Wall clock time and date at job start Tue Mar 31 2020 06:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47042 * 2 1 4 4 C 1.52996 * 109.46947 * 302.28774 * 3 2 1 5 5 C 1.52992 * 109.47516 * 295.06498 * 4 3 2 6 6 C 1.53002 * 109.46761 * 62.28784 * 3 2 1 7 7 N 1.46497 * 109.47328 * 65.00551 * 6 3 2 8 8 C 1.46507 * 119.99644 * 269.99552 * 7 6 3 9 9 C 1.50694 * 109.47084 * 270.00056 * 8 7 6 10 10 H 1.08000 * 120.00488 * 0.02562 * 9 8 7 11 11 C 1.37883 * 119.99746 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99706 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 120.00122 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.46854 * 89.99927 * 13 11 9 15 15 H 1.48500 * 109.47255 * 209.99864 * 13 11 9 16 16 H 1.48496 * 109.47353 * 329.99966 * 13 11 9 17 17 C 1.34770 * 120.00299 * 89.99485 * 7 6 3 18 18 O 1.21280 * 120.00147 * 0.02562 * 17 7 6 19 19 C 1.50708 * 119.99600 * 180.02562 * 17 7 6 20 20 C 1.53000 * 109.46593 * 180.02562 * 19 17 7 21 21 C 1.53778 * 113.61622 * 85.86635 * 20 19 17 22 22 C 1.54048 * 86.98734 * 140.01821 * 21 20 19 23 23 C 1.53778 * 87.07968 * 334.56929 * 22 21 20 24 24 H 1.08991 * 109.47669 * 66.20632 * 1 2 3 25 25 H 1.09002 * 109.47069 * 186.20847 * 1 2 3 26 26 H 1.09005 * 109.46754 * 306.20376 * 1 2 3 27 27 H 1.08994 * 109.47200 * 240.00082 * 2 1 3 28 28 H 1.08999 * 109.47474 * 119.99889 * 2 1 3 29 29 H 1.09002 * 109.47162 * 182.28634 * 3 2 1 30 30 H 1.09001 * 109.47260 * 55.06972 * 4 3 2 31 31 H 1.09006 * 109.47180 * 175.06296 * 4 3 2 32 32 H 1.09003 * 109.46790 * 305.39957 * 5 4 3 33 33 H 1.08999 * 109.47229 * 65.39069 * 5 4 3 34 34 H 1.08994 * 109.47708 * 185.39562 * 5 4 3 35 35 H 1.09002 * 109.47186 * 304.99626 * 6 3 2 36 36 H 1.09005 * 109.46570 * 185.00226 * 6 3 2 37 37 H 1.09001 * 109.46851 * 29.99942 * 8 7 6 38 38 H 1.09000 * 109.46937 * 149.99868 * 8 7 6 39 39 H 0.96998 * 119.99719 * 180.02562 * 12 11 9 40 40 H 1.08991 * 109.47190 * 60.00607 * 19 17 7 41 41 H 1.08992 * 109.47341 * 299.99788 * 19 17 7 42 42 H 1.09000 * 112.85514 * 314.66305 * 20 19 17 43 43 H 1.09002 * 113.61355 * 254.60712 * 21 20 19 44 44 H 1.08992 * 113.61496 * 25.51187 * 21 20 19 45 45 H 1.09004 * 113.61783 * 220.01769 * 22 21 20 46 46 H 1.08999 * 113.61438 * 89.11719 * 22 21 20 47 47 H 1.09003 * 113.60908 * 270.88754 * 23 22 21 48 48 H 1.08992 * 113.69164 * 139.98853 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.4835 2.1802 -1.2194 5 6 2.0447 1.5510 -2.4961 6 6 1.5775 2.1469 1.2771 7 7 2.2060 1.5137 2.4390 8 6 1.5433 0.3926 3.1100 9 6 0.6451 0.9191 4.1995 10 1 0.5745 1.9825 4.3743 11 6 -0.0875 0.0433 4.9724 12 7 -0.8718 0.5029 5.9228 13 14 0.0329 -1.7959 4.6686 14 1 1.1242 -2.3645 5.5000 15 1 -1.2538 -2.4428 5.0308 16 1 0.3242 -2.0426 3.2335 17 6 3.3938 1.9625 2.8907 18 8 3.9422 2.8909 2.3355 19 6 4.0406 1.3107 4.0857 20 6 5.3697 2.0054 4.3884 21 6 5.2257 3.2482 5.2824 22 6 6.5115 2.7856 5.9935 23 6 6.1536 1.3594 5.5431 24 1 -0.3634 0.4146 -0.9402 25 1 -0.3633 -1.0217 0.1111 26 1 -0.3633 0.6070 0.8293 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.1292 1.4429 -0.0410 30 1 0.3961 2.1046 -1.2248 31 1 1.7745 3.2297 -1.1733 32 1 3.1336 1.5401 -2.4474 33 1 1.6751 0.5300 -2.5908 34 1 1.7255 2.1346 -3.3595 35 1 0.4936 2.0691 1.3628 36 1 1.8642 3.1978 1.2365 37 1 0.9483 -0.1639 2.3858 38 1 2.2950 -0.2659 3.5454 39 1 -1.3868 -0.1133 6.4668 40 1 4.2213 0.2574 3.8716 41 1 3.3807 1.3980 4.9488 42 1 5.9706 2.1772 3.4953 43 1 5.3376 4.1891 4.7435 44 1 4.3422 3.2271 5.9204 45 1 6.4857 2.9214 7.0747 46 1 7.4244 3.1707 5.5393 47 1 5.5232 0.8229 6.2523 48 1 7.0131 0.7753 5.2144 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173081273.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:12 Heat of formation + Delta-G solvation = -59.437878 kcal Electronic energy + Delta-G solvation = -23730.077004 eV Core-core repulsion = 20591.091380 eV Total energy + Delta-G solvation = -3138.985624 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.19121 -39.51467 -38.26993 -36.22884 -34.42101 -32.07584 -31.69197 -30.36335 -28.56233 -26.45209 -25.69219 -24.82329 -24.15632 -23.45618 -20.37487 -20.16001 -19.56462 -19.11538 -17.84314 -17.21436 -16.74810 -16.38986 -16.27653 -15.84831 -15.48583 -15.22551 -14.84134 -14.62401 -14.26719 -13.95531 -13.81641 -13.55481 -13.46599 -13.29885 -13.11396 -12.77165 -12.71533 -12.59524 -12.51020 -12.35569 -12.28289 -12.03958 -11.92046 -11.68828 -11.49772 -11.41298 -11.28255 -11.24739 -11.18423 -11.03423 -10.79004 -10.51234 -9.33776 -8.29410 -6.36011 1.38834 1.40448 1.49860 1.80216 2.33715 2.35198 3.04801 3.61287 3.77740 3.83074 3.90049 3.91956 4.00192 4.02589 4.13149 4.37641 4.42964 4.50617 4.58555 4.61068 4.65281 4.68478 4.74659 4.78104 4.80835 4.89046 4.90162 4.91325 4.94081 5.01044 5.06823 5.07288 5.12772 5.13683 5.15704 5.31068 5.33034 5.40688 5.41918 5.45964 5.48977 5.65282 5.66800 5.78413 6.20611 6.64800 6.72560 7.26117 7.40623 8.87170 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.010069 B = 0.007586 C = 0.004813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.142205 B = 3690.291572 C = 5815.629468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.119 4.119 3 C -0.089 4.089 4 C -0.116 4.116 5 C -0.144 4.144 6 C 0.118 3.882 7 N -0.593 5.593 8 C 0.215 3.785 9 C -0.537 4.537 10 H 0.025 0.975 11 C 0.021 3.979 12 N -0.943 5.943 13 Si 0.934 3.066 14 H -0.261 1.261 15 H -0.286 1.286 16 H -0.236 1.236 17 C 0.510 3.490 18 O -0.592 6.592 19 C -0.125 4.125 20 C -0.095 4.095 21 C -0.144 4.144 22 C -0.129 4.129 23 C -0.128 4.128 24 H 0.072 0.928 25 H 0.054 0.946 26 H 0.043 0.957 27 H 0.078 0.922 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.048 0.952 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.041 0.959 39 H 0.268 0.732 40 H 0.102 0.898 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.053 0.947 44 H 0.064 0.936 45 H 0.076 0.924 46 H 0.090 0.910 47 H 0.081 0.919 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.390 -3.176 -9.664 13.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C -0.109 4.109 4 C -0.154 4.154 5 C -0.201 4.201 6 C -0.004 4.004 7 N -0.322 5.322 8 C 0.093 3.907 9 C -0.576 4.576 10 H 0.044 0.956 11 C -0.178 4.178 12 N -0.583 5.583 13 Si 0.756 3.244 14 H -0.185 1.185 15 H -0.212 1.212 16 H -0.159 1.159 17 C 0.300 3.700 18 O -0.474 6.474 19 C -0.165 4.165 20 C -0.114 4.114 21 C -0.182 4.182 22 C -0.166 4.166 23 C -0.166 4.166 24 H 0.091 0.909 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.096 0.904 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.077 0.923 40 H 0.120 0.880 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.094 0.906 46 H 0.109 0.891 47 H 0.100 0.900 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.523 -2.759 -9.819 13.954 hybrid contribution -0.724 -0.264 0.568 0.957 sum 8.799 -3.023 -9.252 13.121 Atomic orbital electron populations 1.21902 0.95635 1.01691 1.02067 1.21600 0.96437 0.95646 1.01905 1.21441 0.99507 0.95971 0.93938 1.21526 1.01193 0.98920 0.93777 1.21731 1.00614 1.01266 0.96524 1.21515 0.97650 0.96321 0.84949 1.47963 1.19827 1.34535 1.29912 1.19769 0.92913 0.85597 0.92435 1.21521 1.25737 0.93659 1.16685 0.95639 1.25756 0.93990 1.03999 0.94049 1.70060 1.29030 1.37205 1.22000 0.85912 0.78289 0.79160 0.81015 1.18545 1.21156 1.15860 1.21031 0.80926 0.82945 0.85075 1.90551 1.64767 1.30991 1.61118 1.21685 0.97385 1.01181 0.96223 1.22327 0.94611 0.96595 0.97873 1.22991 0.98868 0.97771 0.98554 1.22806 0.97003 0.96151 1.00616 1.22936 0.99942 0.96813 0.96876 0.90877 0.92670 0.93818 0.90364 0.93101 0.92713 0.90831 0.92697 0.93316 0.91882 0.91698 0.90761 0.92657 0.92569 0.94062 0.92344 0.87985 0.89681 0.89459 0.92827 0.91702 0.90558 0.89099 0.90012 0.89762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.18 8.45 71.98 0.61 -3.57 16 2 C -0.12 -3.25 4.86 30.60 0.15 -3.11 16 3 C -0.09 -2.64 2.37 -10.79 -0.03 -2.67 16 4 C -0.12 -2.81 5.14 30.59 0.16 -2.65 16 5 C -0.14 -2.82 9.53 71.98 0.69 -2.14 16 6 C 0.12 4.39 4.73 86.38 0.41 4.80 16 7 N -0.59 -24.37 2.28 -826.14 -1.88 -26.26 16 8 C 0.21 9.21 3.09 85.63 0.26 9.48 16 9 C -0.54 -28.72 9.84 25.60 0.25 -28.47 16 10 H 0.03 1.58 8.06 -2.91 -0.02 1.56 16 11 C 0.02 1.12 5.47 84.66 0.46 1.59 16 12 N -0.94 -56.07 13.96 21.45 0.30 -55.77 16 13 Si 0.93 39.56 27.47 68.60 1.88 41.44 16 14 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 15 H -0.29 -12.20 7.11 99.48 0.71 -11.50 16 16 H -0.24 -8.89 6.54 99.48 0.65 -8.24 16 17 C 0.51 21.19 7.67 87.66 0.67 21.86 16 18 O -0.59 -26.73 15.37 -3.03 -0.05 -26.78 16 19 C -0.13 -4.49 4.08 29.85 0.12 -4.37 16 20 C -0.10 -2.95 3.11 -10.27 -0.03 -2.99 16 21 C -0.14 -4.48 7.65 31.21 0.24 -4.24 16 22 C -0.13 -3.02 8.09 31.21 0.25 -2.77 16 23 C -0.13 -3.11 7.64 31.12 0.24 -2.88 16 24 H 0.07 1.63 6.64 -2.39 -0.02 1.61 16 25 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.04 1.39 5.62 -2.38 -0.01 1.38 16 27 H 0.08 1.80 6.80 -2.39 -0.02 1.79 16 28 H 0.05 1.57 5.69 -2.39 -0.01 1.56 16 29 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.07 1.68 6.26 -2.39 -0.01 1.66 16 31 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 32 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.06 1.14 6.89 -2.39 -0.02 1.12 16 34 H 0.06 1.08 8.14 -2.39 -0.02 1.07 16 35 H 0.07 2.82 6.05 -2.39 -0.01 2.80 16 36 H 0.05 2.19 7.42 -2.38 -0.02 2.18 16 37 H 0.06 2.30 3.92 -2.39 -0.01 2.29 16 38 H 0.04 1.67 5.87 -2.39 -0.01 1.66 16 39 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 40 H 0.10 3.24 7.40 -2.39 -0.02 3.22 16 41 H 0.08 3.42 7.73 -2.39 -0.02 3.40 16 42 H 0.09 2.81 7.73 -2.39 -0.02 2.79 16 43 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.06 2.19 7.92 -2.39 -0.02 2.17 16 45 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 46 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 47 H 0.08 2.01 8.10 -2.39 -0.02 1.99 16 48 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -63.92 361.24 5.57 -58.35 By element: Atomic # 1 Polarization: 30.27 SS G_CDS: 0.86 Total: 31.12 kcal Atomic # 6 Polarization: -26.57 SS G_CDS: 4.45 Total: -22.11 kcal Atomic # 7 Polarization: -80.44 SS G_CDS: -1.58 Total: -82.02 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -0.05 Total: -26.78 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 1.88 Total: 41.44 kcal Total: -63.92 5.57 -58.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173081273.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.084 kcal (2) G-P(sol) polarization free energy of solvation -63.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds