Wall clock time and date at job start Tue Mar 31 2020 05:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48502 * 109.46883 * 240.00133 * 3 2 1 5 5 H 1.48497 * 109.46856 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47081 * 119.99628 * 3 2 1 7 7 C 1.37881 * 120.00221 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00218 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99828 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47339 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47165 * 179.97438 * 10 9 7 12 12 N 1.46501 * 109.46932 * 180.02562 * 11 10 9 13 13 C 1.34782 * 120.00270 * 180.02562 * 12 11 10 14 14 O 1.21280 * 119.99222 * 359.97438 * 13 12 11 15 15 C 1.50696 * 120.00377 * 180.02562 * 13 12 11 16 16 C 1.52989 * 109.47165 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.47290 * 179.97438 * 16 15 13 18 18 C 1.53002 * 109.47469 * 179.97438 * 17 16 15 19 19 C 1.52997 * 109.46817 * 64.99892 * 18 17 16 20 20 C 1.52999 * 109.47317 * 179.97438 * 19 18 17 21 21 C 1.53005 * 109.47159 * 300.00546 * 20 19 18 22 22 C 1.52997 * 109.47452 * 59.99536 * 21 20 19 23 23 C 1.53000 * 109.47233 * 184.99697 * 18 17 16 24 24 H 0.96995 * 119.99872 * 0.02562 * 1 2 3 25 25 H 1.09008 * 109.47134 * 59.99796 * 9 7 2 26 26 H 1.09006 * 109.47449 * 300.00054 * 9 7 2 27 27 H 1.08999 * 109.46883 * 59.99808 * 10 9 7 28 28 H 1.09007 * 109.47199 * 299.99937 * 10 9 7 29 29 H 1.08999 * 109.47369 * 60.00116 * 11 10 9 30 30 H 1.08997 * 109.46991 * 299.99454 * 11 10 9 31 31 H 0.97004 * 120.00412 * 359.97438 * 12 11 10 32 32 H 1.08999 * 109.46957 * 59.99820 * 15 13 12 33 33 H 1.09006 * 109.46969 * 300.00343 * 15 13 12 34 34 H 1.08997 * 109.47705 * 59.99491 * 16 15 13 35 35 H 1.09006 * 109.47323 * 299.99962 * 16 15 13 36 36 H 1.09008 * 109.47149 * 59.99652 * 17 16 15 37 37 H 1.08997 * 109.47163 * 299.99722 * 17 16 15 38 38 H 1.09002 * 109.47070 * 305.00072 * 18 17 16 39 39 H 1.08996 * 109.47853 * 300.00202 * 19 18 17 40 40 H 1.09002 * 109.47153 * 60.00231 * 19 18 17 41 41 H 1.09000 * 109.47486 * 180.02562 * 20 19 18 42 42 H 1.09002 * 109.46716 * 60.00091 * 20 19 18 43 43 H 1.09002 * 109.46935 * 299.99411 * 21 20 19 44 44 H 1.09001 * 109.46812 * 179.97438 * 21 20 19 45 45 H 1.08993 * 109.47194 * 179.97438 * 22 21 20 46 46 H 1.09002 * 109.46695 * 59.99734 * 22 21 20 47 47 H 1.08992 * 109.47399 * 300.00166 * 23 18 17 48 48 H 1.09004 * 109.46724 * 60.00652 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 7 2.4323 -6.1006 0.0018 13 6 1.9831 -7.3714 0.0019 14 8 0.7907 -7.5929 0.0020 15 6 2.9623 -8.5168 0.0031 16 6 2.1974 -9.8417 0.0024 17 6 3.1916 -11.0047 0.0029 18 6 2.4266 -12.3297 0.0028 19 6 1.6442 -12.4667 -1.3048 20 6 0.8797 -13.7920 -1.3053 21 6 1.8696 -14.9519 -1.1793 22 6 2.6520 -14.8149 0.1284 23 6 3.4160 -13.4899 0.1291 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6240 -2.5568 0.8903 27 1 2.8719 -3.6043 0.8905 28 1 2.8720 -3.6044 -0.8895 29 1 0.8533 -5.0451 -0.8886 30 1 0.8540 -5.0446 0.8914 31 1 3.3860 -5.9234 0.0014 32 1 3.5883 -8.4587 0.8936 33 1 3.5898 -8.4593 -0.8864 34 1 1.5716 -9.8996 -0.8882 35 1 1.5696 -9.8994 0.8917 36 1 3.8176 -10.9470 0.8934 37 1 3.8188 -10.9468 -0.8865 38 1 1.7341 -12.3495 0.8444 39 1 0.9393 -11.6403 -1.3949 40 1 2.3367 -12.4469 -2.1464 41 1 0.3227 -13.8898 -2.2371 42 1 0.1872 -13.8123 -0.4638 43 1 2.5621 -14.9316 -2.0208 44 1 1.3249 -15.8960 -1.1792 45 1 3.3568 -15.6414 0.2184 46 1 1.9594 -14.8351 0.9699 47 1 4.1085 -13.4701 -0.7124 48 1 3.9734 -13.3922 1.0607 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171509927.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:43 Heat of formation + Delta-G solvation = -107.206925 kcal Electronic energy + Delta-G solvation = -21193.245917 eV Core-core repulsion = 18052.188872 eV Total energy + Delta-G solvation = -3141.057045 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.63457 -38.99765 -35.55883 -34.78212 -33.29599 -31.64941 -31.09370 -30.82359 -27.48146 -26.09717 -23.57695 -22.94298 -22.18353 -20.79957 -20.66825 -20.05845 -19.68256 -16.78497 -16.38630 -16.02122 -15.80344 -15.28027 -15.02703 -14.53505 -14.44737 -14.38217 -14.25653 -13.66436 -13.37667 -13.17008 -12.67645 -12.45149 -12.28051 -12.07134 -11.86846 -11.64939 -11.61765 -11.48205 -11.39518 -11.19325 -10.88453 -10.80651 -10.72579 -10.70211 -10.62532 -10.31044 -10.16433 -9.86141 -9.81689 -9.33554 -9.11869 -8.73930 -8.37177 -6.01798 -4.05094 2.84534 3.31821 3.36510 3.37994 3.45905 4.32891 4.39070 4.44151 4.45429 4.74770 4.79011 4.82352 4.98068 5.01737 5.15354 5.20440 5.23423 5.24770 5.33723 5.36200 5.39937 5.49555 5.55816 5.64121 5.68041 5.72068 5.77631 5.78794 5.83617 5.86054 5.93287 5.98018 6.02230 6.11286 6.17232 6.23216 6.28238 6.52354 6.60510 6.84954 7.01141 7.63115 7.75912 7.76021 7.96775 8.37433 8.45917 9.01350 9.58970 11.09419 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.060574 B = 0.001902 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.132182 B =14715.633737 C =14993.459678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.121 4.121 11 C 0.116 3.884 12 N -0.729 5.729 13 C 0.504 3.496 14 O -0.547 6.547 15 C -0.141 4.141 16 C -0.105 4.105 17 C -0.115 4.115 18 C -0.087 4.087 19 C -0.118 4.118 20 C -0.121 4.121 21 C -0.120 4.120 22 C -0.120 4.120 23 C -0.114 4.114 24 H 0.262 0.738 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.398 0.602 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.060 0.940 47 H 0.060 0.940 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.265 -28.879 -0.856 30.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.007 4.007 12 N -0.380 5.380 13 C 0.290 3.710 14 O -0.425 6.425 15 C -0.181 4.181 16 C -0.143 4.143 17 C -0.153 4.153 18 C -0.105 4.105 19 C -0.155 4.155 20 C -0.158 4.158 21 C -0.157 4.157 22 C -0.158 4.158 23 C -0.152 4.152 24 H 0.071 0.929 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.231 0.769 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.079 0.921 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.231 -28.901 -0.856 29.804 hybrid contribution 0.933 1.155 0.001 1.485 sum 8.164 -27.746 -0.855 28.935 Atomic orbital electron populations 1.69954 1.06057 1.26800 1.50434 1.25035 0.94869 0.99304 0.95268 0.86633 0.79551 0.83076 0.78572 1.20257 1.21260 1.20251 1.21169 0.92952 0.90966 1.51098 0.92700 1.19032 0.93869 0.90876 0.97647 1.21884 0.99742 0.93418 1.00812 1.21625 0.91954 0.85265 1.01873 1.46267 1.10717 1.06115 1.74876 1.20734 0.89845 0.84198 0.76178 1.90692 1.17118 1.84906 1.49739 1.21699 0.98479 0.93860 1.04091 1.21384 0.97678 0.91494 1.03710 1.21663 0.97930 0.93743 1.01941 1.21159 0.97059 0.93992 0.98309 1.21652 0.99147 0.97353 0.97341 1.21545 0.97836 0.94769 1.01698 1.21540 0.98214 0.98166 0.97807 1.21523 0.99030 0.97327 0.97874 1.21579 0.97734 0.94201 1.01665 0.92867 0.96293 0.96280 0.92771 0.92765 0.91890 0.91895 0.76867 0.89183 0.89185 0.90981 0.91293 0.91970 0.91971 0.91161 0.91384 0.92126 0.92172 0.92053 0.92155 0.92357 0.92291 0.92090 0.92087 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.91 13.29 55.43 0.74 -26.18 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.69 9.11 -34.44 -0.31 -15.01 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 10 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 11 C 0.12 2.07 5.67 -4.04 -0.02 2.05 16 12 N -0.73 -10.41 5.56 -60.29 -0.33 -10.75 16 13 C 0.50 7.32 7.83 -10.98 -0.09 7.23 16 14 O -0.55 -10.27 15.98 5.56 0.09 -10.18 16 15 C -0.14 -1.37 5.70 -27.89 -0.16 -1.52 16 16 C -0.10 -1.02 4.26 -26.74 -0.11 -1.13 16 17 C -0.12 -0.85 4.68 -26.73 -0.13 -0.98 16 18 C -0.09 -0.64 2.19 -90.62 -0.20 -0.84 16 19 C -0.12 -0.90 4.96 -26.73 -0.13 -1.03 16 20 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 21 C -0.12 -0.76 5.92 -26.73 -0.16 -0.92 16 22 C -0.12 -0.75 5.92 -26.76 -0.16 -0.91 16 23 C -0.11 -0.74 5.20 -26.76 -0.14 -0.88 16 24 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.02 0.51 8.14 -51.92 -0.42 0.09 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.40 4.48 8.47 -40.82 -0.35 4.14 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.79 6.52 -51.93 -0.34 0.45 16 35 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 36 H 0.06 0.43 8.14 -51.92 -0.42 0.00 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.59 6.57 -51.93 -0.34 0.25 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 377.30 15.07 5.69 5.69 Total: -1.00 -31.93 377.30 -10.43 -42.36 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -9.44 Total: -1.96 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -2.14 Total: -15.49 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.40 Total: -36.92 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.93 -10.43 -42.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171509927.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.843 kcal (2) G-P(sol) polarization free energy of solvation -31.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds