 0.98651 0.95007 0.96667 1.21810 1.01488 1.00614 0.96358 1.21912 0.99345 0.98548 1.00752 0.93290 0.92772 0.93078 0.90447 0.91020 0.92160 0.91164 0.92740 0.88638 0.88502 0.94264 0.95927 0.92677 0.91436 0.91100 0.89447 0.92337 0.91309 0.92926 0.93287 0.92363 0.92910 0.92595 0.93215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 8.92 37.16 0.33 -1.53 16 2 C -0.08 -1.19 4.36 -26.73 -0.12 -1.30 16 3 C -0.09 -1.28 2.47 -154.47 -0.38 -1.66 16 4 C -0.12 -1.34 9.49 37.16 0.35 -0.98 16 5 C -0.15 -1.96 9.53 -26.66 -0.25 -2.21 16 6 C -0.18 -2.80 4.51 -91.75 -0.41 -3.21 16 7 H 0.12 1.65 6.48 -51.93 -0.34 1.31 16 8 C 0.54 11.05 7.44 -10.99 -0.08 10.97 16 9 O -0.54 -12.93 12.68 5.56 0.07 -12.86 16 10 N -0.59 -12.22 2.46 -175.06 -0.43 -12.65 16 11 C 0.22 5.30 4.27 -5.20 -0.02 5.28 16 12 C -0.52 -14.87 9.47 -34.44 -0.33 -15.20 16 13 H 0.08 2.38 7.66 -52.49 -0.40 1.98 16 14 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 15 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 16 Si 0.87 21.70 27.47 -169.99 -4.67 17.03 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 18 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 19 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 20 C 0.12 1.88 4.84 -4.04 -0.02 1.86 16 21 C -0.13 -2.14 4.89 -26.73 -0.13 -2.27 16 22 C -0.09 -1.18 2.92 -90.62 -0.26 -1.45 16 23 C -0.15 -1.76 9.19 37.16 0.34 -1.42 16 24 C -0.15 -1.53 8.95 37.16 0.33 -1.20 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.60 6.45 -51.93 -0.33 0.26 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 1.44 7.25 -51.93 -0.38 1.06 16 29 H 0.07 1.24 7.02 -51.93 -0.36 0.88 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.70 5.58 -51.93 -0.29 0.41 16 32 H 0.05 0.52 7.90 -51.93 -0.41 0.10 16 33 H 0.10 1.30 8.05 -51.93 -0.42 0.88 16 34 H 0.10 0.98 8.05 -51.93 -0.42 0.57 16 35 H 0.04 1.04 6.48 -51.93 -0.34 0.71 16 36 H 0.02 0.53 7.32 -51.93 -0.38 0.15 16 37 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 38 H 0.07 0.91 5.06 -51.92 -0.26 0.64 16 39 H 0.07 1.10 7.89 -51.93 -0.41 0.69 16 40 H 0.09 1.72 7.26 -51.93 -0.38 1.35 16 41 H 0.06 0.96 7.45 -51.93 -0.39 0.57 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.06 0.55 6.56 -51.93 -0.34 0.21 16 48 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 368.12 15.07 5.55 5.55 Total: -1.00 -32.12 368.12 -8.28 -40.40 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -8.82 Total: 1.83 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -0.75 Total: -12.35 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.34 Total: -39.60 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.07 Total: -12.86 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.12 -8.28 -40.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134275713.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.816 kcal (2) G-P(sol) polarization free energy of solvation -32.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds