Wall clock time and date at job start Tue Mar 31 2020 05:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 120.00457 * 2 1 4 4 H 1.48496 * 109.47260 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47053 * 300.00067 * 3 2 1 6 6 H 1.48501 * 109.47055 * 59.99737 * 3 2 1 7 7 C 1.37879 * 119.99648 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99971 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99975 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46784 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.46765 * 180.02562 * 10 9 7 12 12 C 1.46849 * 110.99843 * 190.00046 * 11 10 9 13 13 C 1.53040 * 109.52352 * 185.83746 * 12 11 10 14 14 C 1.53117 * 109.27854 * 300.82314 * 13 12 11 15 15 O 1.42902 * 109.52344 * 177.55806 * 14 13 12 16 16 C 1.42898 * 114.00186 * 150.12310 * 15 14 13 17 17 C 1.52997 * 109.47319 * 180.02562 * 16 15 14 18 18 C 1.54267 * 110.03373 * 292.91285 * 17 16 15 19 19 C 1.54968 * 104.16137 * 217.13581 * 18 17 16 20 20 C 1.54884 * 102.77441 * 37.88396 * 19 18 17 21 21 C 1.53874 * 110.03593 * 175.69205 * 17 16 15 22 22 C 1.53118 * 109.21658 * 57.62137 * 14 13 12 23 23 C 1.46848 * 110.99959 * 314.20975 * 11 10 9 24 24 H 0.97000 * 119.99184 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46731 * 60.00539 * 9 7 2 26 26 H 1.09003 * 109.47222 * 300.00179 * 9 7 2 27 27 H 1.09001 * 109.47155 * 60.00666 * 10 9 7 28 28 H 1.09003 * 109.47278 * 300.00011 * 10 9 7 29 29 H 1.08996 * 109.46582 * 65.82594 * 12 11 10 30 30 H 1.08999 * 109.45929 * 305.84638 * 12 11 10 31 31 H 1.09001 * 109.50564 * 180.87821 * 13 12 11 32 32 H 1.09002 * 109.50510 * 60.76473 * 13 12 11 33 33 H 1.08996 * 109.52358 * 297.67949 * 14 13 12 34 34 H 1.09002 * 109.47259 * 300.00293 * 16 15 14 35 35 H 1.09001 * 109.47074 * 60.00315 * 16 15 14 36 36 H 1.09004 * 110.01939 * 54.29674 * 17 16 15 37 37 H 1.09001 * 110.48609 * 335.77840 * 18 17 16 38 38 H 1.08999 * 110.49311 * 98.42344 * 18 17 16 39 39 H 1.08997 * 110.72048 * 279.57487 * 19 18 17 40 40 H 1.08993 * 110.92252 * 156.29196 * 19 18 17 41 41 H 1.09009 * 110.48779 * 203.40596 * 20 19 18 42 42 H 1.09001 * 110.59973 * 80.82109 * 20 19 18 43 43 H 1.09003 * 110.03243 * 238.56963 * 21 17 16 44 44 H 1.08996 * 110.02723 * 359.95243 * 21 17 16 45 45 H 1.09008 * 109.50062 * 62.31414 * 22 14 13 46 46 H 1.08992 * 109.50691 * 182.43635 * 22 14 13 47 47 H 1.09003 * 109.46370 * 294.17138 * 23 11 10 48 48 H 1.08991 * 109.46436 * 54.16112 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 -0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 7 1.5106 -4.9343 -0.0012 12 6 2.4165 -6.0652 0.2369 13 6 1.6458 -7.3786 0.0854 14 6 0.4906 -7.4056 1.0900 15 8 -0.2669 -8.6046 0.9146 16 6 -0.8871 -9.0806 2.1108 17 6 -1.6661 -10.3617 1.8064 18 6 -2.8634 -10.0461 0.8862 19 6 -3.9895 -10.9813 1.3950 20 6 -3.7828 -10.9627 2.9298 21 6 -2.2502 -10.9447 3.1051 22 6 -0.4115 -6.1913 0.8534 23 6 0.4192 -4.9122 0.9812 24 1 -0.4849 0.8401 -0.0004 25 1 0.6240 -2.5567 -0.8904 26 1 0.6246 -2.5571 0.8897 27 1 2.8717 -3.6045 0.8895 28 1 2.8718 -3.6044 -0.8905 29 1 2.8244 -5.9978 1.2454 30 1 3.2310 -6.0366 -0.4869 31 1 2.3148 -8.2174 0.2775 32 1 1.2493 -7.4532 -0.9272 33 1 0.8888 -7.3716 2.1041 34 1 -0.1218 -9.2901 2.8582 35 1 -1.5700 -8.3218 2.4927 36 1 -1.0119 -11.0921 1.3304 37 1 -3.1591 -9.0021 0.9895 38 1 -2.6176 -10.2731 -0.1512 39 1 -3.8615 -11.9892 1.0002 40 1 -4.9711 -10.5871 1.1326 41 1 -4.2080 -11.8583 3.3830 42 1 -4.2272 -10.0679 3.3658 43 1 -1.8800 -11.9583 3.2590 44 1 -1.9779 -10.3153 3.9524 45 1 -0.8413 -6.2466 -0.1468 46 1 -1.2113 -6.1823 1.5938 47 1 0.8365 -4.8503 1.9863 48 1 -0.2169 -4.0464 0.7979 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177497443.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:45 Heat of formation + Delta-G solvation = -76.509995 kcal Electronic energy + Delta-G solvation = -22386.379292 eV Core-core repulsion = 19246.653366 eV Total energy + Delta-G solvation = -3139.725926 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.44369 -38.44699 -36.77409 -33.65368 -32.15098 -30.65765 -30.29447 -28.92843 -28.60012 -25.05085 -24.30033 -23.24217 -22.42050 -20.90279 -20.31026 -19.80231 -19.32705 -17.01797 -16.54203 -15.88761 -15.62849 -15.26676 -14.76592 -14.62843 -14.42537 -14.00048 -13.94296 -13.57084 -13.29110 -12.94640 -12.71716 -12.35221 -12.12242 -11.75872 -11.53620 -11.37982 -11.29904 -11.22308 -11.14059 -11.02701 -10.92863 -10.86141 -10.79245 -10.59025 -10.54709 -10.42523 -10.24157 -9.93192 -9.43977 -9.25992 -9.01544 -8.34948 -7.68812 -6.01120 -4.03254 3.30573 3.38055 3.42112 3.58002 4.36890 4.38880 4.39166 4.53601 4.57004 4.92552 4.98545 5.07369 5.15513 5.21140 5.26664 5.29309 5.35067 5.36625 5.41742 5.47677 5.51788 5.55886 5.63013 5.65189 5.74092 5.79270 5.82248 5.86327 5.94832 6.02135 6.06559 6.09623 6.13737 6.21148 6.30469 6.33929 6.39313 6.55919 6.61709 6.93088 7.30641 7.51719 7.62018 7.79360 7.85487 8.04559 8.42384 9.03599 9.60526 11.10320 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.030696 B = 0.002731 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.955631 B =10251.037654 C =10829.800570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.020 3.980 10 C 0.062 3.938 11 N -0.540 5.540 12 C 0.058 3.942 13 C -0.109 4.109 14 C 0.091 3.909 15 O -0.380 6.380 16 C 0.069 3.931 17 C -0.091 4.091 18 C -0.113 4.113 19 C -0.128 4.128 20 C -0.125 4.125 21 C -0.119 4.119 22 C -0.135 4.135 23 C 0.054 3.946 24 H 0.260 0.740 25 H 0.025 0.975 26 H 0.020 0.980 27 H 0.019 0.981 28 H 0.063 0.937 29 H 0.026 0.974 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.052 0.948 34 H 0.043 0.957 35 H 0.048 0.952 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.078 0.922 46 H 0.061 0.939 47 H 0.025 0.975 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.244 -22.576 5.481 23.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.064 4.064 11 N -0.265 5.265 12 C -0.071 4.071 13 C -0.147 4.147 14 C 0.034 3.966 15 O -0.300 6.300 16 C -0.008 4.008 17 C -0.109 4.109 18 C -0.151 4.151 19 C -0.165 4.165 20 C -0.163 4.163 21 C -0.157 4.157 22 C -0.173 4.173 23 C -0.074 4.074 24 H 0.070 0.930 25 H 0.044 0.956 26 H 0.038 0.962 27 H 0.037 0.963 28 H 0.082 0.918 29 H 0.044 0.956 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.097 0.903 46 H 0.079 0.921 47 H 0.043 0.957 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.602 -22.610 4.845 23.577 hybrid contribution 0.872 1.247 1.136 1.899 sum -3.730 -21.363 5.981 22.496 Atomic orbital electron populations 1.69980 1.06018 1.26497 1.50792 1.25001 0.94851 0.99227 0.95300 0.86530 0.80088 0.83768 0.77576 1.19770 1.20961 1.21056 1.21228 0.93054 0.90992 1.50679 0.92689 1.19256 0.94129 0.90538 0.97785 1.22316 0.97012 0.88079 0.99014 1.62060 1.11563 1.03605 1.49248 1.22016 0.95162 0.90604 0.99317 1.21622 0.95800 0.96901 1.00375 1.22189 0.91747 0.84301 0.98378 1.87900 1.67683 1.41975 1.32430 1.22649 0.95492 0.95238 0.87425 1.21758 0.96835 0.96102 0.96219 1.22371 0.93842 0.99755 0.99118 1.22543 0.98829 0.99838 0.95325 1.22359 0.95677 1.01667 0.96562 1.22139 0.95611 1.00862 0.97052 1.22099 0.98077 0.94108 1.03034 1.22146 0.94158 0.98126 0.93011 0.93039 0.95624 0.96188 0.96255 0.91847 0.95563 0.90611 0.91630 0.90294 0.92993 0.93866 0.93370 0.90392 0.91323 0.91386 0.91681 0.91627 0.91825 0.91594 0.91578 0.91673 0.90331 0.92069 0.95713 0.88444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.83 13.29 55.43 0.74 -26.10 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.52 4.22 -27.88 -0.12 0.40 16 10 C 0.06 1.34 5.21 -3.82 -0.02 1.32 16 11 N -0.54 -10.05 4.81 -234.66 -1.13 -11.18 16 12 C 0.06 0.88 5.42 -3.83 -0.02 0.86 16 13 C -0.11 -1.48 5.75 -26.65 -0.15 -1.63 16 14 C 0.09 1.24 2.68 -26.61 -0.07 1.17 16 15 O -0.38 -5.01 9.83 -35.23 -0.35 -5.35 16 16 C 0.07 0.73 4.79 37.16 0.18 0.91 16 17 C -0.09 -0.83 3.19 -89.50 -0.29 -1.12 16 18 C -0.11 -1.06 6.22 -25.03 -0.16 -1.21 16 19 C -0.13 -0.98 6.91 -24.70 -0.17 -1.15 16 20 C -0.13 -0.90 6.83 -25.08 -0.17 -1.07 16 21 C -0.12 -0.90 6.46 -25.61 -0.17 -1.07 16 22 C -0.14 -2.02 5.72 -26.64 -0.15 -2.18 16 23 C 0.05 0.95 4.85 -3.83 -0.02 0.94 16 24 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.02 0.54 6.21 -51.93 -0.32 0.22 16 27 H 0.02 0.41 8.08 -51.93 -0.42 -0.01 16 28 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 1.09 8.12 -51.93 -0.42 0.67 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.05 0.68 7.79 -51.93 -0.40 0.27 16 34 H 0.04 0.43 8.09 -51.93 -0.42 0.01 16 35 H 0.05 0.51 7.83 -51.93 -0.41 0.11 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.70 7.77 -51.93 -0.40 0.30 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.48 7.67 -51.93 -0.40 0.08 16 45 H 0.08 1.26 8.14 -51.92 -0.42 0.84 16 46 H 0.06 0.84 7.95 -51.93 -0.41 0.43 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 48 H 0.10 1.98 5.81 -51.93 -0.30 1.68 16 LS Contribution 366.95 15.07 5.53 5.53 Total: -1.00 -29.73 366.95 -11.33 -41.07 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -9.37 Total: -3.25 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: -1.73 Total: -17.39 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: -0.39 Total: -37.28 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.35 Total: -5.35 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.73 -11.33 -41.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177497443.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.443 kcal (2) G-P(sol) polarization free energy of solvation -29.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds