Wall clock time and date at job start Tue Mar 31 2020 05:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47015 * 2 1 4 4 C 1.53005 * 109.46976 * 184.55334 * 3 2 1 5 5 C 1.52999 * 109.47279 * 64.55372 * 3 2 1 6 6 N 1.46494 * 109.47140 * 304.55277 * 3 2 1 7 7 C 1.46502 * 119.99920 * 110.63311 * 6 3 2 8 8 C 1.50699 * 109.46729 * 263.02261 * 7 6 3 9 9 H 1.07996 * 120.00188 * 2.73863 * 8 7 6 10 10 C 1.37886 * 119.99978 * 182.73124 * 8 7 6 11 11 N 1.31518 * 119.99726 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00109 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47022 * 60.00497 * 12 10 8 14 14 H 1.48503 * 109.47122 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.47350 * 300.00697 * 12 10 8 16 16 C 1.34783 * 120.00083 * 290.62853 * 6 3 2 17 17 O 1.21274 * 119.99703 * 183.08923 * 16 6 3 18 18 C 1.50696 * 119.99914 * 3.09340 * 16 6 3 19 19 H 1.09011 * 115.56001 * 17.58127 * 18 16 6 20 20 C 1.52991 * 117.49963 * 231.89305 * 18 16 6 21 21 C 1.53001 * 117.50025 * 163.26703 * 18 16 6 22 22 C 1.52997 * 117.49720 * 0.02562 * 21 18 16 23 23 C 1.52998 * 117.52123 * 214.96907 * 21 18 16 24 24 C 1.53002 * 109.47106 * 180.11786 * 23 21 18 25 25 H 1.09001 * 109.47049 * 321.41572 * 1 2 3 26 26 H 1.09002 * 109.46841 * 81.41639 * 1 2 3 27 27 H 1.08992 * 109.47324 * 201.40955 * 1 2 3 28 28 H 1.08994 * 109.47546 * 239.99606 * 2 1 3 29 29 H 1.09000 * 109.47054 * 119.99712 * 2 1 3 30 30 H 1.08999 * 109.46927 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.46840 * 299.99904 * 4 3 2 32 32 H 1.09000 * 109.47389 * 59.99904 * 4 3 2 33 33 H 1.08993 * 109.47116 * 302.24352 * 5 3 2 34 34 H 1.09005 * 109.47098 * 62.24041 * 5 3 2 35 35 H 1.08999 * 109.47280 * 182.23991 * 5 3 2 36 36 H 1.08996 * 109.47501 * 23.02372 * 7 6 3 37 37 H 1.08998 * 109.47147 * 143.02660 * 7 6 3 38 38 H 0.97000 * 119.99825 * 179.97438 * 11 10 8 39 39 H 1.09001 * 117.49930 * 145.02045 * 20 18 16 40 40 H 1.09000 * 117.50003 * 359.97438 * 20 18 16 41 41 H 1.09000 * 109.47392 * 180.02562 * 22 21 18 42 42 H 1.09000 * 109.47669 * 60.00494 * 22 21 18 43 43 H 1.09009 * 109.46658 * 300.00641 * 22 21 18 44 44 H 1.09002 * 109.47088 * 300.12119 * 23 21 18 45 45 H 1.09006 * 109.46676 * 60.11950 * 23 21 18 46 46 H 1.09000 * 109.47048 * 300.00804 * 24 23 21 47 47 H 1.09004 * 109.46757 * 60.00267 * 24 23 21 48 48 H 1.08998 * 109.46570 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5657 1.4440 -0.1145 5 6 1.6256 2.1300 1.3025 6 7 1.4642 2.1640 -1.1375 7 6 0.4745 3.2200 -0.9101 8 6 -0.9118 2.6547 -1.0829 9 1 -1.0440 1.6037 -1.2930 10 6 -2.0113 3.4794 -0.9725 11 7 -1.8502 4.7594 -0.7170 12 14 -3.7296 2.7789 -1.1874 13 1 -3.9664 1.7268 -0.1664 14 1 -4.7305 3.8635 -1.0225 15 1 -3.8578 2.1895 -2.5443 16 6 1.8450 1.8564 -2.3933 17 8 1.4108 2.4909 -3.3312 18 6 2.8103 0.7240 -2.6319 19 1 2.9245 0.0215 -1.8062 20 6 4.0450 1.0164 -3.4866 21 6 2.9066 0.1654 -4.0530 22 6 2.0161 0.7997 -5.1233 23 6 3.1563 -1.3362 -4.2070 24 6 3.2223 -1.6924 -5.6935 25 1 -0.3633 0.8033 0.6409 26 1 -0.3633 0.1534 -1.0162 27 1 -0.3633 -0.9567 0.3751 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.9290 2.4717 -0.1150 31 1 3.9941 0.9072 0.7319 32 1 3.8610 0.9543 -1.0425 33 1 0.5410 2.0937 1.4034 34 1 2.0864 1.6169 2.1467 35 1 1.9544 3.1691 1.2855 36 1 0.5845 3.6094 0.1019 37 1 0.6306 4.0250 -1.6282 38 1 -2.6236 5.3396 -0.6397 39 1 4.9717 0.5064 -3.2233 40 1 4.1590 2.0278 -3.8767 41 1 2.1886 0.3053 -6.0793 42 1 2.2550 1.8593 -5.2136 43 1 0.9698 0.6861 -4.8393 44 1 4.0998 -1.5986 -3.7282 45 1 2.3437 -1.8897 -3.7364 46 1 2.2789 -1.4299 -6.1722 47 1 4.0349 -1.1388 -6.1640 48 1 3.3997 -2.7623 -5.8031 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189912656.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:10 Heat of formation + Delta-G solvation = -17.900819 kcal Electronic energy + Delta-G solvation = -24679.776675 eV Core-core repulsion = 21542.592233 eV Total energy + Delta-G solvation = -3137.184442 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.74860 -39.18844 -37.84030 -35.13184 -33.31708 -33.11664 -31.34106 -30.19159 -28.88813 -27.84348 -25.51886 -24.70468 -24.26698 -23.82755 -21.65914 -19.83281 -19.27998 -18.65104 -17.24898 -16.89994 -16.38268 -16.16869 -15.81932 -15.46299 -15.39901 -14.89896 -14.81820 -14.33072 -14.06918 -13.79431 -13.68511 -13.48097 -13.26670 -13.14390 -13.00380 -12.90300 -12.84569 -12.63531 -12.56516 -12.39761 -12.28248 -12.05996 -12.01752 -11.86636 -11.72296 -11.61721 -11.22902 -11.07203 -10.83815 -10.56501 -10.45338 -10.17607 -9.24014 -8.14362 -6.23922 1.33225 1.37251 1.43420 1.78093 2.33447 2.48357 2.96924 3.14899 3.60698 3.72853 3.85254 3.91184 4.10313 4.11304 4.15831 4.29317 4.45177 4.52676 4.58551 4.69485 4.78714 4.82742 4.85637 4.86160 4.89939 4.93009 4.98023 4.99421 5.06149 5.15107 5.16155 5.21389 5.22729 5.24709 5.28332 5.35800 5.38425 5.39660 5.46506 5.48942 5.64931 5.74232 5.80674 6.03144 6.20524 6.82804 6.99105 7.39590 7.67652 8.92553 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016161 B = 0.006513 C = 0.005612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.118485 B = 4298.204912 C = 4987.841323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.128 4.128 3 C 0.156 3.844 4 C -0.176 4.176 5 C -0.147 4.147 6 N -0.588 5.588 7 C 0.259 3.741 8 C -0.521 4.521 9 H 0.071 0.929 10 C 0.004 3.996 11 N -0.934 5.934 12 Si 0.951 3.049 13 H -0.259 1.259 14 H -0.283 1.283 15 H -0.283 1.283 16 C 0.525 3.475 17 O -0.593 6.593 18 C -0.201 4.201 19 H 0.160 0.840 20 C -0.132 4.132 21 C -0.098 4.098 22 C -0.105 4.105 23 C -0.080 4.080 24 C -0.150 4.150 25 H 0.052 0.948 26 H 0.027 0.973 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.044 0.956 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.051 0.949 34 H 0.095 0.905 35 H 0.042 0.958 36 H 0.036 0.964 37 H -0.020 1.020 38 H 0.261 0.739 39 H 0.140 0.860 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.040 0.960 43 H 0.024 0.976 44 H 0.090 0.910 45 H 0.064 0.936 46 H 0.048 0.952 47 H 0.060 0.940 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.340 -15.391 0.279 21.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.166 4.166 3 C 0.072 3.928 4 C -0.233 4.233 5 C -0.204 4.204 6 N -0.319 5.319 7 C 0.138 3.862 8 C -0.560 4.560 9 H 0.089 0.911 10 C -0.193 4.193 11 N -0.575 5.575 12 Si 0.777 3.223 13 H -0.184 1.184 14 H -0.208 1.208 15 H -0.209 1.209 16 C 0.315 3.685 17 O -0.474 6.474 18 C -0.221 4.221 19 H 0.177 0.823 20 C -0.169 4.169 21 C -0.099 4.099 22 C -0.162 4.162 23 C -0.117 4.117 24 C -0.207 4.207 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.120 0.880 30 H 0.063 0.937 31 H 0.116 0.884 32 H 0.108 0.892 33 H 0.070 0.930 34 H 0.114 0.886 35 H 0.061 0.939 36 H 0.053 0.947 37 H -0.002 1.002 38 H 0.070 0.930 39 H 0.158 0.842 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.060 0.940 43 H 0.043 0.957 44 H 0.108 0.892 45 H 0.082 0.918 46 H 0.067 0.933 47 H 0.079 0.921 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 14.004 -14.875 -0.124 20.430 hybrid contribution -1.724 0.938 -0.163 1.969 sum 12.280 -13.937 -0.287 18.577 Atomic orbital electron populations 1.21957 0.96648 1.01068 1.00865 1.22156 0.95807 0.95002 1.03626 1.20753 0.93993 0.92226 0.85873 1.22743 0.92545 1.02739 1.05322 1.22076 1.02011 0.99896 0.96399 1.48257 1.41137 1.36781 1.05695 1.18783 0.86398 0.85661 0.95376 1.22018 0.91493 0.95973 1.46505 0.91090 1.25756 1.02982 0.95055 0.95529 1.70066 1.31350 1.05103 1.50978 0.85709 0.79750 0.78272 0.78575 1.18374 1.20828 1.20893 1.20207 0.81572 0.84442 0.82317 1.90620 1.58920 1.54809 1.43089 1.23080 1.00740 1.00418 0.97858 0.82291 1.23296 0.92316 1.00899 1.00389 1.21723 0.99936 0.96406 0.91801 1.21335 0.97455 0.99668 0.97733 1.21110 1.02657 0.89738 0.98241 1.21815 1.01790 1.01801 0.95306 0.92882 0.95373 0.92143 0.90650 0.88028 0.93725 0.88421 0.89152 0.93009 0.88633 0.93908 0.94652 1.00230 0.92994 0.84220 0.90499 0.90408 0.94045 0.95661 0.89157 0.91781 0.93308 0.92139 0.91114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.08 8.14 71.98 0.59 -4.49 16 2 C -0.13 -3.44 4.78 30.59 0.15 -3.30 16 3 C 0.16 4.88 0.71 3.61 0.00 4.88 16 4 C -0.18 -4.18 8.09 71.98 0.58 -3.59 16 5 C -0.15 -4.68 6.95 71.98 0.50 -4.18 16 6 N -0.59 -25.36 1.95 -779.09 -1.52 -26.88 16 7 C 0.26 14.14 4.55 85.63 0.39 14.53 16 8 C -0.52 -29.95 7.87 25.60 0.20 -29.75 16 9 H 0.07 4.00 4.60 -2.91 -0.01 3.99 16 10 C 0.00 0.26 5.46 84.66 0.46 0.72 16 11 N -0.93 -58.04 13.29 21.45 0.28 -57.76 16 12 Si 0.95 46.40 29.54 68.60 2.03 48.43 16 13 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 14 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 15 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16 16 C 0.52 22.75 6.83 87.65 0.60 23.34 16 17 O -0.59 -31.73 13.09 -3.01 -0.04 -31.77 16 18 C -0.20 -5.98 2.99 -11.54 -0.03 -6.02 16 19 H 0.16 3.84 3.36 -2.38 -0.01 3.83 16 20 C -0.13 -3.22 9.02 30.59 0.28 -2.94 16 21 C -0.10 -2.63 2.47 -52.18 -0.13 -2.76 16 22 C -0.11 -3.52 7.77 71.98 0.56 -2.97 16 23 C -0.08 -1.51 6.12 30.59 0.19 -1.32 16 24 C -0.15 -2.53 8.92 71.98 0.64 -1.88 16 25 H 0.05 2.07 5.00 -2.39 -0.01 2.06 16 26 H 0.03 1.15 6.00 -2.39 -0.01 1.14 16 27 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.08 1.87 5.06 -2.39 -0.01 1.86 16 29 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.09 1.97 3.58 -2.39 -0.01 1.96 16 33 H 0.05 1.97 5.48 -2.39 -0.01 1.95 16 34 H 0.10 2.22 8.14 -2.38 -0.02 2.20 16 35 H 0.04 1.48 7.29 -2.39 -0.02 1.46 16 36 H 0.04 1.94 5.34 -2.39 -0.01 1.93 16 37 H -0.02 -1.32 7.60 -2.39 -0.02 -1.34 16 38 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 39 H 0.14 2.21 8.05 -2.39 -0.02 2.20 16 40 H 0.08 2.23 8.05 -2.39 -0.02 2.21 16 41 H 0.08 2.11 5.58 -2.39 -0.01 2.09 16 42 H 0.04 1.61 6.65 -2.39 -0.02 1.59 16 43 H 0.02 0.99 7.74 -2.38 -0.02 0.98 16 44 H 0.09 1.24 7.90 -2.39 -0.02 1.22 16 45 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 46 H 0.05 0.94 6.44 -2.39 -0.02 0.93 16 47 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -75.06 347.02 6.67 -68.39 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: 0.94 Total: 19.31 kcal Atomic # 6 Polarization: -24.69 SS G_CDS: 4.97 Total: -19.72 kcal Atomic # 7 Polarization: -83.40 SS G_CDS: -1.24 Total: -84.64 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -0.04 Total: -31.77 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -75.06 6.67 -68.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189912656.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.489 kcal (2) G-P(sol) polarization free energy of solvation -75.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds