Wall clock time and date at job start Tue Mar 31 2020 05:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47218 * 2 1 4 4 C 1.53001 * 109.46897 * 303.38630 * 3 2 1 5 5 C 1.52995 * 109.47265 * 183.38682 * 3 2 1 6 6 N 1.46507 * 109.47431 * 63.38211 * 3 2 1 7 7 C 1.46496 * 120.00277 * 239.22636 * 6 3 2 8 8 C 1.50696 * 109.47201 * 95.70196 * 7 6 3 9 9 H 1.08005 * 119.99914 * 5.63559 * 8 7 6 10 10 C 1.37873 * 120.00154 * 185.63235 * 8 7 6 11 11 N 1.31519 * 119.99992 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00169 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47055 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.46987 * 119.99875 * 12 10 8 15 15 H 1.48498 * 109.47262 * 240.00148 * 12 10 8 16 16 C 1.34773 * 119.99500 * 59.22736 * 6 3 2 17 17 O 1.21285 * 120.00187 * 186.03474 * 16 6 3 18 18 C 1.50702 * 120.00454 * 6.03048 * 16 6 3 19 19 H 1.08998 * 115.54941 * 346.03635 * 18 16 6 20 20 C 1.52998 * 117.49875 * 131.70062 * 18 16 6 21 21 C 1.52999 * 117.50076 * 200.32639 * 18 16 6 22 22 C 1.53001 * 117.49760 * 145.02170 * 21 18 16 23 23 C 1.52995 * 117.49966 * 359.97438 * 21 18 16 24 24 C 1.53001 * 109.46888 * 180.02562 * 23 21 18 25 25 H 1.08997 * 109.47542 * 171.80244 * 1 2 3 26 26 H 1.09008 * 109.47185 * 291.79921 * 1 2 3 27 27 H 1.09004 * 109.47130 * 51.79539 * 1 2 3 28 28 H 1.08992 * 109.47030 * 239.99692 * 2 1 3 29 29 H 1.09003 * 109.47084 * 119.99476 * 2 1 3 30 30 H 1.08991 * 109.47047 * 299.99748 * 4 3 2 31 31 H 1.08999 * 109.47383 * 60.00140 * 4 3 2 32 32 H 1.09010 * 109.47104 * 180.02562 * 4 3 2 33 33 H 1.09007 * 109.47504 * 180.02562 * 5 3 2 34 34 H 1.09002 * 109.47083 * 299.99689 * 5 3 2 35 35 H 1.09000 * 109.47248 * 59.99604 * 5 3 2 36 36 H 1.08996 * 109.47227 * 215.70078 * 7 6 3 37 37 H 1.09000 * 109.46772 * 335.70254 * 7 6 3 38 38 H 0.97002 * 119.99814 * 179.97438 * 11 10 8 39 39 H 1.09002 * 117.50409 * 214.98208 * 20 18 16 40 40 H 1.09000 * 117.50025 * 0.02562 * 20 18 16 41 41 H 1.09003 * 109.46808 * 59.99954 * 22 21 18 42 42 H 1.08997 * 109.47011 * 179.97438 * 22 21 18 43 43 H 1.09002 * 109.47210 * 300.00217 * 22 21 18 44 44 H 1.08995 * 109.47147 * 299.99924 * 23 21 18 45 45 H 1.08995 * 109.47024 * 60.00248 * 23 21 18 46 46 H 1.08995 * 109.47107 * 60.00272 * 24 23 21 47 47 H 1.09005 * 109.46795 * 180.02562 * 24 23 21 48 48 H 1.08995 * 109.47143 * 299.99900 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.4616 2.1878 -1.2045 5 6 3.5676 1.4433 -0.0852 6 7 1.6194 2.1092 1.2349 7 6 0.7857 3.3121 1.1705 8 6 -0.6631 2.9282 1.3273 9 1 -0.9296 1.9060 1.5522 10 6 -1.6484 3.8819 1.1838 11 7 -1.3240 5.1265 0.9095 12 14 -3.4443 3.4059 1.3775 13 1 -3.5420 1.9553 1.6803 14 1 -4.0460 4.1857 2.4888 15 1 -4.1726 3.6979 0.1168 16 6 1.9994 1.6159 2.4301 17 8 1.5634 2.1008 3.4527 18 6 2.9662 0.4618 2.4960 19 1 3.1288 -0.0694 1.5583 20 6 4.1549 0.5897 3.4507 21 6 3.0015 -0.3574 3.7878 22 6 3.2621 -1.8600 3.6645 23 6 2.0529 0.0582 4.9140 24 6 2.2402 -0.8776 6.1098 25 1 -0.3634 -1.0171 -0.1465 26 1 -0.3634 0.3817 0.9542 27 1 -0.3633 0.6356 -0.8076 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.7745 1.6919 -2.1232 31 1 0.3733 2.1873 -1.1438 32 1 1.8253 3.2155 -1.2048 33 1 3.9310 2.4710 -0.0848 34 1 3.9796 0.9123 0.7729 35 1 3.8805 0.9472 -1.0040 36 1 1.0696 3.9943 1.9718 37 1 0.9294 3.8026 0.2077 38 1 -2.0172 5.7974 0.8082 39 1 5.0995 0.1422 3.1413 40 1 4.2375 1.5084 4.0315 41 1 4.2314 -2.0231 3.1934 42 1 3.2600 -2.3117 4.6565 43 1 2.4810 -2.3155 3.0558 44 1 2.2740 1.0819 5.2160 45 1 1.0230 -0.0025 4.5624 46 1 3.2701 -0.8164 6.4612 47 1 1.5640 -0.5817 6.9120 48 1 2.0194 -1.9014 5.8081 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189912616.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:07 Heat of formation + Delta-G solvation = -4.176515 kcal Electronic energy + Delta-G solvation = -24710.529739 eV Core-core repulsion = 21573.940427 eV Total energy + Delta-G solvation = -3136.589311 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.29353 -37.86887 -36.25091 -33.13017 -31.98569 -31.62634 -29.86587 -28.66017 -27.81579 -26.24898 -23.84461 -23.56575 -23.03379 -22.08172 -20.18526 -18.72149 -17.74962 -16.62060 -15.64800 -15.49165 -14.69126 -14.50602 -14.46981 -14.24280 -13.80044 -13.58891 -13.26646 -13.05693 -12.79515 -12.69336 -12.22966 -12.10163 -11.93109 -11.68327 -11.67639 -11.53088 -11.36189 -11.12765 -11.03103 -10.93538 -10.80246 -10.65001 -10.53312 -10.37815 -10.35540 -10.00330 -9.83349 -9.69032 -9.33800 -9.22589 -8.58710 -8.35523 -7.48473 -5.97456 -3.99153 3.22636 3.32284 3.40635 3.44864 3.94909 4.23879 4.50101 4.85394 4.90477 5.07461 5.13630 5.20872 5.33938 5.38115 5.42065 5.51242 5.56285 5.67367 5.72356 5.74440 5.83913 5.86964 5.92228 5.94487 5.97029 6.06548 6.10951 6.18596 6.21033 6.27786 6.29822 6.37172 6.42893 6.44191 6.57702 6.59657 6.66230 6.87996 6.90151 7.07689 7.23178 7.53659 7.72069 8.02415 8.33839 8.60335 9.02059 9.27320 9.64961 11.10579 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015815 B = 0.006744 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.067661 B = 4150.602452 C = 4933.415050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.140 4.140 3 C 0.168 3.832 4 C -0.150 4.150 5 C -0.177 4.177 6 N -0.584 5.584 7 C 0.242 3.758 8 C -0.509 4.509 9 H 0.064 0.936 10 C 0.058 3.942 11 N -0.899 5.899 12 Si 0.890 3.110 13 H -0.274 1.274 14 H -0.285 1.285 15 H -0.285 1.285 16 C 0.537 3.463 17 O -0.537 6.537 18 C -0.199 4.199 19 H 0.136 0.864 20 C -0.151 4.151 21 C -0.096 4.096 22 C -0.121 4.121 23 C -0.081 4.081 24 C -0.151 4.151 25 H 0.037 0.963 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.085 0.915 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.029 0.971 37 H 0.045 0.955 38 H 0.260 0.740 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.053 0.947 42 H 0.069 0.931 43 H 0.058 0.942 44 H 0.082 0.918 45 H 0.067 0.933 46 H 0.049 0.951 47 H 0.050 0.950 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.717 -12.526 -0.383 16.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.178 4.178 3 C 0.082 3.918 4 C -0.207 4.207 5 C -0.235 4.235 6 N -0.315 5.315 7 C 0.123 3.877 8 C -0.548 4.548 9 H 0.082 0.918 10 C -0.142 4.142 11 N -0.539 5.539 12 Si 0.718 3.282 13 H -0.198 1.198 14 H -0.211 1.211 15 H -0.212 1.212 16 C 0.324 3.676 17 O -0.414 6.414 18 C -0.220 4.220 19 H 0.153 0.847 20 C -0.189 4.189 21 C -0.097 4.097 22 C -0.178 4.178 23 C -0.118 4.118 24 C -0.208 4.208 25 H 0.056 0.944 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.047 0.953 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.113 0.887 40 H 0.116 0.884 41 H 0.072 0.928 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.100 0.900 45 H 0.085 0.915 46 H 0.068 0.932 47 H 0.069 0.931 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.380 -12.053 0.099 15.907 hybrid contribution -1.041 -0.084 -0.173 1.059 sum 9.339 -12.137 -0.074 15.315 Atomic orbital electron populations 1.21942 0.94688 0.99922 1.04521 1.22252 0.97854 0.96015 1.01687 1.20287 0.92798 0.92323 0.86344 1.22127 1.03765 0.99847 0.94976 1.22692 0.95900 1.02688 1.02237 1.48232 1.50583 1.29190 1.03495 1.19348 0.88892 0.81244 0.98218 1.21573 0.90821 0.95585 1.46836 0.91812 1.24906 0.98868 0.94898 0.95570 1.69943 1.33005 1.01407 1.49510 0.86562 0.85410 0.78656 0.77544 1.19817 1.21089 1.21172 1.19240 0.81320 0.83195 0.83857 1.90644 1.56440 1.60729 1.33631 1.23303 1.01189 1.01100 0.96393 0.84653 1.23153 0.91904 1.01854 1.01944 1.21510 0.99850 0.92672 0.95628 1.21496 1.01024 0.92903 1.02381 1.21078 0.98562 0.99855 0.92310 1.21903 1.00980 0.99588 0.98360 0.94415 0.90812 0.91822 0.92082 0.91052 0.92975 0.89624 0.92017 0.92290 0.90956 0.92274 0.95258 0.93670 0.93026 0.88727 0.88423 0.92760 0.91207 0.92296 0.89954 0.91471 0.93176 0.93106 0.92908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.19 37.16 0.34 -2.30 16 2 C -0.14 -2.10 4.61 -26.73 -0.12 -2.23 16 3 C 0.17 2.79 0.74 -131.82 -0.10 2.69 16 4 C -0.15 -2.53 6.76 37.16 0.25 -2.28 16 5 C -0.18 -2.43 8.25 37.16 0.31 -2.13 16 6 N -0.58 -12.14 1.96 -160.19 -0.31 -12.45 16 7 C 0.24 6.17 4.42 -5.20 -0.02 6.14 16 8 C -0.51 -13.97 8.59 -34.44 -0.30 -14.27 16 9 H 0.06 1.77 5.40 -52.48 -0.28 1.49 16 10 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 11 N -0.90 -26.40 13.29 55.43 0.74 -25.67 16 12 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 13 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 C 0.54 11.14 6.76 -10.99 -0.07 11.06 16 17 O -0.54 -13.18 13.27 5.55 0.07 -13.11 16 18 C -0.20 -3.11 2.69 -91.77 -0.25 -3.36 16 19 H 0.14 1.88 3.31 -51.93 -0.17 1.71 16 20 C -0.15 -2.06 9.43 -26.73 -0.25 -2.31 16 21 C -0.10 -1.35 2.47 -154.51 -0.38 -1.73 16 22 C -0.12 -1.34 9.49 37.16 0.35 -0.98 16 23 C -0.08 -1.29 4.41 -26.73 -0.12 -1.40 16 24 C -0.15 -1.88 8.92 37.16 0.33 -1.55 16 25 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 1.53 5.43 -51.92 -0.28 1.25 16 27 H 0.06 1.13 5.93 -51.93 -0.31 0.82 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.07 1.05 4.68 -51.93 -0.24 0.81 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 1.67 5.51 -51.93 -0.29 1.38 16 32 H 0.06 1.10 6.89 -51.92 -0.36 0.74 16 33 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 34 H 0.07 0.94 4.35 -51.93 -0.23 0.72 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.03 0.86 7.69 -51.93 -0.40 0.46 16 37 H 0.05 1.16 5.52 -51.93 -0.29 0.88 16 38 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 39 H 0.09 1.03 8.05 -51.93 -0.42 0.61 16 40 H 0.10 1.47 8.05 -51.93 -0.42 1.05 16 41 H 0.05 0.52 7.90 -51.93 -0.41 0.10 16 42 H 0.07 0.70 5.59 -51.93 -0.29 0.41 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.08 1.50 6.60 -51.93 -0.34 1.16 16 45 H 0.07 1.24 7.84 -51.93 -0.41 0.83 16 46 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.05 0.59 6.45 -51.93 -0.33 0.25 16 LS Contribution 350.22 15.07 5.28 5.28 Total: -1.00 -30.61 350.22 -7.35 -37.96 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -7.98 Total: 4.16 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -0.13 Total: -13.09 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.42 Total: -38.12 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.07 Total: -13.11 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.61 -7.35 -37.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189912616.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.783 kcal (2) G-P(sol) polarization free energy of solvation -30.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds