Wall clock time and date at job start Tue Mar 31 2020 05:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47399 * 2 1 4 4 C 1.53002 * 115.54833 * 325.67456 * 3 2 1 5 5 C 1.53082 * 117.51446 * 111.39291 * 3 2 1 6 6 C 1.53002 * 117.50173 * 180.02562 * 3 2 1 7 7 H 1.08996 * 117.49917 * 145.00080 * 6 3 2 8 8 C 1.50698 * 117.49974 * 0.02562 * 6 3 2 9 9 O 1.21280 * 119.99955 * 0.08402 * 8 6 3 10 10 N 1.34771 * 120.00324 * 180.09096 * 8 6 3 11 11 C 1.46495 * 120.00330 * 180.02562 * 10 8 6 12 12 C 1.50702 * 109.47571 * 89.99769 * 11 10 8 13 13 H 1.08002 * 119.99446 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00072 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99826 * 179.72119 * 14 12 11 16 16 Si 1.86800 * 120.00406 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.46758 * 269.72576 * 16 14 12 18 18 H 1.48499 * 109.47026 * 29.72423 * 16 14 12 19 19 H 1.48496 * 109.47474 * 149.72459 * 16 14 12 20 20 C 1.46498 * 119.99856 * 359.97438 * 10 8 6 21 21 C 1.53000 * 109.47595 * 270.00430 * 20 10 8 22 22 C 1.53000 * 109.47467 * 179.97438 * 21 20 10 23 23 C 1.53002 * 109.46978 * 174.99845 * 22 21 20 24 24 C 1.52995 * 109.47316 * 295.00320 * 22 21 20 25 25 H 1.09001 * 109.46924 * 299.99752 * 1 2 3 26 26 H 1.08997 * 109.47271 * 60.00010 * 1 2 3 27 27 H 1.09003 * 109.47119 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47634 * 240.00067 * 2 1 3 29 29 H 1.09006 * 109.47561 * 120.00504 * 2 1 3 30 30 H 1.09004 * 109.46501 * 274.32255 * 4 3 2 31 31 H 1.08997 * 109.47498 * 34.32308 * 4 3 2 32 32 H 1.09000 * 109.47301 * 154.33341 * 4 3 2 33 33 H 1.09002 * 117.51154 * 359.97438 * 5 3 2 34 34 H 1.08997 * 117.48794 * 214.96817 * 5 3 2 35 35 H 1.09000 * 109.47378 * 329.99429 * 11 10 8 36 36 H 1.09001 * 109.47153 * 209.99549 * 11 10 8 37 37 H 0.96999 * 120.00128 * 180.27192 * 15 14 12 38 38 H 1.09008 * 109.47270 * 30.00357 * 20 10 8 39 39 H 1.09000 * 109.47529 * 150.00386 * 20 10 8 40 40 H 1.08998 * 109.46668 * 300.00155 * 21 20 10 41 41 H 1.09007 * 109.47048 * 59.99634 * 21 20 10 42 42 H 1.09004 * 109.46946 * 55.00161 * 22 21 20 43 43 H 1.08997 * 109.47333 * 60.00615 * 23 22 21 44 44 H 1.08995 * 109.46861 * 180.02562 * 23 22 21 45 45 H 1.08999 * 109.46967 * 300.00087 * 23 22 21 46 46 H 1.09004 * 109.46983 * 299.99819 * 24 22 21 47 47 H 1.08998 * 109.47268 * 59.99990 * 24 22 21 48 48 H 1.08998 * 109.47074 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.1852 2.4446 -0.7784 5 6 2.7427 1.9441 1.2641 6 6 3.5551 1.6561 -0.0006 7 1 3.9426 2.5107 -0.5552 8 6 4.4308 0.4297 -0.0018 9 8 3.9283 -0.6742 -0.0037 10 7 5.7722 0.5594 -0.0005 11 6 6.6235 -0.6328 -0.0022 12 6 6.9165 -1.0390 -1.4235 13 1 6.5089 -0.4664 -2.2436 14 6 7.7039 -2.1420 -1.6769 15 7 7.9551 -2.4996 -2.9174 16 14 8.4083 -3.1326 -0.2585 17 1 9.7376 -2.5860 0.1149 18 1 7.4927 -3.0474 0.9075 19 1 8.5545 -4.5518 -0.6703 20 6 6.3791 1.8928 0.0015 21 6 6.5916 2.3586 -1.4403 22 6 7.2249 3.7514 -1.4383 23 6 7.5518 4.1651 -2.8745 24 6 6.2454 4.7561 -0.8284 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.4778 2.4332 -1.8284 31 1 0.1339 2.1704 -0.6912 32 1 1.3352 3.4442 -0.3704 33 1 2.8412 1.2465 2.0959 34 1 2.5955 2.9880 1.5409 35 1 6.1100 -1.4467 0.5098 36 1 7.5586 -0.4123 0.5128 37 1 8.5058 -3.2779 -3.0957 38 1 5.7192 2.5917 0.5156 39 1 7.3393 1.8543 0.5160 40 1 7.2515 1.6598 -1.9544 41 1 5.6314 2.3972 -1.9549 42 1 8.1411 3.7331 -0.8480 43 1 6.6356 4.1835 -3.4648 44 1 8.0033 5.1571 -2.8730 45 1 8.2496 3.4493 -3.3089 46 1 5.3292 4.7745 -1.4187 47 1 6.0125 4.4614 0.1948 48 1 6.6964 5.7484 -0.8274 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134275713.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:54 Heat of formation + Delta-G solvation = -53.860210 kcal Electronic energy + Delta-G solvation = -23647.183275 eV Core-core repulsion = 20508.439517 eV Total energy + Delta-G solvation = -3138.743758 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.32951 -38.80548 -37.77322 -36.00876 -34.64682 -33.10761 -30.97260 -29.46595 -28.91172 -27.92382 -25.78925 -24.64563 -24.41772 -23.17008 -20.84354 -20.33377 -19.31844 -19.03950 -18.04210 -17.05982 -16.44671 -15.96408 -15.84414 -15.44078 -15.31539 -15.04361 -14.75828 -14.57541 -14.42460 -14.01245 -13.96729 -13.75013 -13.48979 -13.28117 -13.04173 -12.99491 -12.72781 -12.64082 -12.51781 -12.45352 -12.14536 -12.08621 -12.02573 -11.78485 -11.75942 -11.66667 -11.41991 -11.34663 -10.95035 -10.81957 -10.65264 -10.25557 -9.35859 -8.33620 -6.37075 1.28232 1.32957 1.43473 1.68997 2.29377 2.32298 2.86548 2.99867 3.58524 3.71677 3.91390 3.97197 4.02101 4.13234 4.16769 4.23700 4.32145 4.49192 4.59498 4.62468 4.67236 4.73085 4.74229 4.82447 4.84513 4.87442 4.91954 4.94327 4.97621 4.99278 5.09634 5.13526 5.16523 5.17981 5.26929 5.28473 5.31762 5.40038 5.44935 5.46439 5.55685 5.58367 5.67190 5.73539 6.26027 6.63858 6.75272 7.22921 7.48751 8.83270 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.010951 B = 0.006844 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.304932 B = 4090.393788 C = 5927.519752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.076 4.076 3 C -0.098 4.098 4 C -0.116 4.116 5 C -0.122 4.122 6 C -0.196 4.196 7 H 0.137 0.863 8 C 0.524 3.476 9 O -0.585 6.585 10 N -0.599 5.599 11 C 0.225 3.775 12 C -0.524 4.524 13 H 0.030 0.970 14 C 0.010 3.990 15 N -0.946 5.946 16 Si 0.945 3.055 17 H -0.252 1.252 18 H -0.258 1.258 19 H -0.282 1.282 20 C 0.114 3.886 21 C -0.125 4.125 22 C -0.089 4.089 23 C -0.146 4.146 24 C -0.143 4.143 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.047 0.953 28 H 0.032 0.968 29 H 0.044 0.956 30 H 0.051 0.949 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.141 0.859 35 H 0.017 0.983 36 H 0.043 0.957 37 H 0.267 0.733 38 H 0.107 0.893 39 H 0.080 0.920 40 H 0.035 0.965 41 H 0.047 0.953 42 H 0.074 0.926 43 H 0.050 0.950 44 H 0.073 0.927 45 H 0.035 0.965 46 H 0.054 0.946 47 H 0.067 0.933 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.874 17.872 8.957 21.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.098 4.098 4 C -0.172 4.172 5 C -0.159 4.159 6 C -0.217 4.217 7 H 0.155 0.845 8 C 0.314 3.686 9 O -0.466 6.466 10 N -0.329 5.329 11 C 0.102 3.898 12 C -0.563 4.563 13 H 0.049 0.951 14 C -0.188 4.188 15 N -0.587 5.587 16 Si 0.768 3.232 17 H -0.176 1.176 18 H -0.182 1.182 19 H -0.208 1.208 20 C -0.008 4.008 21 C -0.164 4.164 22 C -0.109 4.109 23 C -0.203 4.203 24 C -0.200 4.200 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.066 0.934 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.159 0.841 35 H 0.035 0.965 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.125 0.875 39 H 0.098 0.902 40 H 0.054 0.946 41 H 0.066 0.934 42 H 0.093 0.907 43 H 0.069 0.931 44 H 0.092 0.908 45 H 0.054 0.946 46 H 0.073 0.927 47 H 0.085 0.915 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.011 17.172 8.862 21.322 hybrid contribution 0.975 -1.463 -0.429 1.810 sum -8.036 15.710 8.434 19.557 Atomic orbital electron populations 1.21868 0.94050 1.01530 1.02706 1.20940 0.96023 0.93559 1.00797 1.21716 0.90285 0.97028 1.00801 1.21510 0.99706 0.97228 0.98776 1.23304 0.99188 1.03826 0.89617 1.22420 0.93871 0.97832 1.07580 0.84495 1.20425 0.82516 0.90327 0.75320 1.90630 1.74075 1.29832 1.52086 1.47988 1.05556 1.07938 1.71398 1.19304 0.90129 0.84918 0.95409 1.21525 1.30268 1.12218 0.92271 0.95145 1.25824 0.96496 0.98053 0.98417 1.70055 1.40011 1.27509 1.21103 0.85756 0.79781 0.78091 0.79612 1.17614 1.18208 1.20800 1.21814 0.99523 0.82285 0.97154 1.22002 1.00310 0.97028 0.97029 1.21056 0.99384 0.93238 0.97175 1.21819 1.01052 1.01294 0.96155 1.21875 0.98679 0.98468 1.01021 0.91178 0.91293 0.93408 0.94921 0.93708 0.92970 0.89801 0.89980 0.89701 0.84135 0.96505 0.93885 0.92433 0.87540 0.90179 0.94576 0.93379 0.90718 0.93133 0.90838 0.94613 0.92666 0.91455 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 8.92 71.98 0.64 -2.70 16 2 C -0.08 -2.41 4.36 30.59 0.13 -2.28 16 3 C -0.10 -2.55 2.47 -52.15 -0.13 -2.67 16 4 C -0.12 -2.15 9.49 71.98 0.68 -1.47 16 5 C -0.12 -2.70 9.53 30.64 0.29 -2.41 16 6 C -0.20 -5.78 4.51 -11.52 -0.05 -5.83 16 7 H 0.14 3.47 6.48 -2.39 -0.02 3.46 16 8 C 0.52 22.16 7.44 87.66 0.65 22.81 16 9 O -0.59 -30.04 12.68 -3.03 -0.04 -30.08 16 10 N -0.60 -25.30 2.46 -826.17 -2.03 -27.33 16 11 C 0.22 11.37 4.27 85.63 0.37 11.74 16 12 C -0.52 -31.58 9.47 25.60 0.24 -31.33 16 13 H 0.03 2.05 7.66 -2.91 -0.02 2.03 16 14 C 0.01 0.58 5.47 84.65 0.46 1.04 16 15 N -0.95 -61.15 13.96 21.45 0.30 -60.85 16 16 Si 0.94 45.77 27.47 68.60 1.88 47.65 16 17 H -0.25 -11.18 7.11 99.48 0.71 -10.48 16 18 H -0.26 -12.13 6.54 99.48 0.65 -11.48 16 19 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 20 C 0.11 3.56 4.84 86.38 0.42 3.98 16 21 C -0.12 -4.04 4.89 30.59 0.15 -3.89 16 22 C -0.09 -2.09 2.92 -10.79 -0.03 -2.12 16 23 C -0.15 -3.44 9.19 71.98 0.66 -2.77 16 24 C -0.14 -2.41 8.95 71.98 0.64 -1.77 16 25 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.07 1.39 6.45 -2.39 -0.02 1.37 16 27 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.03 1.30 7.25 -2.39 -0.02 1.29 16 29 H 0.04 1.63 7.02 -2.38 -0.02 1.61 16 30 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.08 1.35 5.58 -2.39 -0.01 1.33 16 32 H 0.08 1.11 7.90 -2.39 -0.02 1.09 16 33 H 0.08 2.11 8.05 -2.39 -0.02 2.09 16 34 H 0.14 1.96 8.05 -2.39 -0.02 1.94 16 35 H 0.02 0.93 6.48 -2.39 -0.02 0.91 16 36 H 0.04 1.99 7.32 -2.39 -0.02 1.98 16 37 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 38 H 0.11 2.51 5.06 -2.38 -0.01 2.50 16 39 H 0.08 2.35 7.89 -2.39 -0.02 2.33 16 40 H 0.04 1.52 7.26 -2.39 -0.02 1.50 16 41 H 0.05 1.62 7.45 -2.38 -0.02 1.60 16 42 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.07 0.99 6.56 -2.39 -0.02 0.97 16 48 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -77.47 368.12 6.10 -71.37 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 0.85 Total: 18.92 kcal Atomic # 6 Polarization: -24.82 SS G_CDS: 5.14 Total: -19.69 kcal Atomic # 7 Polarization: -86.45 SS G_CDS: -1.73 Total: -88.18 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -0.04 Total: -30.08 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.88 Total: 47.65 kcal Total: -77.47 6.10 -71.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134275713.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.511 kcal (2) G-P(sol) polarization free energy of solvation -77.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds