Wall clock time and date at job start Tue Mar 31 2020 05:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47293 * 269.99846 * 3 2 1 5 5 H 1.48504 * 109.47104 * 30.00092 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99839 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46947 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.47195 * 179.97438 * 11 10 9 13 13 C 1.46853 * 111.00213 * 294.21284 * 12 11 10 14 14 C 1.53035 * 109.52396 * 174.15521 * 13 12 11 15 15 C 1.53117 * 109.27632 * 59.18377 * 14 13 12 16 16 O 1.42900 * 109.52544 * 182.43771 * 15 14 13 17 17 C 1.42895 * 113.99875 * 269.68462 * 16 15 14 18 18 C 1.54271 * 110.02921 * 267.90124 * 17 16 15 19 19 C 1.54968 * 104.15898 * 217.13565 * 18 17 16 20 20 C 1.54892 * 102.77598 * 37.89117 * 19 18 17 21 21 C 1.53874 * 110.03321 * 150.69027 * 17 16 15 22 22 C 1.53125 * 109.16116 * 302.34057 * 15 14 13 23 23 C 1.46847 * 111.00341 * 170.00311 * 12 11 10 24 24 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 26 26 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 27 27 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 28 28 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 29 29 H 1.08992 * 109.47554 * 299.99696 * 11 10 9 30 30 H 1.08996 * 109.47261 * 60.00229 * 11 10 9 31 31 H 1.08998 * 109.46032 * 294.17586 * 13 12 11 32 32 H 1.09003 * 109.46203 * 54.13824 * 13 12 11 33 33 H 1.08996 * 109.50754 * 299.23879 * 14 13 12 34 34 H 1.09001 * 109.49828 * 179.11537 * 14 13 12 35 35 H 1.08996 * 109.57771 * 62.27536 * 15 14 13 36 36 H 1.08998 * 110.02276 * 29.29325 * 17 16 15 37 37 H 1.09000 * 110.48822 * 335.78587 * 18 17 16 38 38 H 1.09002 * 110.48556 * 98.42909 * 18 17 16 39 39 H 1.08999 * 110.72219 * 279.57645 * 19 18 17 40 40 H 1.09001 * 110.92054 * 156.29807 * 19 18 17 41 41 H 1.08998 * 110.48213 * 203.40292 * 20 19 18 42 42 H 1.08999 * 110.59777 * 80.81667 * 20 19 18 43 43 H 1.09008 * 110.03124 * 238.56635 * 21 17 16 44 44 H 1.08997 * 110.03470 * 359.94426 * 21 17 16 45 45 H 1.08997 * 109.50198 * 297.71886 * 22 15 14 46 46 H 1.08997 * 109.50203 * 177.59887 * 22 15 14 47 47 H 1.09006 * 109.45913 * 305.85395 * 23 12 11 48 48 H 1.08990 * 109.46141 * 65.83518 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4802 -4.9870 -0.0020 12 7 2.4347 -6.1036 -0.0024 13 6 3.2042 -6.1379 -1.2527 14 6 4.2841 -7.2182 -1.1593 15 6 3.6209 -8.5755 -0.9090 16 8 4.6275 -9.5794 -0.7643 17 6 4.9971 -10.2129 -1.9907 18 6 4.1414 -11.4775 -2.2109 19 6 5.1212 -12.4908 -2.8549 20 6 6.4465 -12.2105 -2.1037 21 6 6.4621 -10.6786 -1.9229 22 6 2.7870 -8.4986 0.3729 23 6 1.7505 -7.3811 0.2351 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5575 0.8880 26 1 0.6246 -2.5563 -0.8919 27 1 2.8725 -3.6039 -0.8910 28 1 2.8713 -3.6047 0.8890 29 1 0.8532 -5.0450 0.8876 30 1 0.8540 -5.0446 -0.8922 31 1 2.5362 -6.3629 -2.0841 32 1 3.6739 -5.1680 -1.4168 33 1 4.9605 -6.9865 -0.3367 34 1 4.8447 -7.2539 -2.0934 35 1 2.9742 -8.8266 -1.7497 36 1 4.8631 -9.5218 -2.8229 37 1 3.7705 -11.8577 -1.2591 38 1 3.3129 -11.2646 -2.8866 39 1 5.2328 -12.2950 -3.9213 40 1 4.7897 -13.5150 -2.6843 41 1 7.2991 -12.5328 -2.7013 42 1 6.4508 -12.7091 -1.1345 43 1 7.0389 -10.2140 -2.7227 44 1 6.8915 -10.4205 -0.9549 45 1 3.4399 -8.2869 1.2197 46 1 2.2782 -9.4491 0.5336 47 1 1.1645 -7.3142 1.1518 48 1 1.0896 -7.6004 -0.6033 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171036950.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:32 Heat of formation + Delta-G solvation = -79.341410 kcal Electronic energy + Delta-G solvation = -22253.541377 eV Core-core repulsion = 19113.692672 eV Total energy + Delta-G solvation = -3139.848706 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.75849 -38.39874 -36.19744 -34.09763 -32.45663 -30.90083 -30.41275 -29.03478 -27.88895 -26.31857 -23.85412 -23.16747 -21.90104 -21.03146 -20.55175 -19.85262 -19.72167 -17.33949 -16.38077 -16.09603 -15.55209 -15.26773 -14.99875 -14.45171 -14.34750 -14.01444 -13.90821 -13.65678 -13.60932 -13.11376 -12.51911 -12.29919 -12.22996 -11.97738 -11.70131 -11.46840 -11.44186 -11.41547 -11.18369 -11.09086 -10.98418 -10.85618 -10.78522 -10.74528 -10.56552 -10.44985 -10.34026 -9.63276 -9.41139 -9.29662 -9.02525 -8.31791 -8.04512 -5.97218 -3.99063 3.33817 3.39871 3.43919 3.47793 4.12492 4.26094 4.28060 4.49173 4.60337 4.74852 4.80640 4.95629 5.05578 5.13224 5.18376 5.22269 5.28408 5.32890 5.36711 5.38580 5.45585 5.54638 5.55932 5.59009 5.67109 5.71327 5.76423 5.84676 5.87236 5.88784 5.90857 5.98706 6.05229 6.11775 6.16345 6.30828 6.34884 6.73854 6.80833 7.15317 7.20967 7.39702 7.42733 7.71537 7.86604 8.03515 8.46998 9.08177 9.64766 11.14242 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.038748 B = 0.002508 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.451880 B =11162.189630 C =11589.578288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.105 4.105 11 C 0.057 3.943 12 N -0.539 5.539 13 C 0.055 3.945 14 C -0.136 4.136 15 C 0.091 3.909 16 O -0.373 6.373 17 C 0.084 3.916 18 C -0.148 4.148 19 C -0.124 4.124 20 C -0.123 4.123 21 C -0.124 4.124 22 C -0.110 4.110 23 C 0.057 3.943 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.013 0.987 27 H 0.046 0.954 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.068 0.932 47 H 0.079 0.921 48 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.959 -25.153 -4.999 27.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.143 4.143 11 C -0.070 4.070 12 N -0.264 5.264 13 C -0.073 4.073 14 C -0.174 4.174 15 C 0.033 3.967 16 O -0.293 6.293 17 C 0.026 3.974 18 C -0.186 4.186 19 C -0.161 4.161 20 C -0.161 4.161 21 C -0.162 4.162 22 C -0.148 4.148 23 C -0.071 4.071 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.031 0.969 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.097 0.903 45 H 0.098 0.902 46 H 0.086 0.914 47 H 0.098 0.902 48 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 9.214 -25.003 -4.431 27.012 hybrid contribution -0.347 0.947 -0.995 1.417 sum 8.867 -24.056 -5.426 26.206 Atomic orbital electron populations 1.69973 1.06047 1.26509 1.51116 1.25034 0.94859 0.99259 0.95440 0.86597 0.79886 0.83495 0.78045 1.20730 1.21250 1.19852 1.21255 0.93048 0.91047 1.50202 0.92687 1.19078 0.94049 0.91430 0.97063 1.21660 0.99138 0.92702 1.00776 1.22280 0.93626 0.90910 1.00215 1.62007 1.26855 1.02930 1.34572 1.22078 0.95246 0.99717 0.90242 1.22094 0.98692 0.94214 1.02372 1.22198 0.88949 0.87528 0.98036 1.87982 1.57913 1.52941 1.30418 1.22789 0.94287 0.93286 0.87040 1.22932 0.98161 0.95989 1.01482 1.22444 0.95243 0.98986 0.99474 1.22330 0.97547 0.95609 1.00566 1.22227 0.95093 0.95791 1.03050 1.21634 0.97446 0.98008 0.97733 1.22035 0.94933 0.89269 1.00856 0.93073 0.96595 0.96879 0.93501 0.92547 0.91130 0.95407 0.95378 0.89493 0.90159 0.91901 0.92814 0.92058 0.90461 0.91715 0.91492 0.91418 0.91581 0.91391 0.91154 0.90279 0.90182 0.91365 0.90244 0.95300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.10 -2.22 5.08 -26.73 -0.14 -2.35 16 11 C 0.06 1.00 4.96 -3.83 -0.02 0.98 16 12 N -0.54 -8.26 4.66 -234.67 -1.09 -9.36 16 13 C 0.06 0.78 5.29 -3.83 -0.02 0.76 16 14 C -0.14 -1.66 5.72 -26.65 -0.15 -1.81 16 15 C 0.09 1.03 2.51 -26.61 -0.07 0.97 16 16 O -0.37 -4.31 9.55 -35.23 -0.34 -4.65 16 17 C 0.08 0.78 3.17 -25.61 -0.08 0.70 16 18 C -0.15 -1.20 6.56 -25.03 -0.16 -1.36 16 19 C -0.12 -0.83 6.91 -24.69 -0.17 -1.00 16 20 C -0.12 -0.84 6.83 -25.07 -0.17 -1.01 16 21 C -0.12 -1.01 6.61 -25.62 -0.17 -1.18 16 22 C -0.11 -1.27 5.75 -26.65 -0.15 -1.43 16 23 C 0.06 0.73 5.46 -3.83 -0.02 0.71 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.97 6.43 -51.93 -0.33 0.64 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.07 1.24 7.99 -51.93 -0.41 0.82 16 30 H 0.03 0.50 8.12 -51.93 -0.42 0.07 16 31 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 1.32 6.21 -51.93 -0.32 1.00 16 33 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 35 H 0.05 0.59 7.80 -51.93 -0.41 0.18 16 36 H 0.06 0.56 7.75 -51.93 -0.40 0.15 16 37 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.51 8.14 -51.92 -0.42 0.08 16 44 H 0.08 0.71 7.95 -51.93 -0.41 0.30 16 45 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 46 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 47 H 0.08 0.98 8.02 -51.93 -0.42 0.56 16 48 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 369.21 15.07 5.56 5.56 Total: -1.00 -30.31 369.21 -11.45 -41.76 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -9.43 Total: -4.39 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: -1.87 Total: -19.31 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: -0.36 Total: -35.92 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: -0.34 Total: -4.65 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.31 -11.45 -41.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171036950.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.579 kcal (2) G-P(sol) polarization free energy of solvation -30.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds