Wall clock time and date at job start Tue Mar 31 2020 06:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47024 * 2 1 4 4 C 1.52999 * 109.47492 * 304.32460 * 3 2 1 5 5 C 1.53007 * 109.46805 * 294.59228 * 4 3 2 6 6 C 1.53007 * 109.47200 * 64.32203 * 3 2 1 7 7 N 1.46500 * 109.47139 * 64.99873 * 6 3 2 8 8 C 1.46504 * 119.99917 * 270.00179 * 7 6 3 9 9 C 1.50696 * 109.47066 * 264.43870 * 8 7 6 10 10 H 1.07998 * 120.00378 * 359.97438 * 9 8 7 11 11 C 1.37876 * 119.99927 * 180.02562 * 9 8 7 12 12 N 1.31518 * 120.00109 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 120.00163 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46582 * 59.99832 * 13 11 9 15 15 H 1.48497 * 109.47097 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47072 * 299.99960 * 13 11 9 17 17 C 1.34775 * 120.00244 * 89.99909 * 7 6 3 18 18 O 1.21279 * 119.99699 * 4.85283 * 17 7 6 19 19 C 1.50699 * 120.00428 * 184.85444 * 17 7 6 20 20 H 1.09006 * 109.46699 * 334.72906 * 19 17 7 21 21 C 1.52993 * 109.47258 * 214.72971 * 19 17 7 22 22 C 1.53003 * 109.47082 * 94.72490 * 19 17 7 23 23 C 1.52997 * 117.49477 * 180.02562 * 22 19 17 24 24 C 1.52997 * 60.03395 * 107.47962 * 23 22 19 25 25 H 1.09001 * 109.47665 * 305.30043 * 1 2 3 26 26 H 1.09006 * 109.46926 * 65.30439 * 1 2 3 27 27 H 1.09000 * 109.47273 * 185.30191 * 1 2 3 28 28 H 1.08996 * 109.47394 * 240.00083 * 2 1 3 29 29 H 1.08994 * 109.46797 * 120.00145 * 2 1 3 30 30 H 1.08997 * 109.46966 * 184.31980 * 3 2 1 31 31 H 1.08994 * 109.47184 * 54.58771 * 4 3 2 32 32 H 1.08996 * 109.47589 * 174.59473 * 4 3 2 33 33 H 1.08994 * 109.47076 * 185.32427 * 5 4 3 34 34 H 1.09003 * 109.46999 * 305.32570 * 5 4 3 35 35 H 1.09000 * 109.46950 * 65.31670 * 5 4 3 36 36 H 1.09001 * 109.46959 * 305.00315 * 6 3 2 37 37 H 1.08993 * 109.47142 * 185.00081 * 6 3 2 38 38 H 1.09000 * 109.47316 * 24.44350 * 8 7 6 39 39 H 1.09002 * 109.47029 * 144.43438 * 8 7 6 40 40 H 0.96998 * 120.00275 * 179.97438 * 12 11 9 41 41 H 1.08997 * 109.47082 * 294.86845 * 21 19 17 42 42 H 1.09004 * 109.47433 * 54.86779 * 21 19 17 43 43 H 1.09003 * 109.47118 * 174.87100 * 21 19 17 44 44 H 1.08996 * 115.56029 * 34.31744 * 22 19 17 45 45 H 1.09003 * 117.49528 * 214.98434 * 23 22 19 46 46 H 1.09006 * 117.50289 * 359.97438 * 23 22 19 47 47 H 1.08998 * 117.49908 * 107.49727 * 24 23 22 48 48 H 1.09007 * 117.49603 * 252.52172 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4431 2.1945 -1.1913 5 6 1.9705 1.5881 -2.4933 6 6 1.6206 2.1317 1.3001 7 7 2.2875 1.4849 2.4328 8 6 1.6474 0.3557 3.1123 9 6 0.8963 0.8560 4.3192 10 1 0.8962 1.9095 4.5567 11 6 0.2102 -0.0314 5.1208 12 7 0.2108 -1.3145 4.8319 13 14 -0.7202 0.5885 6.6173 14 1 -1.7579 1.5600 6.1874 15 1 -1.3691 -0.5560 7.3059 16 1 0.2263 1.2546 7.5477 17 6 3.4899 1.9284 2.8498 18 8 3.9797 2.9168 2.3458 19 6 4.2258 1.1963 3.9423 20 1 3.5107 0.6571 4.5637 21 6 4.9928 2.2020 4.8032 22 6 5.2093 0.2042 3.3185 23 6 6.0574 -0.6424 4.2697 24 6 4.9113 -1.2877 3.4881 25 1 -0.3634 0.5938 0.8387 26 1 -0.3633 0.4294 -0.9337 27 1 -0.3634 -1.0233 0.0950 28 1 1.8934 -0.5138 -0.8899 29 1 1.8932 -0.5138 0.8899 30 1 3.1272 1.4434 -0.0774 31 1 0.3566 2.1117 -1.1658 32 1 1.7288 3.2450 -1.1380 33 1 1.6212 2.1816 -3.3381 34 1 3.0604 1.5849 -2.4773 35 1 1.6057 0.5657 -2.5918 36 1 0.5403 2.0526 1.4211 37 1 1.9061 3.1829 1.2624 38 1 0.9529 -0.1332 2.4290 39 1 2.4089 -0.3574 3.4280 40 1 -0.2716 -1.9389 5.3961 41 1 5.7692 2.6763 4.2030 42 1 4.3050 2.9622 5.1738 43 1 5.4505 1.6842 5.6460 44 1 5.6685 0.5226 2.3827 45 1 7.0749 -0.8808 3.9598 46 1 5.9150 -0.4923 5.3400 47 1 5.1748 -1.9506 2.6639 48 1 4.0146 -1.5617 4.0440 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175312657.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:32 Heat of formation + Delta-G solvation = -43.768316 kcal Electronic energy + Delta-G solvation = -24186.694444 eV Core-core repulsion = 21048.388303 eV Total energy + Delta-G solvation = -3138.306141 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.59834 -37.56205 -36.50355 -34.46475 -32.46460 -31.41249 -30.79401 -28.63792 -26.71501 -24.93333 -23.71047 -22.84370 -22.78543 -21.88397 -20.28020 -18.73349 -17.92090 -16.78610 -16.37547 -15.51454 -15.22702 -14.82559 -14.61669 -14.43610 -14.10367 -13.59993 -13.03703 -12.87353 -12.66836 -12.61636 -12.36164 -12.24929 -11.76542 -11.61682 -11.50241 -11.41491 -11.31362 -11.14986 -11.03012 -10.92343 -10.81105 -10.70899 -10.33707 -10.19406 -10.12048 -10.06004 -10.01095 -9.84864 -9.64880 -9.54751 -8.79035 -8.49959 -7.58597 -6.16883 -4.23877 3.24061 3.29113 3.31815 3.48317 4.00583 4.19448 4.35103 5.05644 5.15606 5.16596 5.20444 5.28021 5.30022 5.31615 5.49830 5.56187 5.65731 5.72269 5.85288 5.92580 5.93976 5.96865 6.00699 6.02158 6.07909 6.14463 6.17466 6.20876 6.28699 6.30277 6.41448 6.43203 6.48022 6.56992 6.59119 6.61715 6.65766 6.73450 6.80650 6.86877 6.98294 7.28685 7.64039 7.80231 8.10675 8.43314 8.83092 9.14086 9.44029 10.88878 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.010910 B = 0.007682 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.771420 B = 3644.224702 C = 5018.058465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.099 4.099 4 C -0.119 4.119 5 C -0.148 4.148 6 C 0.120 3.880 7 N -0.591 5.591 8 C 0.230 3.770 9 C -0.539 4.539 10 H 0.058 0.942 11 C 0.067 3.933 12 N -0.890 5.890 13 Si 0.892 3.108 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.276 1.276 17 C 0.527 3.473 18 O -0.579 6.579 19 C -0.086 4.086 20 H 0.113 0.887 21 C -0.124 4.124 22 C -0.135 4.135 23 C -0.178 4.178 24 C -0.175 4.175 25 H 0.064 0.936 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.047 0.953 34 H 0.050 0.950 35 H 0.054 0.946 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.047 0.953 39 H 0.041 0.959 40 H 0.265 0.735 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.099 0.901 45 H 0.088 0.912 46 H 0.094 0.906 47 H 0.088 0.912 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.936 0.587 -6.859 8.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.118 4.118 4 C -0.157 4.157 5 C -0.206 4.206 6 C -0.003 4.003 7 N -0.320 5.320 8 C 0.110 3.890 9 C -0.578 4.578 10 H 0.076 0.924 11 C -0.136 4.136 12 N -0.528 5.528 13 Si 0.720 3.280 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.201 1.201 17 C 0.316 3.684 18 O -0.460 6.460 19 C -0.107 4.107 20 H 0.131 0.869 21 C -0.182 4.182 22 C -0.153 4.153 23 C -0.215 4.215 24 C -0.212 4.212 25 H 0.083 0.917 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.117 0.883 45 H 0.107 0.893 46 H 0.112 0.888 47 H 0.107 0.893 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.077 0.891 -7.052 8.735 hybrid contribution -0.689 0.144 0.899 1.142 sum 4.388 1.035 -6.152 7.627 Atomic orbital electron populations 1.21869 0.96072 1.01648 1.01409 1.21606 0.96133 0.96163 1.01919 1.21548 1.00160 0.95580 0.94547 1.21555 1.00787 0.99249 0.94147 1.21764 1.00918 1.00827 0.97061 1.21379 0.97489 0.96647 0.84824 1.48174 1.18304 1.34536 1.31007 1.19627 0.93559 0.83584 0.92188 1.21524 1.31804 0.94333 1.10089 0.92365 1.24899 0.96188 0.94752 0.97762 1.69906 1.42359 1.01629 1.38889 0.86643 0.80199 0.78348 0.82827 1.20211 1.21165 1.20112 1.20360 0.81298 0.83844 0.82946 1.90556 1.68541 1.27318 1.59599 1.20919 0.96883 0.96581 0.96270 0.86878 1.21524 0.99984 0.98177 0.98516 1.21987 1.01123 0.91901 1.00315 1.22900 0.95692 1.04816 0.98087 1.23120 1.00375 0.94894 1.02816 0.91688 0.93355 0.93167 0.93002 0.90709 0.91590 0.91534 0.92343 0.93351 0.93057 0.92658 0.90490 0.91305 0.93503 0.94159 0.92546 0.92383 0.92737 0.92630 0.88334 0.89336 0.88788 0.89327 0.87507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 8.51 37.16 0.32 -2.01 16 2 C -0.12 -1.90 4.84 -26.73 -0.13 -2.03 16 3 C -0.10 -1.57 2.37 -90.62 -0.21 -1.79 16 4 C -0.12 -1.59 5.10 -26.73 -0.14 -1.73 16 5 C -0.15 -1.73 9.54 37.16 0.35 -1.38 16 6 C 0.12 2.24 4.77 -4.04 -0.02 2.22 16 7 N -0.59 -12.35 2.29 -175.06 -0.40 -12.75 16 8 C 0.23 5.26 3.66 -5.19 -0.02 5.24 16 9 C -0.54 -13.76 8.75 -34.44 -0.30 -14.06 16 10 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 11 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16 12 N -0.89 -23.74 13.29 55.43 0.74 -23.00 16 13 Si 0.89 20.40 29.54 -169.99 -5.02 15.38 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 15 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 C 0.53 11.20 6.60 -10.99 -0.07 11.13 16 18 O -0.58 -13.38 15.92 5.56 0.09 -13.29 16 19 C -0.09 -1.62 2.15 -91.77 -0.20 -1.82 16 20 H 0.11 2.38 5.55 -51.93 -0.29 2.09 16 21 C -0.12 -2.13 8.53 37.15 0.32 -1.81 16 22 C -0.13 -2.22 5.13 -90.58 -0.46 -2.69 16 23 C -0.18 -2.49 9.79 -26.73 -0.26 -2.76 16 24 C -0.18 -2.74 9.59 -26.69 -0.26 -2.99 16 25 H 0.06 1.11 5.72 -51.93 -0.30 0.81 16 26 H 0.05 0.64 6.55 -51.93 -0.34 0.30 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.74 6.91 -51.93 -0.36 0.38 16 29 H 0.07 1.36 5.62 -51.93 -0.29 1.06 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.07 0.85 6.17 -51.93 -0.32 0.53 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.63 6.94 -51.93 -0.36 0.27 16 36 H 0.08 1.43 6.15 -51.93 -0.32 1.11 16 37 H 0.07 1.33 7.36 -51.93 -0.38 0.95 16 38 H 0.05 1.11 5.15 -51.93 -0.27 0.84 16 39 H 0.04 0.95 4.98 -51.93 -0.26 0.69 16 40 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 41 H 0.06 0.98 8.02 -51.93 -0.42 0.56 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.05 0.82 7.48 -51.93 -0.39 0.43 16 44 H 0.10 1.66 8.11 -51.93 -0.42 1.23 16 45 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.09 1.29 7.66 -51.93 -0.40 0.89 16 47 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 48 H 0.11 1.89 7.16 -51.92 -0.37 1.52 16 LS Contribution 363.94 15.07 5.48 5.48 Total: -1.00 -27.24 363.94 -8.70 -35.94 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -8.41 Total: 7.07 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: -1.18 Total: -14.84 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: 0.33 Total: -35.75 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.09 Total: -13.29 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -27.24 -8.70 -35.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175312657.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.826 kcal (2) G-P(sol) polarization free energy of solvation -27.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds