Wall clock time and date at job start Tue Mar 31 2020 06:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53000 * 109.46913 * 2 1 4 4 C 1.52995 * 109.47470 * 303.58512 * 3 2 1 5 5 C 1.53002 * 109.46887 * 294.55858 * 4 3 2 6 6 C 1.53001 * 109.46779 * 63.58303 * 3 2 1 7 7 N 1.46502 * 109.47600 * 64.99869 * 6 3 2 8 8 C 1.46504 * 119.99769 * 270.00123 * 7 6 3 9 9 C 1.50690 * 109.47208 * 267.03582 * 8 7 6 10 10 H 1.08005 * 120.00314 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00141 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00101 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 120.00079 * 180.02562 * 11 9 8 14 14 H 1.48489 * 109.47308 * 90.00007 * 13 11 9 15 15 H 1.48501 * 109.47137 * 210.00525 * 13 11 9 16 16 H 1.48500 * 109.46772 * 329.99948 * 13 11 9 17 17 C 1.34772 * 120.00081 * 89.99480 * 7 6 3 18 18 O 1.21277 * 119.99964 * 4.62915 * 17 7 6 19 19 C 1.50703 * 120.00174 * 184.62775 * 17 7 6 20 20 H 1.08997 * 109.46848 * 306.55370 * 19 17 7 21 21 C 1.53006 * 109.47071 * 66.54902 * 19 17 7 22 22 C 1.52997 * 109.47055 * 186.55114 * 19 17 7 23 23 C 1.53008 * 117.49526 * 180.02562 * 22 19 17 24 24 C 1.53001 * 117.49638 * 111.38129 * 22 19 17 25 25 H 1.08992 * 109.46639 * 305.54252 * 1 2 3 26 26 H 1.08998 * 109.47349 * 65.54566 * 1 2 3 27 27 H 1.08998 * 109.46411 * 185.54902 * 1 2 3 28 28 H 1.09006 * 109.46753 * 240.00623 * 2 1 3 29 29 H 1.08993 * 109.47085 * 120.00587 * 2 1 3 30 30 H 1.09001 * 109.46951 * 183.57700 * 3 2 1 31 31 H 1.08997 * 109.47535 * 54.55576 * 4 3 2 32 32 H 1.09001 * 109.47044 * 174.56360 * 4 3 2 33 33 H 1.08999 * 109.47178 * 305.50429 * 5 4 3 34 34 H 1.09001 * 109.47092 * 65.50485 * 5 4 3 35 35 H 1.09002 * 109.47434 * 185.50760 * 5 4 3 36 36 H 1.09003 * 109.47010 * 304.99746 * 6 3 2 37 37 H 1.09005 * 109.47094 * 184.99973 * 6 3 2 38 38 H 1.08999 * 109.46890 * 27.04040 * 8 7 6 39 39 H 1.09006 * 109.47079 * 147.03462 * 8 7 6 40 40 H 0.96999 * 120.00071 * 179.97438 * 12 11 9 41 41 H 1.09000 * 109.46930 * 309.46343 * 21 19 17 42 42 H 1.08998 * 109.47000 * 69.46152 * 21 19 17 43 43 H 1.08997 * 109.47299 * 189.45940 * 21 19 17 44 44 H 1.08995 * 115.56215 * 325.68534 * 22 19 17 45 45 H 1.08994 * 117.49917 * 145.01944 * 23 22 19 46 46 H 1.09001 * 117.49715 * 359.97438 * 23 22 19 47 47 H 1.09002 * 117.49888 * 359.97438 * 24 22 19 48 48 H 1.08998 * 117.51942 * 214.96732 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.4578 2.1894 -1.2016 5 6 2.0016 1.5779 -2.4944 6 6 1.6049 2.1372 1.2919 7 7 2.2579 1.4953 2.4355 8 6 1.6095 0.3690 3.1119 9 6 0.7921 0.8814 4.2695 10 1 0.7585 1.9402 4.4802 11 6 0.0862 -0.0013 5.0592 12 7 0.1267 -1.2904 4.8025 13 14 -0.9276 0.6340 6.4938 14 1 -2.3059 0.9355 6.0308 15 1 -0.9782 -0.3985 7.5599 16 1 -0.3045 1.8702 7.0312 17 6 3.4551 1.9407 2.8652 18 8 3.9530 2.9245 2.3602 19 6 4.1752 1.2163 3.9733 20 1 3.5121 1.1156 4.8325 21 6 4.5940 -0.1726 3.4868 22 6 5.4182 2.0110 4.3786 23 6 6.2905 1.4364 5.4967 24 6 5.4181 2.6658 5.7614 25 1 -0.3632 0.5974 0.8362 26 1 -0.3634 0.4254 -0.9354 27 1 -0.3632 -1.0229 0.0994 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.1282 1.4432 -0.0641 31 1 0.3711 2.1061 -1.1894 32 1 1.7424 3.2402 -1.1490 33 1 3.0911 1.5724 -2.4636 34 1 1.6358 0.5561 -2.5950 35 1 1.6653 2.1697 -3.3458 36 1 0.5231 2.0586 1.4001 37 1 1.8908 3.1884 1.2533 38 1 0.9584 -0.1508 2.4091 39 1 2.3697 -0.3199 3.4805 40 1 -0.3696 -1.9114 5.3582 41 1 3.7353 -0.6762 3.0428 42 1 5.3828 -0.0738 2.7412 43 1 4.9621 -0.7572 4.3299 44 1 5.9214 2.5416 3.5704 45 1 7.3672 1.5895 5.4242 46 1 5.9785 0.4925 5.9437 47 1 4.5324 2.5308 6.3822 48 1 5.9213 3.6273 5.8634 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175312640.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:29 Heat of formation + Delta-G solvation = -49.191754 kcal Electronic energy + Delta-G solvation = -24036.679756 eV Core-core repulsion = 20898.138437 eV Total energy + Delta-G solvation = -3138.541319 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.24510 -38.93156 -37.80116 -36.27792 -34.38845 -33.02535 -31.95858 -30.03652 -28.42136 -26.15965 -25.44562 -24.52608 -24.10447 -23.12337 -21.54672 -20.11759 -19.50690 -18.72992 -17.85646 -17.25972 -16.63095 -16.48309 -16.14410 -15.66430 -15.48876 -15.15058 -14.67620 -14.43449 -14.28881 -14.02653 -13.73426 -13.64558 -13.26784 -13.00755 -12.94627 -12.83243 -12.73688 -12.63767 -12.46624 -12.36080 -12.27015 -12.04366 -11.95433 -11.78747 -11.58317 -11.36493 -11.24247 -11.24086 -11.21554 -10.85744 -10.61624 -10.32813 -9.33022 -8.17036 -6.29619 1.38473 1.41647 1.49874 1.83485 2.33354 2.47073 2.96838 3.12210 3.68408 3.78617 3.93620 3.96486 4.05107 4.06288 4.20167 4.38281 4.44469 4.46754 4.54207 4.56590 4.61322 4.67041 4.74986 4.78950 4.85166 4.87258 4.92809 4.97375 5.01438 5.03076 5.06072 5.09663 5.14764 5.17294 5.29207 5.32840 5.37251 5.39488 5.43545 5.48436 5.51249 5.65992 5.72382 5.96121 6.15088 6.63033 6.87866 7.35326 7.47830 8.87173 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.010336 B = 0.007848 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2708.254521 B = 3567.051286 C = 5504.674242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C -0.088 4.088 4 C -0.115 4.115 5 C -0.145 4.145 6 C 0.117 3.883 7 N -0.593 5.593 8 C 0.234 3.766 9 C -0.547 4.547 10 H 0.042 0.958 11 C 0.029 3.971 12 N -0.913 5.913 13 Si 0.945 3.055 14 H -0.276 1.276 15 H -0.278 1.278 16 H -0.276 1.276 17 C 0.517 3.483 18 O -0.598 6.598 19 C -0.073 4.073 20 H 0.084 0.916 21 C -0.135 4.135 22 C -0.148 4.148 23 C -0.154 4.154 24 C -0.186 4.186 25 H 0.041 0.959 26 H 0.073 0.927 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.047 0.953 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.057 0.943 38 H 0.040 0.960 39 H 0.049 0.951 40 H 0.267 0.733 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.077 0.923 44 H 0.100 0.900 45 H 0.114 0.886 46 H 0.099 0.901 47 H 0.083 0.917 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.735 1.389 -6.675 8.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C -0.108 4.108 4 C -0.153 4.153 5 C -0.202 4.202 6 C -0.006 4.006 7 N -0.322 5.322 8 C 0.114 3.886 9 C -0.586 4.586 10 H 0.060 0.940 11 C -0.172 4.172 12 N -0.552 5.552 13 Si 0.772 3.228 14 H -0.202 1.202 15 H -0.204 1.204 16 H -0.201 1.201 17 C 0.306 3.694 18 O -0.481 6.481 19 C -0.094 4.094 20 H 0.102 0.898 21 C -0.192 4.192 22 C -0.167 4.167 23 C -0.190 4.190 24 C -0.223 4.223 25 H 0.060 0.940 26 H 0.091 0.909 27 H 0.067 0.933 28 H 0.092 0.908 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.096 0.904 44 H 0.118 0.882 45 H 0.133 0.867 46 H 0.117 0.883 47 H 0.102 0.898 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.883 1.692 -6.873 9.203 hybrid contribution -0.915 0.323 1.066 1.441 sum 4.968 2.015 -5.807 7.903 Atomic orbital electron populations 1.21808 0.95566 1.01328 1.01707 1.21549 0.96482 0.95732 1.01530 1.21434 0.99279 0.95896 0.94181 1.21530 1.01150 0.98915 0.93726 1.21735 1.00648 1.01289 0.96504 1.21512 0.97373 0.96285 0.85390 1.48156 1.18743 1.34379 1.30878 1.19611 0.93262 0.84192 0.91564 1.21693 1.29724 0.93153 1.14020 0.94008 1.25481 0.97261 0.94916 0.99550 1.69979 1.42654 1.02178 1.40355 0.85748 0.79297 0.78122 0.79676 1.20203 1.20358 1.20109 1.20831 0.81277 0.83684 0.83592 1.90522 1.68279 1.28361 1.60966 1.20714 0.95617 0.96171 0.96907 0.89751 1.21822 1.01507 0.93734 1.02157 1.21961 0.98218 1.03576 0.92914 1.23031 0.97996 0.97450 1.00552 1.23059 1.02717 0.98148 0.98395 0.93998 0.90854 0.93314 0.90830 0.93504 0.93072 0.90742 0.92475 0.93382 0.92089 0.91536 0.90778 0.92408 0.94169 0.93386 0.92385 0.92148 0.91888 0.90376 0.88197 0.86744 0.88264 0.89823 0.87911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.37 8.49 71.99 0.61 -3.76 16 2 C -0.12 -3.55 4.85 30.60 0.15 -3.40 16 3 C -0.09 -2.79 2.36 -10.79 -0.03 -2.81 16 4 C -0.12 -2.90 5.12 30.59 0.16 -2.75 16 5 C -0.14 -3.01 9.54 71.98 0.69 -2.33 16 6 C 0.12 4.47 4.77 86.38 0.41 4.88 16 7 N -0.59 -25.35 2.28 -826.14 -1.89 -27.23 16 8 C 0.23 10.93 3.54 85.63 0.30 11.23 16 9 C -0.55 -28.58 8.98 25.60 0.23 -28.35 16 10 H 0.04 2.28 7.81 -2.91 -0.02 2.26 16 11 C 0.03 1.50 5.46 84.65 0.46 1.96 16 12 N -0.91 -49.09 13.29 21.45 0.28 -48.81 16 13 Si 0.95 41.98 29.54 68.60 2.03 44.00 16 14 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 15 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 16 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 17 C 0.52 22.38 6.95 87.66 0.61 22.99 16 18 O -0.60 -28.06 15.17 -3.02 -0.05 -28.11 16 19 C -0.07 -2.77 2.07 -11.54 -0.02 -2.80 16 20 H 0.08 3.59 7.21 -2.39 -0.02 3.57 16 21 C -0.14 -4.51 8.46 71.98 0.61 -3.90 16 22 C -0.15 -4.89 4.80 -10.79 -0.05 -4.95 16 23 C -0.15 -3.93 9.84 30.61 0.30 -3.63 16 24 C -0.19 -5.49 10.18 30.61 0.31 -5.18 16 25 H 0.04 1.44 5.70 -2.39 -0.01 1.42 16 26 H 0.07 1.79 6.57 -2.39 -0.02 1.77 16 27 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.07 1.95 6.88 -2.38 -0.02 1.93 16 29 H 0.05 1.69 5.64 -2.39 -0.01 1.68 16 30 H 0.05 1.77 8.14 -2.39 -0.02 1.76 16 31 H 0.07 1.76 6.19 -2.39 -0.01 1.74 16 32 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 1.21 6.94 -2.39 -0.02 1.19 16 35 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.07 2.85 6.11 -2.39 -0.01 2.83 16 37 H 0.06 2.30 7.36 -2.38 -0.02 2.29 16 38 H 0.04 1.94 5.02 -2.39 -0.01 1.93 16 39 H 0.05 2.30 4.18 -2.38 -0.01 2.29 16 40 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 41 H 0.06 2.23 5.30 -2.39 -0.01 2.22 16 42 H 0.06 1.92 8.12 -2.39 -0.02 1.90 16 43 H 0.08 2.29 7.65 -2.39 -0.02 2.28 16 44 H 0.10 3.53 7.38 -2.39 -0.02 3.51 16 45 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 46 H 0.10 2.45 7.74 -2.39 -0.02 2.43 16 47 H 0.08 2.63 8.05 -2.39 -0.02 2.61 16 48 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -58.64 362.17 6.04 -52.60 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: 0.92 Total: 30.33 kcal Atomic # 6 Polarization: -27.52 SS G_CDS: 4.74 Total: -22.78 kcal Atomic # 7 Polarization: -74.44 SS G_CDS: -1.60 Total: -76.04 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -0.05 Total: -28.11 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.00 kcal Total: -58.64 6.04 -52.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175312640.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.404 kcal (2) G-P(sol) polarization free energy of solvation -58.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds