Wall clock time and date at job start Tue Mar 31 2020 05:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47007 * 2 1 4 4 C 1.52996 * 109.46826 * 240.00211 * 2 1 3 5 5 C 1.53005 * 109.46826 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.47284 * 59.99976 * 5 4 2 7 7 C 1.53007 * 109.46840 * 299.99762 * 6 5 4 8 8 C 1.52997 * 109.46683 * 60.00409 * 7 6 5 9 9 H 1.09000 * 109.47847 * 59.99714 * 8 7 6 10 10 C 1.53006 * 109.47021 * 179.97438 * 8 7 6 11 11 C 1.50699 * 109.46866 * 294.99799 * 10 8 7 12 12 O 1.21282 * 120.00041 * 359.97438 * 11 10 8 13 13 N 1.34779 * 120.00037 * 180.02562 * 11 10 8 14 14 C 1.46497 * 119.99802 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.47006 * 179.97438 * 14 13 11 16 16 C 1.52993 * 109.47481 * 180.02562 * 15 14 13 17 17 C 1.50696 * 109.47432 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99822 * 359.97438 * 17 16 15 19 19 C 1.37884 * 120.00126 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99707 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 119.99956 * 0.27447 * 19 17 16 22 22 H 1.48503 * 109.47407 * 269.72718 * 21 19 17 23 23 H 1.48505 * 109.47281 * 29.72474 * 21 19 17 24 24 H 1.48501 * 109.47274 * 149.72572 * 21 19 17 25 25 H 1.08992 * 109.46983 * 299.99424 * 1 2 3 26 26 H 1.08998 * 109.47276 * 60.00338 * 1 2 3 27 27 H 1.09009 * 109.46833 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47394 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47196 * 300.00538 * 3 2 1 30 30 H 1.09002 * 109.46636 * 59.99680 * 3 2 1 31 31 H 1.09001 * 109.47552 * 299.99326 * 4 2 1 32 32 H 1.08998 * 109.47651 * 60.00230 * 4 2 1 33 33 H 1.09002 * 109.47210 * 179.97438 * 5 4 2 34 34 H 1.09005 * 109.47078 * 299.99536 * 5 4 2 35 35 H 1.08992 * 109.47188 * 59.99914 * 6 5 4 36 36 H 1.08997 * 109.46828 * 180.02562 * 6 5 4 37 37 H 1.08992 * 109.47354 * 300.00050 * 7 6 5 38 38 H 1.09004 * 109.46608 * 179.97438 * 7 6 5 39 39 H 1.09001 * 109.46801 * 174.99863 * 10 8 7 40 40 H 1.09000 * 109.47050 * 54.99751 * 10 8 7 41 41 H 0.96996 * 119.99844 * 359.97438 * 13 11 10 42 42 H 1.09001 * 109.47482 * 60.00268 * 14 13 11 43 43 H 1.09000 * 109.47357 * 299.99550 * 14 13 11 44 44 H 1.08996 * 109.47261 * 59.99667 * 15 14 13 45 45 H 1.09000 * 109.46866 * 300.00060 * 15 14 13 46 46 H 1.08996 * 109.47340 * 59.99477 * 16 15 14 47 47 H 1.09004 * 109.46672 * 300.00239 * 16 15 14 48 48 H 0.97005 * 119.99656 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7206 -1.2496 6 6 4.0806 -1.4415 -0.0004 7 6 3.5706 -0.7202 1.2489 8 6 2.0406 -0.7209 1.2492 9 1 1.6776 -1.7487 1.2494 10 6 1.5305 -0.0002 2.4988 11 6 1.9298 -0.7787 3.7258 12 8 2.5598 -1.8088 3.6120 13 7 1.5859 -0.3308 4.9496 14 6 1.9745 -1.0873 6.1423 15 6 1.4644 -0.3667 7.3920 16 6 1.8707 -1.1564 8.6378 17 6 1.3688 -0.4463 9.8685 18 1 0.8157 0.4763 9.7719 19 6 1.6158 -0.9744 11.1181 20 7 1.1773 -0.3549 12.1921 21 14 2.5791 -2.5660 11.2856 22 1 1.6411 -3.7171 11.2641 23 1 3.5364 -2.6865 10.1567 24 1 3.3258 -2.5599 12.5693 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2493 32 1 1.6767 -0.2074 -2.1392 33 1 3.9334 -1.2348 -2.1394 34 1 3.9330 0.3072 -1.2499 35 1 3.7176 -2.4693 -0.0002 36 1 5.1705 -1.4407 -0.0005 37 1 3.9335 0.3075 1.2487 38 1 3.9340 -1.2341 2.1389 39 1 0.4442 0.0776 2.4553 40 1 1.9648 0.9985 2.5449 41 1 1.0817 0.4929 5.0405 42 1 3.0609 -1.1642 6.1859 43 1 1.5410 -2.0863 6.0962 44 1 0.3780 -0.2893 7.3487 45 1 1.8982 0.6322 7.4379 46 1 2.9571 -1.2334 8.6808 47 1 1.4372 -2.1554 8.5920 48 1 1.3507 -0.7266 13.0712 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178527370.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:06 Heat of formation + Delta-G solvation = -88.064617 kcal Electronic energy + Delta-G solvation = -22495.751541 eV Core-core repulsion = 19355.524568 eV Total energy + Delta-G solvation = -3140.226972 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.58379 -38.91414 -35.52641 -33.70313 -33.26696 -32.46494 -31.41470 -28.47733 -27.62060 -26.95146 -25.75135 -23.09912 -22.02005 -21.15301 -20.67264 -19.71812 -18.36361 -17.08609 -16.68010 -15.80811 -15.59318 -15.34556 -14.90873 -14.61441 -14.45078 -14.22167 -13.90793 -13.64882 -13.20101 -12.93326 -12.75830 -12.69148 -12.20082 -12.08228 -12.05385 -11.91063 -11.71388 -11.60364 -11.44947 -11.19303 -11.07908 -10.90549 -10.87063 -10.34036 -10.25609 -10.13478 -10.07011 -9.90684 -9.75967 -9.38632 -9.23006 -8.80396 -8.56194 -6.07059 -4.05726 2.78911 3.30741 3.37837 3.39554 3.42806 4.35991 4.43056 4.43865 4.47969 4.82168 4.86935 4.94382 5.07679 5.11646 5.16799 5.25274 5.27078 5.34914 5.40153 5.42060 5.47430 5.57684 5.58994 5.64735 5.67694 5.69391 5.72232 5.83196 5.85596 5.96037 5.99532 6.02245 6.05752 6.12532 6.19272 6.34128 6.39623 6.44761 6.47172 6.72062 6.80941 7.22360 7.35830 7.67770 7.76893 8.39836 8.49869 8.96778 9.55274 11.06192 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.036393 B = 0.002705 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.193163 B =10348.513557 C =10781.485757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.061 4.061 3 C -0.148 4.148 4 C -0.106 4.106 5 C -0.122 4.122 6 C -0.117 4.117 7 C -0.123 4.123 8 C -0.056 4.056 9 H 0.077 0.923 10 C -0.143 4.143 11 C 0.507 3.493 12 O -0.543 6.543 13 N -0.729 5.729 14 C 0.114 3.886 15 C -0.113 4.113 16 C -0.011 4.011 17 C -0.522 4.522 18 H 0.072 0.928 19 C 0.066 3.934 20 N -0.903 5.903 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.264 1.264 24 H -0.288 1.288 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.399 0.601 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.018 0.982 47 H 0.014 0.986 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.161 2.461 -28.572 28.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.061 4.061 3 C -0.205 4.205 4 C -0.144 4.144 5 C -0.159 4.159 6 C -0.154 4.154 7 C -0.160 4.160 8 C -0.075 4.075 9 H 0.095 0.905 10 C -0.182 4.182 11 C 0.293 3.707 12 O -0.421 6.421 13 N -0.380 5.380 14 C -0.009 4.009 15 C -0.151 4.151 16 C -0.049 4.049 17 C -0.560 4.560 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.542 5.542 21 Si 0.707 3.293 22 H -0.202 1.202 23 H -0.189 1.189 24 H -0.214 1.214 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.101 0.899 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.232 0.768 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.037 0.963 47 H 0.032 0.968 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.619 1.703 -28.440 28.537 hybrid contribution 0.137 -0.369 0.411 0.569 sum 1.756 1.334 -28.029 28.116 Atomic orbital electron populations 1.21960 0.94779 1.01873 1.01720 1.20548 0.95055 0.95515 0.94948 1.22038 1.01621 0.95293 1.01518 1.21563 0.95617 1.00356 0.96827 1.21601 0.95664 1.00802 0.97856 1.21492 0.99892 0.99557 0.94479 1.21756 0.94680 1.00525 0.99013 1.20874 0.95970 0.99336 0.91338 0.90487 1.21901 1.02975 1.00376 0.92994 1.20720 0.79384 0.85849 0.84750 1.90656 1.39989 1.24719 1.86689 1.46226 1.57553 1.27898 1.06311 1.21620 1.00033 0.95526 0.83712 1.21699 1.00600 0.99585 0.93222 1.19501 0.96716 0.95659 0.93038 1.21100 1.35741 1.09931 0.89231 0.91025 1.25033 0.95350 0.97272 0.95847 1.69915 1.46555 1.39690 0.98045 0.86773 0.80806 0.84068 0.77637 1.20246 1.18891 1.21358 0.92289 0.92774 0.92629 0.91921 0.92979 0.92514 0.92041 0.92219 0.92490 0.91847 0.92099 0.92391 0.92451 0.89872 0.88806 0.88927 0.76768 0.91935 0.91932 0.92176 0.92154 0.96344 0.96777 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 8.13 37.16 0.30 -0.72 16 2 C -0.06 -0.46 0.54 -154.51 -0.08 -0.54 16 3 C -0.15 -1.03 7.43 37.16 0.28 -0.75 16 4 C -0.11 -0.79 4.73 -26.73 -0.13 -0.92 16 5 C -0.12 -0.93 5.65 -26.73 -0.15 -1.08 16 6 C -0.12 -1.07 5.92 -26.73 -0.16 -1.23 16 7 C -0.12 -1.27 4.67 -26.73 -0.12 -1.39 16 8 C -0.06 -0.54 1.14 -90.62 -0.10 -0.65 16 9 H 0.08 0.89 7.95 -51.93 -0.41 0.47 16 10 C -0.14 -1.35 4.46 -27.88 -0.12 -1.47 16 11 C 0.51 6.84 7.55 -10.99 -0.08 6.76 16 12 O -0.54 -9.32 13.97 5.56 0.08 -9.24 16 13 N -0.73 -9.74 5.56 -60.29 -0.33 -10.07 16 14 C 0.11 1.89 5.67 -4.04 -0.02 1.86 16 15 C -0.11 -2.11 5.27 -26.73 -0.14 -2.25 16 16 C -0.01 -0.26 4.04 -27.89 -0.11 -0.38 16 17 C -0.52 -14.74 9.66 -34.44 -0.33 -15.07 16 18 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 19 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 20 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 21 Si 0.88 21.80 27.47 -169.99 -4.67 17.13 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.26 -6.32 6.53 56.52 0.37 -5.95 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H 0.06 0.39 6.32 -51.93 -0.33 0.06 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.41 8.14 -51.92 -0.42 -0.02 16 28 H 0.06 0.45 4.81 -51.93 -0.25 0.20 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.37 6.55 -51.93 -0.34 0.03 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.46 6.43 -51.93 -0.33 0.13 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.55 6.43 -51.93 -0.33 0.22 16 38 H 0.08 1.11 5.95 -51.93 -0.31 0.80 16 39 H 0.09 0.74 6.18 -51.93 -0.32 0.42 16 40 H 0.09 0.74 6.71 -51.93 -0.35 0.40 16 41 H 0.40 4.26 8.47 -40.82 -0.35 3.91 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.02 0.43 7.19 -51.93 -0.37 0.06 16 47 H 0.01 0.33 7.58 -51.93 -0.39 -0.07 16 48 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 356.59 15.07 5.37 5.37 Total: -1.00 -31.75 356.59 -8.61 -40.37 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -8.75 Total: -0.56 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -1.08 Total: -15.98 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.44 Total: -37.09 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.08 Total: -9.24 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.75 -8.61 -40.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178527370.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.698 kcal (2) G-P(sol) polarization free energy of solvation -31.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds