Wall clock time and date at job start Tue Mar 31 2020 05:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47015 * 2 1 4 4 C 1.53005 * 109.46976 * 184.55334 * 3 2 1 5 5 C 1.52999 * 109.47279 * 64.55372 * 3 2 1 6 6 N 1.46494 * 109.47140 * 304.55277 * 3 2 1 7 7 C 1.46502 * 119.99920 * 110.63311 * 6 3 2 8 8 C 1.50699 * 109.46729 * 263.02261 * 7 6 3 9 9 H 1.07996 * 120.00188 * 2.73863 * 8 7 6 10 10 C 1.37886 * 119.99978 * 182.73124 * 8 7 6 11 11 N 1.31518 * 119.99726 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00109 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47022 * 60.00497 * 12 10 8 14 14 H 1.48503 * 109.47122 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.47350 * 300.00697 * 12 10 8 16 16 C 1.34783 * 120.00083 * 290.62853 * 6 3 2 17 17 O 1.21274 * 119.99703 * 183.08923 * 16 6 3 18 18 C 1.50696 * 119.99914 * 3.09340 * 16 6 3 19 19 H 1.09011 * 115.56001 * 17.58127 * 18 16 6 20 20 C 1.52991 * 117.49963 * 231.89305 * 18 16 6 21 21 C 1.53001 * 117.50025 * 163.26703 * 18 16 6 22 22 C 1.52997 * 117.49720 * 0.02562 * 21 18 16 23 23 C 1.52998 * 117.52123 * 214.96907 * 21 18 16 24 24 C 1.53002 * 109.47106 * 180.11786 * 23 21 18 25 25 H 1.09001 * 109.47049 * 321.41572 * 1 2 3 26 26 H 1.09002 * 109.46841 * 81.41639 * 1 2 3 27 27 H 1.08992 * 109.47324 * 201.40955 * 1 2 3 28 28 H 1.08994 * 109.47546 * 239.99606 * 2 1 3 29 29 H 1.09000 * 109.47054 * 119.99712 * 2 1 3 30 30 H 1.08999 * 109.46927 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.46840 * 299.99904 * 4 3 2 32 32 H 1.09000 * 109.47389 * 59.99904 * 4 3 2 33 33 H 1.08993 * 109.47116 * 302.24352 * 5 3 2 34 34 H 1.09005 * 109.47098 * 62.24041 * 5 3 2 35 35 H 1.08999 * 109.47280 * 182.23991 * 5 3 2 36 36 H 1.08996 * 109.47501 * 23.02372 * 7 6 3 37 37 H 1.08998 * 109.47147 * 143.02660 * 7 6 3 38 38 H 0.97000 * 119.99825 * 179.97438 * 11 10 8 39 39 H 1.09001 * 117.49930 * 145.02045 * 20 18 16 40 40 H 1.09000 * 117.50003 * 359.97438 * 20 18 16 41 41 H 1.09000 * 109.47392 * 180.02562 * 22 21 18 42 42 H 1.09000 * 109.47669 * 60.00494 * 22 21 18 43 43 H 1.09009 * 109.46658 * 300.00641 * 22 21 18 44 44 H 1.09002 * 109.47088 * 300.12119 * 23 21 18 45 45 H 1.09006 * 109.46676 * 60.11950 * 23 21 18 46 46 H 1.09000 * 109.47048 * 300.00804 * 24 23 21 47 47 H 1.09004 * 109.46757 * 60.00267 * 24 23 21 48 48 H 1.08998 * 109.46570 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5657 1.4440 -0.1145 5 6 1.6256 2.1300 1.3025 6 7 1.4642 2.1640 -1.1375 7 6 0.4745 3.2200 -0.9101 8 6 -0.9118 2.6547 -1.0829 9 1 -1.0440 1.6037 -1.2930 10 6 -2.0113 3.4794 -0.9725 11 7 -1.8502 4.7594 -0.7170 12 14 -3.7296 2.7789 -1.1874 13 1 -3.9664 1.7268 -0.1664 14 1 -4.7305 3.8635 -1.0225 15 1 -3.8578 2.1895 -2.5443 16 6 1.8450 1.8564 -2.3933 17 8 1.4108 2.4909 -3.3312 18 6 2.8103 0.7240 -2.6319 19 1 2.9245 0.0215 -1.8062 20 6 4.0450 1.0164 -3.4866 21 6 2.9066 0.1654 -4.0530 22 6 2.0161 0.7997 -5.1233 23 6 3.1563 -1.3362 -4.2070 24 6 3.2223 -1.6924 -5.6935 25 1 -0.3633 0.8033 0.6409 26 1 -0.3633 0.1534 -1.0162 27 1 -0.3633 -0.9567 0.3751 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.9290 2.4717 -0.1150 31 1 3.9941 0.9072 0.7319 32 1 3.8610 0.9543 -1.0425 33 1 0.5410 2.0937 1.4034 34 1 2.0864 1.6169 2.1467 35 1 1.9544 3.1691 1.2855 36 1 0.5845 3.6094 0.1019 37 1 0.6306 4.0250 -1.6282 38 1 -2.6236 5.3396 -0.6397 39 1 4.9717 0.5064 -3.2233 40 1 4.1590 2.0278 -3.8767 41 1 2.1886 0.3053 -6.0793 42 1 2.2550 1.8593 -5.2136 43 1 0.9698 0.6861 -4.8393 44 1 4.0998 -1.5986 -3.7282 45 1 2.3437 -1.8897 -3.7364 46 1 2.2789 -1.4299 -6.1722 47 1 4.0349 -1.1388 -6.1640 48 1 3.3997 -2.7623 -5.8031 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189912656.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:11 Heat of formation + Delta-G solvation = -0.623653 kcal Electronic energy + Delta-G solvation = -24679.027481 eV Core-core repulsion = 21542.592233 eV Total energy + Delta-G solvation = -3136.435248 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.30444 -37.88946 -36.29109 -33.12028 -32.08578 -31.60449 -29.94451 -28.69432 -27.48109 -26.24287 -24.07647 -23.60111 -22.97011 -22.06981 -20.25846 -18.68909 -17.77920 -16.62919 -15.66301 -15.45087 -14.86191 -14.51775 -14.48127 -14.18801 -14.01871 -13.56011 -13.35200 -12.90509 -12.53568 -12.42031 -12.21848 -12.08892 -12.04046 -11.92225 -11.68335 -11.44321 -11.34879 -11.13655 -11.03571 -10.96401 -10.85903 -10.70109 -10.49972 -10.42742 -10.33003 -9.96636 -9.86826 -9.68727 -9.23530 -9.20451 -8.56302 -8.33161 -7.47170 -5.95817 -3.97749 3.25105 3.34922 3.39689 3.43326 3.94977 4.23765 4.50575 4.78284 4.91024 5.02735 5.12694 5.17556 5.33493 5.35217 5.38310 5.40756 5.50647 5.57263 5.72702 5.74688 5.84864 5.92720 5.92876 5.96556 6.04994 6.09739 6.13771 6.16159 6.19801 6.26732 6.32818 6.36726 6.42990 6.45151 6.49938 6.61344 6.66316 6.81923 6.93210 7.19514 7.21113 7.58254 7.73905 8.04130 8.34812 8.59929 9.03319 9.29318 9.66273 11.12360 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016161 B = 0.006513 C = 0.005612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.118485 B = 4298.204912 C = 4987.841323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.135 4.135 3 C 0.167 3.833 4 C -0.183 4.183 5 C -0.150 4.150 6 N -0.584 5.584 7 C 0.241 3.759 8 C -0.520 4.520 9 H 0.070 0.930 10 C 0.060 3.940 11 N -0.897 5.897 12 Si 0.890 3.110 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.278 1.278 16 C 0.539 3.461 17 O -0.536 6.536 18 C -0.194 4.194 19 H 0.133 0.867 20 C -0.153 4.153 21 C -0.097 4.097 22 C -0.110 4.110 23 C -0.086 4.086 24 C -0.150 4.150 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.034 0.966 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.040 0.960 37 H 0.036 0.964 38 H 0.261 0.739 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.050 0.950 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.065 0.935 46 H 0.061 0.939 47 H 0.054 0.946 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.060 -11.561 -0.707 16.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.173 4.173 3 C 0.081 3.919 4 C -0.241 4.241 5 C -0.207 4.207 6 N -0.316 5.316 7 C 0.122 3.878 8 C -0.559 4.559 9 H 0.087 0.913 10 C -0.141 4.141 11 N -0.537 5.537 12 Si 0.718 3.282 13 H -0.203 1.203 14 H -0.214 1.214 15 H -0.203 1.203 16 C 0.326 3.674 17 O -0.414 6.414 18 C -0.214 4.214 19 H 0.150 0.850 20 C -0.190 4.190 21 C -0.097 4.097 22 C -0.167 4.167 23 C -0.123 4.123 24 C -0.207 4.207 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.053 0.947 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.071 0.929 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.080 0.920 47 H 0.073 0.927 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.698 -11.008 -1.144 16.104 hybrid contribution -1.022 -0.302 0.163 1.078 sum 10.675 -11.310 -0.982 15.583 Atomic orbital electron populations 1.22074 0.94291 1.00661 1.03821 1.22167 0.98050 0.95962 1.01142 1.20303 0.91871 0.91818 0.87871 1.22794 0.95482 1.02715 1.03090 1.22110 1.03710 1.00202 0.94652 1.48225 1.42032 1.37521 1.03784 1.19352 0.85346 0.85472 0.97604 1.21718 0.90555 0.95898 1.47726 0.91251 1.24914 0.98953 0.94725 0.95532 1.69932 1.30376 1.03846 1.49550 0.86693 0.84324 0.78517 0.78704 1.20310 1.21384 1.20344 1.19204 0.81313 0.83712 0.83207 1.90644 1.56725 1.52608 1.41450 1.23179 1.00540 1.01732 0.95975 0.84965 1.23172 0.91570 1.01569 1.02716 1.21560 1.00169 0.94108 0.93909 1.21445 0.99056 1.00907 0.95255 1.21071 1.01275 0.92858 0.97142 1.21818 1.02275 1.00375 0.96224 0.90437 0.91575 0.94707 0.91827 0.92124 0.92404 0.92269 0.90150 0.89993 0.92781 0.92138 0.94189 0.94633 0.92946 0.88723 0.88453 0.93094 0.90986 0.92015 0.92045 0.91656 0.91961 0.92657 0.93137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 8.14 37.16 0.30 -2.38 16 2 C -0.14 -2.04 4.78 -26.73 -0.13 -2.16 16 3 C 0.17 2.75 0.71 -131.82 -0.09 2.66 16 4 C -0.18 -2.50 8.09 37.16 0.30 -2.20 16 5 C -0.15 -2.45 6.95 37.16 0.26 -2.19 16 6 N -0.58 -12.18 1.95 -160.18 -0.31 -12.49 16 7 C 0.24 6.15 4.55 -5.19 -0.02 6.12 16 8 C -0.52 -14.18 7.87 -34.44 -0.27 -14.45 16 9 H 0.07 1.87 4.60 -52.49 -0.24 1.62 16 10 C 0.06 1.69 5.46 -17.81 -0.10 1.60 16 11 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 12 Si 0.89 21.91 29.54 -169.99 -5.02 16.88 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 15 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 16 C 0.54 11.28 6.83 -10.98 -0.07 11.20 16 17 O -0.54 -13.34 13.09 5.56 0.07 -13.27 16 18 C -0.19 -3.05 2.99 -91.78 -0.27 -3.33 16 19 H 0.13 1.87 3.36 -51.92 -0.17 1.69 16 20 C -0.15 -2.07 9.02 -26.73 -0.24 -2.31 16 21 C -0.10 -1.39 2.47 -154.51 -0.38 -1.77 16 22 C -0.11 -1.79 7.77 37.16 0.29 -1.50 16 23 C -0.09 -0.98 6.12 -26.73 -0.16 -1.14 16 24 C -0.15 -1.51 8.92 37.16 0.33 -1.18 16 25 H 0.08 1.51 5.00 -51.93 -0.26 1.25 16 26 H 0.07 1.35 6.00 -51.93 -0.31 1.04 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.92 5.06 -51.93 -0.26 0.66 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 1.05 3.58 -51.93 -0.19 0.86 16 33 H 0.08 1.53 5.48 -51.93 -0.28 1.25 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.06 1.03 7.29 -51.93 -0.38 0.65 16 36 H 0.04 1.02 5.34 -51.93 -0.28 0.74 16 37 H 0.04 1.05 7.60 -51.93 -0.39 0.66 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.09 1.02 8.05 -51.93 -0.42 0.61 16 40 H 0.10 1.45 8.05 -51.93 -0.42 1.03 16 41 H 0.05 0.69 5.58 -51.93 -0.29 0.40 16 42 H 0.07 1.32 6.65 -51.93 -0.35 0.97 16 43 H 0.06 1.16 7.74 -51.92 -0.40 0.76 16 44 H 0.06 0.61 7.90 -51.93 -0.41 0.20 16 45 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.06 0.66 6.44 -51.93 -0.33 0.33 16 47 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 48 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 347.02 15.07 5.23 5.23 Total: -1.00 -30.77 347.02 -7.47 -38.23 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -7.91 Total: 4.25 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -0.27 Total: -13.03 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.42 Total: -38.30 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.07 Total: -13.27 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.77 -7.47 -38.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189912656.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.610 kcal (2) G-P(sol) polarization free energy of solvation -30.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds