Wall clock time and date at job start Tue Mar 31 2020 06:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47024 * 2 1 4 4 C 1.52999 * 109.47492 * 304.32460 * 3 2 1 5 5 C 1.53007 * 109.46805 * 294.59228 * 4 3 2 6 6 C 1.53007 * 109.47200 * 64.32203 * 3 2 1 7 7 N 1.46500 * 109.47139 * 64.99873 * 6 3 2 8 8 C 1.46504 * 119.99917 * 270.00179 * 7 6 3 9 9 C 1.50696 * 109.47066 * 264.43870 * 8 7 6 10 10 H 1.07998 * 120.00378 * 359.97438 * 9 8 7 11 11 C 1.37876 * 119.99927 * 180.02562 * 9 8 7 12 12 N 1.31518 * 120.00109 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 120.00163 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46582 * 59.99832 * 13 11 9 15 15 H 1.48497 * 109.47097 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47072 * 299.99960 * 13 11 9 17 17 C 1.34775 * 120.00244 * 89.99909 * 7 6 3 18 18 O 1.21279 * 119.99699 * 4.85283 * 17 7 6 19 19 C 1.50699 * 120.00428 * 184.85444 * 17 7 6 20 20 H 1.09006 * 109.46699 * 334.72906 * 19 17 7 21 21 C 1.52993 * 109.47258 * 214.72971 * 19 17 7 22 22 C 1.53003 * 109.47082 * 94.72490 * 19 17 7 23 23 C 1.52997 * 117.49477 * 180.02562 * 22 19 17 24 24 C 1.52997 * 60.03395 * 107.47962 * 23 22 19 25 25 H 1.09001 * 109.47665 * 305.30043 * 1 2 3 26 26 H 1.09006 * 109.46926 * 65.30439 * 1 2 3 27 27 H 1.09000 * 109.47273 * 185.30191 * 1 2 3 28 28 H 1.08996 * 109.47394 * 240.00083 * 2 1 3 29 29 H 1.08994 * 109.46797 * 120.00145 * 2 1 3 30 30 H 1.08997 * 109.46966 * 184.31980 * 3 2 1 31 31 H 1.08994 * 109.47184 * 54.58771 * 4 3 2 32 32 H 1.08996 * 109.47589 * 174.59473 * 4 3 2 33 33 H 1.08994 * 109.47076 * 185.32427 * 5 4 3 34 34 H 1.09003 * 109.46999 * 305.32570 * 5 4 3 35 35 H 1.09000 * 109.46950 * 65.31670 * 5 4 3 36 36 H 1.09001 * 109.46959 * 305.00315 * 6 3 2 37 37 H 1.08993 * 109.47142 * 185.00081 * 6 3 2 38 38 H 1.09000 * 109.47316 * 24.44350 * 8 7 6 39 39 H 1.09002 * 109.47029 * 144.43438 * 8 7 6 40 40 H 0.96998 * 120.00275 * 179.97438 * 12 11 9 41 41 H 1.08997 * 109.47082 * 294.86845 * 21 19 17 42 42 H 1.09004 * 109.47433 * 54.86779 * 21 19 17 43 43 H 1.09003 * 109.47118 * 174.87100 * 21 19 17 44 44 H 1.08996 * 115.56029 * 34.31744 * 22 19 17 45 45 H 1.09003 * 117.49528 * 214.98434 * 23 22 19 46 46 H 1.09006 * 117.50289 * 359.97438 * 23 22 19 47 47 H 1.08998 * 117.49908 * 107.49727 * 24 23 22 48 48 H 1.09007 * 117.49603 * 252.52172 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4431 2.1945 -1.1913 5 6 1.9705 1.5881 -2.4933 6 6 1.6206 2.1317 1.3001 7 7 2.2875 1.4849 2.4328 8 6 1.6474 0.3557 3.1123 9 6 0.8963 0.8560 4.3192 10 1 0.8962 1.9095 4.5567 11 6 0.2102 -0.0314 5.1208 12 7 0.2108 -1.3145 4.8319 13 14 -0.7202 0.5885 6.6173 14 1 -1.7579 1.5600 6.1874 15 1 -1.3691 -0.5560 7.3059 16 1 0.2263 1.2546 7.5477 17 6 3.4899 1.9284 2.8498 18 8 3.9797 2.9168 2.3458 19 6 4.2258 1.1963 3.9423 20 1 3.5107 0.6571 4.5637 21 6 4.9928 2.2020 4.8032 22 6 5.2093 0.2042 3.3185 23 6 6.0574 -0.6424 4.2697 24 6 4.9113 -1.2877 3.4881 25 1 -0.3634 0.5938 0.8387 26 1 -0.3633 0.4294 -0.9337 27 1 -0.3634 -1.0233 0.0950 28 1 1.8934 -0.5138 -0.8899 29 1 1.8932 -0.5138 0.8899 30 1 3.1272 1.4434 -0.0774 31 1 0.3566 2.1117 -1.1658 32 1 1.7288 3.2450 -1.1380 33 1 1.6212 2.1816 -3.3381 34 1 3.0604 1.5849 -2.4773 35 1 1.6057 0.5657 -2.5918 36 1 0.5403 2.0526 1.4211 37 1 1.9061 3.1829 1.2624 38 1 0.9529 -0.1332 2.4290 39 1 2.4089 -0.3574 3.4280 40 1 -0.2716 -1.9389 5.3961 41 1 5.7692 2.6763 4.2030 42 1 4.3050 2.9622 5.1738 43 1 5.4505 1.6842 5.6460 44 1 5.6685 0.5226 2.3827 45 1 7.0749 -0.8808 3.9598 46 1 5.9150 -0.4923 5.3400 47 1 5.1748 -1.9506 2.6639 48 1 4.0146 -1.5617 4.0440 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175312657.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:31 Heat of formation + Delta-G solvation = -55.463895 kcal Electronic energy + Delta-G solvation = -24187.201602 eV Core-core repulsion = 21048.388303 eV Total energy + Delta-G solvation = -3138.813299 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.21996 -38.89739 -37.93598 -36.17629 -34.37670 -32.84628 -31.96577 -30.20676 -28.47438 -26.31972 -25.23133 -24.56396 -23.99804 -23.11050 -21.67728 -20.06737 -19.52284 -18.67681 -18.08356 -17.09928 -16.57678 -16.46998 -16.19737 -15.80422 -15.56668 -14.96698 -14.51371 -14.31394 -14.19665 -14.04367 -13.82454 -13.64044 -13.30438 -13.09638 -12.99851 -12.77851 -12.75524 -12.63810 -12.56760 -12.39847 -12.20492 -12.06401 -11.98873 -11.69931 -11.66939 -11.41570 -11.38112 -11.24381 -11.21894 -10.86299 -10.61114 -10.34333 -9.33949 -8.17165 -6.30979 1.40469 1.41850 1.48818 1.79900 2.33410 2.48728 2.92873 3.12051 3.68382 3.84980 3.94159 3.95996 4.02232 4.04870 4.18146 4.36892 4.43559 4.48816 4.51284 4.54055 4.59956 4.65018 4.73826 4.80878 4.85345 4.89809 4.91996 4.98008 5.00770 5.05242 5.08436 5.11484 5.13995 5.21921 5.27523 5.32500 5.35066 5.36086 5.41243 5.42777 5.50048 5.64770 5.70940 5.95507 6.13703 6.61299 6.87041 7.34859 7.47218 8.86769 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.010910 B = 0.007682 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.771420 B = 3644.224702 C = 5018.058465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C -0.088 4.088 4 C -0.115 4.115 5 C -0.144 4.144 6 C 0.116 3.884 7 N -0.593 5.593 8 C 0.249 3.751 9 C -0.550 4.550 10 H 0.043 0.957 11 C 0.029 3.971 12 N -0.911 5.911 13 Si 0.946 3.054 14 H -0.276 1.276 15 H -0.279 1.279 16 H -0.273 1.273 17 C 0.520 3.480 18 O -0.601 6.601 19 C -0.082 4.082 20 H 0.088 0.912 21 C -0.119 4.119 22 C -0.149 4.149 23 C -0.149 4.149 24 C -0.180 4.180 25 H 0.041 0.959 26 H 0.074 0.926 27 H 0.048 0.952 28 H 0.072 0.928 29 H 0.045 0.955 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.047 0.953 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.039 0.961 39 H 0.033 0.967 40 H 0.267 0.733 41 H 0.060 0.940 42 H 0.039 0.961 43 H 0.081 0.919 44 H 0.097 0.903 45 H 0.117 0.883 46 H 0.099 0.901 47 H 0.104 0.896 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.433 0.295 -7.354 9.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C -0.107 4.107 4 C -0.153 4.153 5 C -0.202 4.202 6 C -0.007 4.007 7 N -0.321 5.321 8 C 0.129 3.871 9 C -0.589 4.589 10 H 0.061 0.939 11 C -0.172 4.172 12 N -0.550 5.550 13 Si 0.772 3.228 14 H -0.201 1.201 15 H -0.204 1.204 16 H -0.199 1.199 17 C 0.309 3.691 18 O -0.484 6.484 19 C -0.103 4.103 20 H 0.107 0.893 21 C -0.177 4.177 22 C -0.168 4.168 23 C -0.186 4.186 24 C -0.217 4.217 25 H 0.060 0.940 26 H 0.092 0.908 27 H 0.067 0.933 28 H 0.091 0.909 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.050 0.950 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.059 0.941 43 H 0.100 0.900 44 H 0.115 0.885 45 H 0.135 0.865 46 H 0.117 0.883 47 H 0.122 0.878 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.569 0.600 -7.553 9.403 hybrid contribution -0.857 0.249 1.039 1.370 sum 4.713 0.849 -6.513 8.084 Atomic orbital electron populations 1.21809 0.95491 1.01345 1.01741 1.21533 0.96529 0.95736 1.01472 1.21427 0.99215 0.95903 0.94188 1.21535 1.01154 0.98901 0.93734 1.21735 1.00678 1.01310 0.96450 1.21525 0.97222 0.96301 0.85606 1.48199 1.18379 1.34073 1.31474 1.19280 0.92824 0.83777 0.91244 1.21675 1.32349 0.93633 1.11223 0.93867 1.25499 0.96827 0.94889 0.99952 1.69982 1.42905 1.02348 1.39783 0.85797 0.79041 0.77974 0.80021 1.20134 1.20428 1.19874 1.20842 0.81310 0.83667 0.83276 1.90529 1.69016 1.28260 1.60621 1.20874 0.96959 0.97115 0.95398 0.89334 1.21513 0.99516 0.97620 0.99043 1.21885 1.01948 0.91732 1.01223 1.23026 0.96324 1.01411 0.97829 1.23057 1.00462 0.94477 1.03679 0.94000 0.90764 0.93293 0.90923 0.93607 0.93215 0.90669 0.92431 0.91479 0.93429 0.92112 0.90747 0.92300 0.94302 0.94958 0.92368 0.92124 0.94139 0.90050 0.88527 0.86452 0.88277 0.87758 0.90139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.37 8.51 71.98 0.61 -3.76 16 2 C -0.12 -3.59 4.84 30.59 0.15 -3.44 16 3 C -0.09 -2.80 2.37 -10.79 -0.03 -2.82 16 4 C -0.12 -2.92 5.10 30.60 0.16 -2.76 16 5 C -0.14 -3.03 9.54 71.98 0.69 -2.35 16 6 C 0.12 4.46 4.77 86.38 0.41 4.87 16 7 N -0.59 -25.66 2.29 -826.15 -1.89 -27.55 16 8 C 0.25 11.80 3.66 85.63 0.31 12.12 16 9 C -0.55 -28.81 8.75 25.60 0.22 -28.59 16 10 H 0.04 2.35 7.81 -2.91 -0.02 2.33 16 11 C 0.03 1.53 5.46 84.65 0.46 1.99 16 12 N -0.91 -49.13 13.29 21.45 0.28 -48.84 16 13 Si 0.95 41.90 29.54 68.60 2.03 43.92 16 14 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 15 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 16 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 17 C 0.52 22.71 6.60 87.66 0.58 23.29 16 18 O -0.60 -28.39 15.92 -3.03 -0.05 -28.44 16 19 C -0.08 -3.16 2.15 -11.54 -0.02 -3.19 16 20 H 0.09 3.85 5.55 -2.38 -0.01 3.83 16 21 C -0.12 -4.05 8.53 71.98 0.61 -3.43 16 22 C -0.15 -4.86 5.13 -10.77 -0.06 -4.91 16 23 C -0.15 -3.85 9.79 30.59 0.30 -3.55 16 24 C -0.18 -5.53 9.59 30.62 0.29 -5.23 16 25 H 0.04 1.43 5.72 -2.39 -0.01 1.42 16 26 H 0.07 1.80 6.55 -2.38 -0.02 1.79 16 27 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.07 1.96 6.91 -2.39 -0.02 1.94 16 29 H 0.05 1.69 5.62 -2.39 -0.01 1.68 16 30 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.07 1.78 6.17 -2.39 -0.01 1.76 16 32 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.06 1.21 6.94 -2.39 -0.02 1.20 16 36 H 0.07 2.86 6.15 -2.39 -0.01 2.85 16 37 H 0.06 2.35 7.36 -2.39 -0.02 2.33 16 38 H 0.04 1.91 5.15 -2.39 -0.01 1.89 16 39 H 0.03 1.59 4.98 -2.39 -0.01 1.58 16 40 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 41 H 0.06 2.01 8.02 -2.39 -0.02 1.99 16 42 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.08 2.29 7.48 -2.39 -0.02 2.27 16 44 H 0.10 3.20 8.11 -2.39 -0.02 3.18 16 45 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 46 H 0.10 2.48 7.66 -2.38 -0.02 2.46 16 47 H 0.10 2.83 8.14 -2.39 -0.02 2.82 16 48 H 0.08 2.92 7.16 -2.38 -0.02 2.91 16 Total: -1.00 -58.83 363.94 5.98 -52.84 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: 0.92 Total: 29.84 kcal Atomic # 6 Polarization: -26.47 SS G_CDS: 4.70 Total: -21.77 kcal Atomic # 7 Polarization: -74.78 SS G_CDS: -1.61 Total: -76.39 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: -0.05 Total: -28.44 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.92 kcal Total: -58.83 5.98 -52.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175312657.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.621 kcal (2) G-P(sol) polarization free energy of solvation -58.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds