Wall clock time and date at job start Tue Mar 31 2020 06:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53000 * 109.46913 * 2 1 4 4 C 1.52995 * 109.47470 * 303.58512 * 3 2 1 5 5 C 1.53002 * 109.46887 * 294.55858 * 4 3 2 6 6 C 1.53001 * 109.46779 * 63.58303 * 3 2 1 7 7 N 1.46502 * 109.47600 * 64.99869 * 6 3 2 8 8 C 1.46504 * 119.99769 * 270.00123 * 7 6 3 9 9 C 1.50690 * 109.47208 * 267.03582 * 8 7 6 10 10 H 1.08005 * 120.00314 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00141 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00101 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 120.00079 * 180.02562 * 11 9 8 14 14 H 1.48489 * 109.47308 * 90.00007 * 13 11 9 15 15 H 1.48501 * 109.47137 * 210.00525 * 13 11 9 16 16 H 1.48500 * 109.46772 * 329.99948 * 13 11 9 17 17 C 1.34772 * 120.00081 * 89.99480 * 7 6 3 18 18 O 1.21277 * 119.99964 * 4.62915 * 17 7 6 19 19 C 1.50703 * 120.00174 * 184.62775 * 17 7 6 20 20 H 1.08997 * 109.46848 * 306.55370 * 19 17 7 21 21 C 1.53006 * 109.47071 * 66.54902 * 19 17 7 22 22 C 1.52997 * 109.47055 * 186.55114 * 19 17 7 23 23 C 1.53008 * 117.49526 * 180.02562 * 22 19 17 24 24 C 1.53001 * 117.49638 * 111.38129 * 22 19 17 25 25 H 1.08992 * 109.46639 * 305.54252 * 1 2 3 26 26 H 1.08998 * 109.47349 * 65.54566 * 1 2 3 27 27 H 1.08998 * 109.46411 * 185.54902 * 1 2 3 28 28 H 1.09006 * 109.46753 * 240.00623 * 2 1 3 29 29 H 1.08993 * 109.47085 * 120.00587 * 2 1 3 30 30 H 1.09001 * 109.46951 * 183.57700 * 3 2 1 31 31 H 1.08997 * 109.47535 * 54.55576 * 4 3 2 32 32 H 1.09001 * 109.47044 * 174.56360 * 4 3 2 33 33 H 1.08999 * 109.47178 * 305.50429 * 5 4 3 34 34 H 1.09001 * 109.47092 * 65.50485 * 5 4 3 35 35 H 1.09002 * 109.47434 * 185.50760 * 5 4 3 36 36 H 1.09003 * 109.47010 * 304.99746 * 6 3 2 37 37 H 1.09005 * 109.47094 * 184.99973 * 6 3 2 38 38 H 1.08999 * 109.46890 * 27.04040 * 8 7 6 39 39 H 1.09006 * 109.47079 * 147.03462 * 8 7 6 40 40 H 0.96999 * 120.00071 * 179.97438 * 12 11 9 41 41 H 1.09000 * 109.46930 * 309.46343 * 21 19 17 42 42 H 1.08998 * 109.47000 * 69.46152 * 21 19 17 43 43 H 1.08997 * 109.47299 * 189.45940 * 21 19 17 44 44 H 1.08995 * 115.56215 * 325.68534 * 22 19 17 45 45 H 1.08994 * 117.49917 * 145.01944 * 23 22 19 46 46 H 1.09001 * 117.49715 * 359.97438 * 23 22 19 47 47 H 1.09002 * 117.49888 * 359.97438 * 24 22 19 48 48 H 1.08998 * 117.51942 * 214.96732 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.4578 2.1894 -1.2016 5 6 2.0016 1.5779 -2.4944 6 6 1.6049 2.1372 1.2919 7 7 2.2579 1.4953 2.4355 8 6 1.6095 0.3690 3.1119 9 6 0.7921 0.8814 4.2695 10 1 0.7585 1.9402 4.4802 11 6 0.0862 -0.0013 5.0592 12 7 0.1267 -1.2904 4.8025 13 14 -0.9276 0.6340 6.4938 14 1 -2.3059 0.9355 6.0308 15 1 -0.9782 -0.3985 7.5599 16 1 -0.3045 1.8702 7.0312 17 6 3.4551 1.9407 2.8652 18 8 3.9530 2.9245 2.3602 19 6 4.1752 1.2163 3.9733 20 1 3.5121 1.1156 4.8325 21 6 4.5940 -0.1726 3.4868 22 6 5.4182 2.0110 4.3786 23 6 6.2905 1.4364 5.4967 24 6 5.4181 2.6658 5.7614 25 1 -0.3632 0.5974 0.8362 26 1 -0.3634 0.4254 -0.9354 27 1 -0.3632 -1.0229 0.0994 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.1282 1.4432 -0.0641 31 1 0.3711 2.1061 -1.1894 32 1 1.7424 3.2402 -1.1490 33 1 3.0911 1.5724 -2.4636 34 1 1.6358 0.5561 -2.5950 35 1 1.6653 2.1697 -3.3458 36 1 0.5231 2.0586 1.4001 37 1 1.8908 3.1884 1.2533 38 1 0.9584 -0.1508 2.4091 39 1 2.3697 -0.3199 3.4805 40 1 -0.3696 -1.9114 5.3582 41 1 3.7353 -0.6762 3.0428 42 1 5.3828 -0.0738 2.7412 43 1 4.9621 -0.7572 4.3299 44 1 5.9214 2.5416 3.5704 45 1 7.3672 1.5895 5.4242 46 1 5.9785 0.4925 5.9437 47 1 4.5324 2.5308 6.3822 48 1 5.9213 3.6273 5.8634 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175312640.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:30 Heat of formation + Delta-G solvation = -37.478069 kcal Electronic energy + Delta-G solvation = -24036.171812 eV Core-core repulsion = 20898.138437 eV Total energy + Delta-G solvation = -3138.033375 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.63847 -37.60639 -36.40716 -34.57395 -32.46166 -31.64046 -30.78198 -28.45898 -26.71040 -24.71775 -23.97930 -22.95273 -22.75798 -21.94315 -20.15767 -18.78066 -17.95764 -16.81841 -16.20406 -15.68016 -15.30264 -14.77803 -14.67751 -14.15673 -14.05924 -13.75195 -13.36583 -12.88910 -12.84255 -12.68210 -12.34870 -12.12056 -11.77845 -11.65569 -11.45271 -11.32475 -11.30585 -11.13381 -11.04694 -10.99105 -10.79886 -10.63109 -10.33261 -10.19824 -10.13414 -10.01501 -9.96349 -9.88872 -9.62158 -9.51478 -8.82682 -8.47141 -7.59083 -6.16945 -4.23069 3.22157 3.29757 3.33056 3.52632 3.95160 4.21743 4.35752 5.04107 5.12936 5.16036 5.17591 5.27528 5.28254 5.30964 5.49755 5.55645 5.65722 5.72100 5.83354 5.90484 5.93661 5.95130 6.00657 6.02955 6.08127 6.14110 6.16840 6.20725 6.24898 6.28833 6.41491 6.42326 6.43546 6.46754 6.54789 6.63167 6.66008 6.71134 6.81224 6.87683 7.00663 7.30301 7.63617 7.79611 8.11142 8.43380 8.83023 9.13035 9.44270 10.89066 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.010336 B = 0.007848 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2708.254521 B = 3567.051286 C = 5504.674242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.099 4.099 4 C -0.119 4.119 5 C -0.148 4.148 6 C 0.121 3.879 7 N -0.592 5.592 8 C 0.218 3.782 9 C -0.536 4.536 10 H 0.058 0.942 11 C 0.066 3.934 12 N -0.890 5.890 13 Si 0.892 3.108 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.273 1.273 17 C 0.525 3.475 18 O -0.576 6.576 19 C -0.078 4.078 20 H 0.107 0.893 21 C -0.143 4.143 22 C -0.127 4.127 23 C -0.182 4.182 24 C -0.181 4.181 25 H 0.065 0.935 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.047 0.953 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.047 0.953 39 H 0.052 0.948 40 H 0.264 0.736 41 H 0.078 0.922 42 H 0.050 0.950 43 H 0.059 0.941 44 H 0.110 0.890 45 H 0.088 0.912 46 H 0.093 0.907 47 H 0.094 0.906 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.285 1.625 -6.329 8.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.119 4.119 4 C -0.157 4.157 5 C -0.206 4.206 6 C -0.003 4.003 7 N -0.321 5.321 8 C 0.099 3.901 9 C -0.575 4.575 10 H 0.077 0.923 11 C -0.137 4.137 12 N -0.529 5.529 13 Si 0.719 3.281 14 H -0.206 1.206 15 H -0.211 1.211 16 H -0.198 1.198 17 C 0.314 3.686 18 O -0.458 6.458 19 C -0.099 4.099 20 H 0.125 0.875 21 C -0.200 4.200 22 C -0.145 4.145 23 C -0.219 4.219 24 C -0.218 4.218 25 H 0.084 0.916 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.096 0.904 42 H 0.069 0.931 43 H 0.078 0.922 44 H 0.129 0.871 45 H 0.107 0.893 46 H 0.112 0.888 47 H 0.113 0.887 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.439 1.928 -6.520 8.707 hybrid contribution -0.767 0.214 0.972 1.257 sum 4.672 2.143 -5.547 7.562 Atomic orbital electron populations 1.21870 0.96021 1.01694 1.01438 1.21613 0.96200 0.96164 1.01825 1.21555 1.00201 0.95574 0.94557 1.21549 1.00777 0.99260 0.94130 1.21765 1.00895 1.00811 0.97107 1.21377 0.97664 0.96654 0.84581 1.48135 1.18723 1.34843 1.30439 1.19901 0.93828 0.83924 0.92492 1.21538 1.29098 0.93937 1.12930 0.92334 1.24896 0.96427 0.94743 0.97591 1.69910 1.42007 1.01478 1.39481 0.86588 0.80642 0.78714 0.82119 1.20585 1.21087 1.19830 1.20340 0.81262 0.83834 0.83214 1.90548 1.67797 1.27442 1.59994 1.20765 0.95299 0.95019 0.98807 0.87459 1.21888 1.01934 0.94895 1.01285 1.22081 0.98109 1.02065 0.92265 1.22930 0.97056 0.98009 1.03941 1.22989 1.02365 0.96557 0.99905 0.91591 0.93377 0.93166 0.92963 0.90846 0.91548 0.91550 0.92335 0.93040 0.92660 0.93354 0.90434 0.91313 0.93491 0.93077 0.92614 0.90387 0.93131 0.92167 0.87148 0.89320 0.88832 0.88744 0.89353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 8.49 37.16 0.32 -2.01 16 2 C -0.12 -1.88 4.85 -26.73 -0.13 -2.01 16 3 C -0.10 -1.57 2.36 -90.62 -0.21 -1.78 16 4 C -0.12 -1.58 5.12 -26.73 -0.14 -1.72 16 5 C -0.15 -1.72 9.54 37.16 0.35 -1.37 16 6 C 0.12 2.24 4.77 -4.04 -0.02 2.22 16 7 N -0.59 -12.24 2.28 -175.05 -0.40 -12.64 16 8 C 0.22 4.94 3.54 -5.20 -0.02 4.92 16 9 C -0.54 -13.69 8.98 -34.45 -0.31 -14.00 16 10 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 11 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 12 N -0.89 -23.85 13.29 55.43 0.74 -23.11 16 13 Si 0.89 20.43 29.54 -169.99 -5.02 15.41 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 17 C 0.53 11.05 6.95 -10.99 -0.08 10.98 16 18 O -0.58 -13.19 15.17 5.56 0.08 -13.11 16 19 C -0.08 -1.46 2.07 -91.77 -0.19 -1.65 16 20 H 0.11 2.21 7.21 -51.93 -0.37 1.84 16 21 C -0.14 -2.40 8.46 37.16 0.31 -2.09 16 22 C -0.13 -2.12 4.80 -90.62 -0.44 -2.56 16 23 C -0.18 -2.53 9.84 -26.70 -0.26 -2.80 16 24 C -0.18 -2.76 10.18 -26.70 -0.27 -3.03 16 25 H 0.07 1.13 5.70 -51.93 -0.30 0.83 16 26 H 0.05 0.63 6.57 -51.93 -0.34 0.29 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.73 6.88 -51.93 -0.36 0.37 16 29 H 0.07 1.31 5.64 -51.93 -0.29 1.01 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.07 0.85 6.19 -51.93 -0.32 0.52 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.62 6.94 -51.93 -0.36 0.26 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 1.44 6.11 -51.93 -0.32 1.12 16 37 H 0.07 1.32 7.36 -51.93 -0.38 0.94 16 38 H 0.05 1.10 5.02 -51.93 -0.26 0.84 16 39 H 0.05 1.19 4.18 -51.93 -0.22 0.97 16 40 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 41 H 0.08 1.42 5.30 -51.93 -0.28 1.14 16 42 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 43 H 0.06 0.92 7.65 -51.93 -0.40 0.52 16 44 H 0.11 1.96 7.38 -51.93 -0.38 1.58 16 45 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.09 1.27 7.74 -51.93 -0.40 0.87 16 47 H 0.09 1.49 8.05 -51.93 -0.42 1.07 16 48 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 362.17 15.07 5.46 5.46 Total: -1.00 -27.33 362.17 -8.64 -35.97 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -8.32 Total: 7.29 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: -1.18 Total: -15.27 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 0.34 Total: -35.75 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.08 Total: -13.11 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -27.33 -8.64 -35.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175312640.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.511 kcal (2) G-P(sol) polarization free energy of solvation -27.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds