Wall clock time and date at job start Tue Mar 31 2020 05:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47012 * 2 1 4 4 C 1.52997 * 109.46807 * 186.02586 * 3 2 1 5 5 C 1.52991 * 109.47245 * 66.02456 * 3 2 1 6 6 N 1.46504 * 109.46710 * 306.02398 * 3 2 1 7 7 C 1.46496 * 119.99711 * 125.16968 * 6 3 2 8 8 C 1.50703 * 109.47674 * 84.97518 * 7 6 3 9 9 H 1.08001 * 119.99510 * 359.97438 * 8 7 6 10 10 C 1.37872 * 120.00123 * 180.02562 * 8 7 6 11 11 N 1.31519 * 120.00042 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99939 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.47161 * 89.99839 * 12 10 8 14 14 H 1.48497 * 109.47246 * 209.99438 * 12 10 8 15 15 H 1.48498 * 109.47068 * 329.99584 * 12 10 8 16 16 C 1.34777 * 120.00133 * 305.16041 * 6 3 2 17 17 O 1.21280 * 119.99573 * 185.33652 * 16 6 3 18 18 C 1.50693 * 119.99962 * 5.34058 * 16 6 3 19 19 H 1.09003 * 115.55298 * 330.58243 * 18 16 6 20 20 C 1.52999 * 117.49996 * 116.25573 * 18 16 6 21 21 C 1.52998 * 60.00307 * 107.48905 * 20 18 16 22 22 C 1.53000 * 117.50121 * 252.51404 * 21 20 18 23 23 C 1.53005 * 117.50099 * 107.48835 * 21 20 18 24 24 C 1.52997 * 109.46766 * 111.37823 * 23 21 20 25 25 H 1.09007 * 109.47101 * 64.97768 * 1 2 3 26 26 H 1.08995 * 109.47439 * 184.97954 * 1 2 3 27 27 H 1.08995 * 109.47648 * 304.98051 * 1 2 3 28 28 H 1.08999 * 109.46860 * 239.99679 * 2 1 3 29 29 H 1.08995 * 109.46852 * 119.99567 * 2 1 3 30 30 H 1.09000 * 109.47169 * 295.21041 * 4 3 2 31 31 H 1.09007 * 109.47229 * 55.21086 * 4 3 2 32 32 H 1.09005 * 109.46924 * 175.20731 * 4 3 2 33 33 H 1.09004 * 109.47086 * 179.97438 * 5 3 2 34 34 H 1.09005 * 109.47364 * 299.99953 * 5 3 2 35 35 H 1.08998 * 109.47233 * 59.99807 * 5 3 2 36 36 H 1.08998 * 109.47371 * 204.97612 * 7 6 3 37 37 H 1.09006 * 109.46901 * 324.97035 * 7 6 3 38 38 H 0.97003 * 119.99891 * 180.02562 * 11 10 8 39 39 H 1.08999 * 117.49917 * 214.97879 * 20 18 16 40 40 H 1.08995 * 117.49799 * 359.97438 * 20 18 16 41 41 H 1.08994 * 109.47317 * 128.61703 * 22 21 20 42 42 H 1.09001 * 109.47436 * 248.62038 * 22 21 20 43 43 H 1.09006 * 109.46639 * 8.61786 * 22 21 20 44 44 H 1.08997 * 109.46869 * 231.37777 * 23 21 20 45 45 H 1.08997 * 109.46686 * 351.38586 * 23 21 20 46 46 H 1.08998 * 109.47567 * 300.00394 * 24 23 21 47 47 H 1.09004 * 109.47257 * 60.00721 * 24 23 21 48 48 H 1.08998 * 109.47134 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5624 1.4451 -0.1514 5 6 1.6574 2.1187 1.3180 6 7 1.4368 2.1736 -1.1171 7 6 0.7091 3.4206 -0.8687 8 6 1.6820 4.5708 -0.8294 9 1 2.7370 4.3908 -0.9745 10 6 1.2255 5.8526 -0.6071 11 7 -0.0592 6.0716 -0.4299 12 14 2.4315 7.2782 -0.5576 13 1 2.5921 7.8385 -1.9236 14 1 1.9150 8.3322 0.3520 15 1 3.7462 6.7974 -0.0621 16 6 1.5515 1.6991 -2.3734 17 8 1.1373 2.3515 -3.3081 18 6 2.1944 0.3580 -2.6165 19 1 2.9527 0.0618 -1.8917 20 6 1.3209 -0.7458 -3.2161 21 6 2.3985 -0.0745 -4.0699 22 6 1.9344 0.8878 -5.1651 23 6 3.6519 -0.8896 -4.3949 24 6 3.6715 -1.2210 -5.8885 25 1 -0.3634 0.4347 -0.9313 26 1 -0.3634 -1.0237 0.0892 27 1 -0.3634 0.5891 0.8419 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 4.0152 0.9758 0.7219 31 1 3.8394 0.8893 -1.0473 32 1 3.9173 2.4722 -0.2369 33 1 2.0211 3.1463 1.3181 34 1 0.5727 2.1168 1.4259 35 1 2.1061 1.5747 2.1491 36 1 -0.0147 3.5842 -1.6671 37 1 0.1877 3.3529 0.0861 38 1 -0.3805 6.9735 -0.2739 39 1 1.5048 -1.7682 -2.8860 40 1 0.2812 -0.5021 -3.4343 41 1 2.4681 1.8332 -5.0682 42 1 2.1411 0.4524 -6.1428 43 1 0.8633 1.0632 -5.0645 44 1 4.5387 -0.3097 -4.1397 45 1 3.6437 -1.8142 -3.8178 46 1 2.7845 -1.8008 -6.1437 47 1 3.6797 -0.2964 -6.4657 48 1 4.5646 -1.8013 -6.1202 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189912638.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:08 Heat of formation + Delta-G solvation = -25.660311 kcal Electronic energy + Delta-G solvation = -24551.284684 eV Core-core repulsion = 21413.763765 eV Total energy + Delta-G solvation = -3137.520919 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.77668 -39.11311 -37.88477 -35.25352 -33.38695 -32.98871 -31.23359 -30.16897 -28.86478 -27.97513 -25.62324 -24.62177 -24.38168 -23.73574 -21.68539 -19.83106 -19.27773 -18.65151 -17.42802 -16.82387 -16.37730 -16.31302 -15.74771 -15.43854 -15.37761 -14.89901 -14.65594 -14.30667 -14.20748 -13.89514 -13.58493 -13.48035 -13.28953 -13.23771 -13.01565 -12.88624 -12.80176 -12.67199 -12.59124 -12.47048 -12.32378 -12.17854 -11.97763 -11.89940 -11.76812 -11.60491 -11.45912 -11.23020 -10.80180 -10.62657 -10.47611 -10.15186 -9.26961 -8.19226 -6.32453 1.33060 1.35959 1.45252 1.78343 2.31037 2.45545 2.93000 3.09020 3.59645 3.72205 3.84961 3.92678 4.06318 4.14437 4.17571 4.29293 4.44231 4.50309 4.57437 4.67252 4.79099 4.81161 4.84944 4.87577 4.88351 4.93631 4.98491 5.00322 5.03361 5.10651 5.16520 5.17272 5.22949 5.24371 5.26906 5.29286 5.38521 5.42244 5.47259 5.53424 5.59153 5.65579 5.67611 5.98999 6.12889 6.75657 6.95963 7.32638 7.63489 8.86878 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016896 B = 0.006091 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.797801 B = 4595.697611 C = 5369.708461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.141 4.141 3 C 0.159 3.841 4 C -0.162 4.162 5 C -0.145 4.145 6 N -0.586 5.586 7 C 0.265 3.735 8 C -0.525 4.525 9 H 0.049 0.951 10 C 0.008 3.992 11 N -0.929 5.929 12 Si 0.959 3.041 13 H -0.284 1.284 14 H -0.275 1.275 15 H -0.263 1.263 16 C 0.524 3.476 17 O -0.595 6.595 18 C -0.197 4.197 19 H 0.157 0.843 20 C -0.128 4.128 21 C -0.100 4.100 22 C -0.101 4.101 23 C -0.080 4.080 24 C -0.150 4.150 25 H 0.020 0.980 26 H 0.075 0.925 27 H 0.043 0.957 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.034 0.966 33 H 0.045 0.955 34 H 0.046 0.954 35 H 0.091 0.909 36 H -0.014 1.014 37 H 0.028 0.972 38 H 0.265 0.735 39 H 0.140 0.860 40 H 0.076 0.924 41 H 0.029 0.971 42 H 0.076 0.924 43 H 0.034 0.966 44 H 0.063 0.937 45 H 0.089 0.911 46 H 0.059 0.941 47 H 0.049 0.951 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.106 -19.493 -0.566 21.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.179 4.179 3 C 0.075 3.925 4 C -0.220 4.220 5 C -0.202 4.202 6 N -0.316 5.316 7 C 0.144 3.856 8 C -0.564 4.564 9 H 0.067 0.933 10 C -0.191 4.191 11 N -0.570 5.570 12 Si 0.784 3.216 13 H -0.210 1.210 14 H -0.200 1.200 15 H -0.187 1.187 16 C 0.314 3.686 17 O -0.477 6.477 18 C -0.217 4.217 19 H 0.174 0.826 20 C -0.166 4.166 21 C -0.100 4.100 22 C -0.157 4.157 23 C -0.118 4.118 24 C -0.207 4.207 25 H 0.040 0.960 26 H 0.094 0.906 27 H 0.062 0.938 28 H 0.115 0.885 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.090 0.910 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.110 0.890 36 H 0.004 0.996 37 H 0.046 0.954 38 H 0.073 0.927 39 H 0.158 0.842 40 H 0.094 0.906 41 H 0.048 0.952 42 H 0.094 0.906 43 H 0.054 0.946 44 H 0.082 0.918 45 H 0.108 0.892 46 H 0.079 0.921 47 H 0.068 0.932 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.752 -18.996 -0.959 20.539 hybrid contribution -0.197 1.982 0.016 1.991 sum 7.555 -17.014 -0.943 18.640 Atomic orbital electron populations 1.21674 0.96479 1.01655 1.00220 1.22419 0.96127 0.94137 1.05194 1.20679 0.93165 0.92420 0.86219 1.22444 0.94218 1.01751 1.03569 1.22035 1.01189 1.01014 0.96002 1.48242 1.53098 1.23828 1.06435 1.18675 0.91160 0.81077 0.94720 1.21623 0.93789 0.92808 1.48164 0.93318 1.25782 0.96894 1.01411 0.94972 1.70058 1.14681 1.22119 1.50095 0.85538 0.79380 0.78845 0.77801 1.20976 1.20017 1.18674 1.20275 0.78759 0.87361 0.82212 1.90631 1.52235 1.61618 1.43174 1.22959 1.05660 0.93235 0.99889 0.82604 1.23270 0.95450 0.96792 1.01042 1.21765 0.98839 0.99682 0.89763 1.21307 0.99956 0.96992 0.97490 1.21105 0.93766 0.98892 0.97990 1.21812 1.02401 1.01376 0.95111 0.96026 0.90590 0.93760 0.88491 0.88167 0.88535 0.91046 0.94647 0.93574 0.93457 0.89003 0.99639 0.95445 0.92650 0.84234 0.90579 0.95161 0.90580 0.94639 0.91814 0.89206 0.92145 0.93246 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.89 9.46 71.98 0.68 -3.21 16 2 C -0.14 -3.38 4.44 30.59 0.14 -3.24 16 3 C 0.16 5.15 0.72 3.60 0.00 5.15 16 4 C -0.16 -4.57 8.37 71.98 0.60 -3.97 16 5 C -0.15 -4.90 7.00 71.98 0.50 -4.40 16 6 N -0.59 -25.54 1.64 -779.10 -1.28 -26.82 16 7 C 0.27 14.67 4.55 85.63 0.39 15.06 16 8 C -0.53 -30.81 8.42 25.60 0.22 -30.60 16 9 H 0.05 2.86 7.70 -2.91 -0.02 2.84 16 10 C 0.01 0.46 5.46 84.65 0.46 0.92 16 11 N -0.93 -57.50 13.29 21.45 0.28 -57.22 16 12 Si 0.96 46.17 29.54 68.60 2.03 48.20 16 13 H -0.28 -13.72 7.11 99.48 0.71 -13.02 16 14 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 15 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 16 C 0.52 22.70 6.35 87.65 0.56 23.25 16 17 O -0.59 -31.74 12.69 -3.03 -0.04 -31.78 16 18 C -0.20 -5.84 3.04 -11.54 -0.04 -5.87 16 19 H 0.16 3.77 3.53 -2.39 -0.01 3.77 16 20 C -0.13 -3.07 8.85 30.59 0.27 -2.80 16 21 C -0.10 -2.64 2.47 -52.18 -0.13 -2.76 16 22 C -0.10 -3.31 7.74 71.98 0.56 -2.75 16 23 C -0.08 -1.48 6.12 30.59 0.19 -1.30 16 24 C -0.15 -2.46 8.92 71.98 0.64 -1.82 16 25 H 0.02 0.71 7.12 -2.38 -0.02 0.70 16 26 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.04 1.29 6.39 -2.39 -0.02 1.27 16 28 H 0.10 2.06 3.61 -2.39 -0.01 2.05 16 29 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.07 1.80 5.02 -2.38 -0.01 1.79 16 32 H 0.03 1.23 8.03 -2.38 -0.02 1.21 16 33 H 0.05 1.90 6.85 -2.39 -0.02 1.88 16 34 H 0.05 1.71 5.44 -2.38 -0.01 1.70 16 35 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 36 H -0.01 -0.95 7.35 -2.39 -0.02 -0.96 16 37 H 0.03 1.55 5.95 -2.38 -0.01 1.54 16 38 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 39 H 0.14 2.17 8.05 -2.39 -0.02 2.15 16 40 H 0.08 2.16 8.05 -2.39 -0.02 2.14 16 41 H 0.03 1.18 7.39 -2.39 -0.02 1.16 16 42 H 0.08 2.01 5.59 -2.39 -0.01 2.00 16 43 H 0.03 1.35 6.89 -2.38 -0.02 1.33 16 44 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.09 1.21 7.90 -2.39 -0.02 1.19 16 46 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.05 0.93 6.45 -2.39 -0.02 0.91 16 48 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -75.32 352.96 6.97 -68.36 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.93 Total: 17.59 kcal Atomic # 6 Polarization: -23.37 SS G_CDS: 5.04 Total: -18.32 kcal Atomic # 7 Polarization: -83.04 SS G_CDS: -0.99 Total: -84.03 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -0.04 Total: -31.78 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -75.32 6.97 -68.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189912638.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.695 kcal (2) G-P(sol) polarization free energy of solvation -75.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds