Wall clock time and date at job start Tue Mar 31 2020 06:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47042 * 2 1 4 4 C 1.52996 * 109.46947 * 302.28774 * 3 2 1 5 5 C 1.52992 * 109.47516 * 295.06498 * 4 3 2 6 6 C 1.53002 * 109.46761 * 62.28784 * 3 2 1 7 7 N 1.46497 * 109.47328 * 65.00551 * 6 3 2 8 8 C 1.46507 * 119.99644 * 269.99552 * 7 6 3 9 9 C 1.50694 * 109.47084 * 270.00056 * 8 7 6 10 10 H 1.08000 * 120.00488 * 0.02562 * 9 8 7 11 11 C 1.37883 * 119.99746 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99706 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 120.00122 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.46854 * 89.99927 * 13 11 9 15 15 H 1.48500 * 109.47255 * 209.99864 * 13 11 9 16 16 H 1.48496 * 109.47353 * 329.99966 * 13 11 9 17 17 C 1.34770 * 120.00299 * 89.99485 * 7 6 3 18 18 O 1.21280 * 120.00147 * 0.02562 * 17 7 6 19 19 C 1.50708 * 119.99600 * 180.02562 * 17 7 6 20 20 C 1.53000 * 109.46593 * 180.02562 * 19 17 7 21 21 C 1.53778 * 113.61622 * 85.86635 * 20 19 17 22 22 C 1.54048 * 86.98734 * 140.01821 * 21 20 19 23 23 C 1.53778 * 87.07968 * 334.56929 * 22 21 20 24 24 H 1.08991 * 109.47669 * 66.20632 * 1 2 3 25 25 H 1.09002 * 109.47069 * 186.20847 * 1 2 3 26 26 H 1.09005 * 109.46754 * 306.20376 * 1 2 3 27 27 H 1.08994 * 109.47200 * 240.00082 * 2 1 3 28 28 H 1.08999 * 109.47474 * 119.99889 * 2 1 3 29 29 H 1.09002 * 109.47162 * 182.28634 * 3 2 1 30 30 H 1.09001 * 109.47260 * 55.06972 * 4 3 2 31 31 H 1.09006 * 109.47180 * 175.06296 * 4 3 2 32 32 H 1.09003 * 109.46790 * 305.39957 * 5 4 3 33 33 H 1.08999 * 109.47229 * 65.39069 * 5 4 3 34 34 H 1.08994 * 109.47708 * 185.39562 * 5 4 3 35 35 H 1.09002 * 109.47186 * 304.99626 * 6 3 2 36 36 H 1.09005 * 109.46570 * 185.00226 * 6 3 2 37 37 H 1.09001 * 109.46851 * 29.99942 * 8 7 6 38 38 H 1.09000 * 109.46937 * 149.99868 * 8 7 6 39 39 H 0.96998 * 119.99719 * 180.02562 * 12 11 9 40 40 H 1.08991 * 109.47190 * 60.00607 * 19 17 7 41 41 H 1.08992 * 109.47341 * 299.99788 * 19 17 7 42 42 H 1.09000 * 112.85514 * 314.66305 * 20 19 17 43 43 H 1.09002 * 113.61355 * 254.60712 * 21 20 19 44 44 H 1.08992 * 113.61496 * 25.51187 * 21 20 19 45 45 H 1.09004 * 113.61783 * 220.01769 * 22 21 20 46 46 H 1.08999 * 113.61438 * 89.11719 * 22 21 20 47 47 H 1.09003 * 113.60908 * 270.88754 * 23 22 21 48 48 H 1.08992 * 113.69164 * 139.98853 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.4835 2.1802 -1.2194 5 6 2.0447 1.5510 -2.4961 6 6 1.5775 2.1469 1.2771 7 7 2.2060 1.5137 2.4390 8 6 1.5433 0.3926 3.1100 9 6 0.6451 0.9191 4.1995 10 1 0.5745 1.9825 4.3743 11 6 -0.0875 0.0433 4.9724 12 7 -0.8718 0.5029 5.9228 13 14 0.0329 -1.7959 4.6686 14 1 1.1242 -2.3645 5.5000 15 1 -1.2538 -2.4428 5.0308 16 1 0.3242 -2.0426 3.2335 17 6 3.3938 1.9625 2.8907 18 8 3.9422 2.8909 2.3355 19 6 4.0406 1.3107 4.0857 20 6 5.3697 2.0054 4.3884 21 6 5.2257 3.2482 5.2824 22 6 6.5115 2.7856 5.9935 23 6 6.1536 1.3594 5.5431 24 1 -0.3634 0.4146 -0.9402 25 1 -0.3633 -1.0217 0.1111 26 1 -0.3633 0.6070 0.8293 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.1292 1.4429 -0.0410 30 1 0.3961 2.1046 -1.2248 31 1 1.7745 3.2297 -1.1733 32 1 3.1336 1.5401 -2.4474 33 1 1.6751 0.5300 -2.5908 34 1 1.7255 2.1346 -3.3595 35 1 0.4936 2.0691 1.3628 36 1 1.8642 3.1978 1.2365 37 1 0.9483 -0.1639 2.3858 38 1 2.2950 -0.2659 3.5454 39 1 -1.3868 -0.1133 6.4668 40 1 4.2213 0.2574 3.8716 41 1 3.3807 1.3980 4.9488 42 1 5.9706 2.1772 3.4953 43 1 5.3376 4.1891 4.7435 44 1 4.3422 3.2271 5.9204 45 1 6.4857 2.9214 7.0747 46 1 7.4244 3.1707 5.5393 47 1 5.5232 0.8229 6.2523 48 1 7.0131 0.7753 5.2144 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173081273.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:12 Heat of formation + Delta-G solvation = -45.688407 kcal Electronic energy + Delta-G solvation = -23729.480783 eV Core-core repulsion = 20591.091380 eV Total energy + Delta-G solvation = -3138.389402 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.66083 -38.27647 -36.91259 -34.56503 -32.44603 -30.97489 -30.29255 -28.70741 -27.01979 -25.29643 -24.41095 -23.46785 -22.60442 -22.11227 -19.14227 -18.88704 -18.02152 -17.11750 -16.25122 -15.71887 -15.40941 -14.98605 -14.90237 -14.32267 -14.04669 -13.90806 -13.52303 -13.00819 -12.84016 -12.70395 -12.38864 -12.18203 -12.12630 -11.93441 -11.73923 -11.49222 -11.41708 -11.26772 -11.07275 -10.95209 -10.79672 -10.69842 -10.37097 -10.27768 -10.13538 -10.08627 -10.02388 -9.97680 -9.83227 -9.59326 -8.94120 -8.70340 -7.65171 -6.21683 -4.22470 3.15928 3.24119 3.25714 3.45422 3.91124 4.25912 4.89600 4.94342 5.02943 5.09102 5.09530 5.11466 5.17668 5.19684 5.42901 5.56127 5.57822 5.63626 5.75816 5.89519 5.91512 5.92834 5.99189 6.02798 6.03796 6.06399 6.07582 6.11924 6.13731 6.17923 6.30866 6.35858 6.38713 6.41792 6.45774 6.50664 6.56798 6.59863 6.65331 6.74223 6.85907 6.88465 7.41712 7.47913 8.18934 8.45205 8.84200 9.03155 9.38445 10.91102 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.010069 B = 0.007586 C = 0.004813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.142205 B = 3690.291572 C = 5815.629468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.122 4.122 3 C -0.100 4.100 4 C -0.119 4.119 5 C -0.149 4.149 6 C 0.122 3.878 7 N -0.589 5.589 8 C 0.202 3.798 9 C -0.538 4.538 10 H 0.077 0.923 11 C 0.077 3.923 12 N -0.892 5.892 13 Si 0.867 3.133 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.263 1.263 17 C 0.519 3.481 18 O -0.571 6.571 19 C -0.130 4.130 20 C -0.091 4.091 21 C -0.132 4.132 22 C -0.143 4.143 23 C -0.139 4.139 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.048 0.952 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.043 0.957 38 H 0.027 0.973 39 H 0.266 0.734 40 H 0.084 0.916 41 H 0.105 0.895 42 H 0.092 0.908 43 H 0.065 0.935 44 H 0.081 0.919 45 H 0.063 0.937 46 H 0.074 0.926 47 H 0.082 0.918 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.030 -0.869 -8.140 11.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.159 4.159 3 C -0.120 4.120 4 C -0.157 4.157 5 C -0.206 4.206 6 C -0.001 4.001 7 N -0.319 5.319 8 C 0.081 3.919 9 C -0.577 4.577 10 H 0.095 0.905 11 C -0.127 4.127 12 N -0.529 5.529 13 Si 0.693 3.307 14 H -0.199 1.199 15 H -0.209 1.209 16 H -0.187 1.187 17 C 0.308 3.692 18 O -0.452 6.452 19 C -0.169 4.169 20 C -0.110 4.110 21 C -0.170 4.170 22 C -0.180 4.180 23 C -0.177 4.177 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.061 0.939 38 H 0.044 0.956 39 H 0.076 0.924 40 H 0.102 0.898 41 H 0.124 0.876 42 H 0.110 0.890 43 H 0.084 0.916 44 H 0.099 0.901 45 H 0.082 0.918 46 H 0.093 0.907 47 H 0.100 0.900 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.150 -0.462 -8.273 11.622 hybrid contribution -0.249 -1.145 0.087 1.175 sum 7.901 -1.608 -8.186 11.490 Atomic orbital electron populations 1.21925 0.95982 1.01651 1.01953 1.21624 0.96237 0.96429 1.01617 1.21564 1.00391 0.95350 0.94668 1.21539 1.00798 0.99348 0.94003 1.21766 1.00870 1.00731 0.97233 1.21396 0.98049 0.96776 0.83927 1.47883 1.19842 1.34717 1.29429 1.19954 0.93243 0.85213 0.93493 1.21404 1.24903 0.95998 1.15349 0.90468 1.24867 0.94671 0.98503 0.94633 1.69895 1.27487 1.35136 1.20404 0.86987 0.78124 0.86101 0.79452 1.19892 1.20924 1.18725 1.20526 0.80919 0.83134 0.84637 1.90573 1.64209 1.30151 1.60302 1.21679 0.96827 1.00026 0.98395 1.22290 0.95502 0.96049 0.97136 1.22959 0.97588 0.98227 0.98200 1.22838 0.98202 0.97010 0.99986 1.22979 0.99833 0.96340 0.98508 0.92995 0.93324 0.91276 0.92739 0.91383 0.91359 0.91532 0.92176 0.93022 0.92721 0.93267 0.90149 0.91057 0.93888 0.95560 0.92425 0.89777 0.87638 0.88983 0.91641 0.90064 0.91847 0.90695 0.89969 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 8.45 37.16 0.31 -1.98 16 2 C -0.12 -1.80 4.86 -26.73 -0.13 -1.93 16 3 C -0.10 -1.53 2.37 -90.62 -0.21 -1.74 16 4 C -0.12 -1.53 5.14 -26.74 -0.14 -1.66 16 5 C -0.15 -1.66 9.53 37.15 0.35 -1.31 16 6 C 0.12 2.21 4.73 -4.04 -0.02 2.19 16 7 N -0.59 -11.88 2.28 -175.05 -0.40 -12.28 16 8 C 0.20 4.36 3.09 -5.19 -0.02 4.35 16 9 C -0.54 -13.94 9.84 -34.44 -0.34 -14.28 16 10 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 11 C 0.08 2.04 5.47 -17.82 -0.10 1.95 16 12 N -0.89 -25.69 13.96 55.43 0.77 -24.91 16 13 Si 0.87 19.59 27.47 -169.99 -4.67 14.92 16 14 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.26 -5.59 6.54 56.52 0.37 -5.22 16 17 C 0.52 10.55 7.67 -10.98 -0.08 10.46 16 18 O -0.57 -12.57 15.37 5.56 0.09 -12.49 16 19 C -0.13 -2.32 4.08 -27.88 -0.11 -2.43 16 20 C -0.09 -1.43 3.11 -89.81 -0.28 -1.71 16 21 C -0.13 -2.03 7.65 -25.78 -0.20 -2.23 16 22 C -0.14 -1.81 8.09 -25.78 -0.21 -2.02 16 23 C -0.14 -1.83 7.64 -25.92 -0.20 -2.03 16 24 H 0.05 0.65 6.64 -51.93 -0.34 0.31 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 1.13 5.62 -51.93 -0.29 0.84 16 27 H 0.05 0.72 6.80 -51.93 -0.35 0.37 16 28 H 0.07 1.13 5.69 -51.93 -0.30 0.84 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.07 0.82 6.26 -51.93 -0.33 0.50 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.59 6.89 -51.93 -0.36 0.23 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 1.47 6.05 -51.93 -0.31 1.16 16 36 H 0.07 1.35 7.42 -51.93 -0.39 0.96 16 37 H 0.04 0.91 3.92 -51.93 -0.20 0.71 16 38 H 0.03 0.56 5.87 -51.93 -0.30 0.25 16 39 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 40 H 0.08 1.39 7.40 -51.93 -0.38 1.00 16 41 H 0.11 2.05 7.73 -51.93 -0.40 1.65 16 42 H 0.09 1.51 7.73 -51.93 -0.40 1.11 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.08 1.31 7.92 -51.93 -0.41 0.90 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 48 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 361.24 15.07 5.44 5.44 Total: -1.00 -28.51 361.24 -8.72 -37.23 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -8.59 Total: 6.46 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: -1.37 Total: -14.38 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: 0.37 Total: -37.19 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.09 Total: -12.49 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.67 Total: 14.92 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.51 -8.72 -37.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173081273.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.456 kcal (2) G-P(sol) polarization free energy of solvation -28.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds