Wall clock time and date at job start Tue Mar 31 2020 05:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47012 * 2 1 4 4 C 1.53002 * 109.47066 * 293.94585 * 3 2 1 5 5 C 1.53004 * 109.47012 * 173.94888 * 3 2 1 6 6 N 1.46498 * 109.47267 * 53.94857 * 3 2 1 7 7 C 1.46499 * 120.00218 * 228.62975 * 6 3 2 8 8 C 1.50692 * 109.47029 * 266.41766 * 7 6 3 9 9 H 1.08003 * 120.00508 * 0.02562 * 8 7 6 10 10 C 1.37883 * 120.00132 * 179.97438 * 8 7 6 11 11 N 1.31512 * 119.99742 * 359.97438 * 10 8 7 12 12 Si 1.86793 * 120.00332 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47085 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47257 * 119.99924 * 12 10 8 15 15 H 1.48498 * 109.47028 * 240.00197 * 12 10 8 16 16 C 1.34780 * 119.99965 * 48.62582 * 6 3 2 17 17 O 1.21280 * 119.99947 * 184.08804 * 16 6 3 18 18 C 1.50704 * 120.00003 * 4.09049 * 16 6 3 19 19 H 1.09007 * 115.55922 * 21.72008 * 18 16 6 20 20 C 1.53006 * 117.49724 * 236.03763 * 18 16 6 21 21 C 1.52994 * 117.49726 * 167.41440 * 18 16 6 22 22 C 1.53008 * 117.49530 * 214.97756 * 21 18 16 23 23 C 1.52992 * 117.52392 * 0.02562 * 21 18 16 24 24 C 1.52994 * 109.47792 * 179.88402 * 23 21 18 25 25 H 1.09001 * 109.47234 * 185.44662 * 1 2 3 26 26 H 1.09004 * 109.46811 * 305.43889 * 1 2 3 27 27 H 1.08993 * 109.47631 * 65.43995 * 1 2 3 28 28 H 1.09006 * 109.47057 * 240.00592 * 2 1 3 29 29 H 1.08999 * 109.47787 * 120.00103 * 2 1 3 30 30 H 1.09003 * 109.46992 * 184.46503 * 4 3 2 31 31 H 1.08995 * 109.47201 * 304.46754 * 4 3 2 32 32 H 1.09004 * 109.46722 * 64.47079 * 4 3 2 33 33 H 1.08998 * 109.47065 * 303.65890 * 5 3 2 34 34 H 1.08994 * 109.47141 * 63.65982 * 5 3 2 35 35 H 1.09004 * 109.46770 * 183.66175 * 5 3 2 36 36 H 1.09001 * 109.46615 * 26.42016 * 7 6 3 37 37 H 1.08999 * 109.47258 * 146.41559 * 7 6 3 38 38 H 0.97003 * 120.00030 * 179.97438 * 11 10 8 39 39 H 1.08996 * 117.49542 * 145.01879 * 20 18 16 40 40 H 1.09001 * 117.51750 * 359.97438 * 20 18 16 41 41 H 1.09002 * 109.46798 * 299.98291 * 22 21 18 42 42 H 1.08997 * 109.47196 * 59.98599 * 22 21 18 43 43 H 1.08997 * 109.46947 * 179.97438 * 22 21 18 44 44 H 1.09007 * 109.47176 * 299.88811 * 23 21 18 45 45 H 1.09000 * 109.46950 * 59.87771 * 23 21 18 46 46 H 1.09007 * 109.47094 * 300.00460 * 24 23 21 47 47 H 1.09000 * 109.46865 * 59.99687 * 24 23 21 48 48 H 1.08995 * 109.47796 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6579 2.1185 -1.3184 5 6 3.5624 1.4452 0.1521 6 7 1.4364 2.1739 1.1167 7 6 0.8274 3.4867 0.8887 8 6 1.8433 4.5658 1.1614 9 1 2.8427 4.3004 1.4730 10 6 1.4972 5.8921 1.0122 11 7 0.2806 6.2154 0.6315 12 14 2.7566 7.2297 1.3496 13 1 4.0410 6.6080 1.7605 14 1 2.9666 8.0337 0.1188 15 1 2.2632 8.1110 2.4382 16 6 1.4412 1.6390 2.3538 17 8 0.8770 2.2093 3.2633 18 6 2.1478 0.3321 2.6068 19 1 2.9182 0.0661 1.8830 20 6 1.3289 -0.8070 3.2177 21 6 2.3750 -0.0776 4.0632 22 6 3.6663 -0.8294 4.3924 23 6 1.8672 0.8700 5.1517 24 6 2.1863 0.2835 6.5283 25 1 -0.3634 -1.0230 0.0975 26 1 -0.3633 0.5959 0.8373 27 1 -0.3634 0.4271 -0.9346 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 2.0888 3.1192 -1.3518 31 1 2.0403 1.5302 -2.1525 32 1 0.5724 2.1878 -1.3899 33 1 3.8379 0.9067 1.0588 34 1 4.0146 0.9578 -0.7116 35 1 3.9192 2.4731 0.2174 36 1 0.4917 3.5567 -0.1459 37 1 -0.0248 3.6128 1.5565 38 1 0.0369 7.1484 0.5268 39 1 1.5607 -1.8222 2.8959 40 1 0.2793 -0.6112 3.4371 41 1 3.7010 -1.7584 3.8232 42 1 4.5241 -0.2103 4.1299 43 1 3.6938 -1.0550 5.4584 44 1 2.3562 1.8386 5.0473 45 1 0.7891 0.9947 5.0509 46 1 1.6973 -0.6852 6.6328 47 1 3.2645 0.1589 6.6290 48 1 1.8242 0.9584 7.3037 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189912676.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:13 Heat of formation + Delta-G solvation = -7.143267 kcal Electronic energy + Delta-G solvation = -24625.144221 eV Core-core repulsion = 21488.426261 eV Total energy + Delta-G solvation = -3136.717959 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.36075 -37.81604 -36.27069 -33.23345 -31.97452 -31.53811 -29.98945 -28.55478 -27.75778 -26.41372 -23.91010 -23.54207 -23.10411 -22.00296 -20.25151 -18.73589 -17.80895 -16.44188 -15.81587 -15.53953 -14.75785 -14.55131 -14.30530 -14.20370 -13.97566 -13.63414 -13.20821 -12.97149 -12.81563 -12.70648 -12.22229 -12.07609 -11.90624 -11.83215 -11.66521 -11.58295 -11.40332 -11.15739 -11.07055 -10.98492 -10.88156 -10.68300 -10.63800 -10.42009 -10.36249 -10.11495 -9.94500 -9.62190 -9.47367 -9.19987 -8.58228 -8.37281 -7.50136 -5.99440 -4.02656 3.25079 3.31165 3.39251 3.43391 3.95010 4.21958 4.48423 4.84182 4.90047 5.05666 5.10788 5.21480 5.28553 5.34964 5.41898 5.52420 5.56531 5.61658 5.69634 5.75724 5.83364 5.86403 5.89184 5.92675 5.96465 6.04405 6.07196 6.14391 6.16499 6.22181 6.29878 6.35305 6.39621 6.45033 6.45792 6.59693 6.62920 6.75464 6.85712 6.92733 7.21667 7.54323 7.69207 7.99003 8.31506 8.58716 8.98361 9.26316 9.62246 11.08380 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.014588 B = 0.006855 C = 0.005452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.921952 B = 4083.496878 C = 5134.746911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.152 4.152 3 C 0.169 3.831 4 C -0.147 4.147 5 C -0.167 4.167 6 N -0.583 5.583 7 C 0.241 3.759 8 C -0.517 4.517 9 H 0.056 0.944 10 C 0.060 3.940 11 N -0.896 5.896 12 Si 0.893 3.107 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.284 1.284 16 C 0.540 3.460 17 O -0.539 6.539 18 C -0.191 4.191 19 H 0.131 0.869 20 C -0.151 4.151 21 C -0.098 4.098 22 C -0.121 4.121 23 C -0.078 4.078 24 C -0.152 4.152 25 H 0.045 0.955 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.042 0.958 37 H 0.037 0.963 38 H 0.261 0.739 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.053 0.947 42 H 0.058 0.942 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.048 0.952 47 H 0.052 0.948 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.893 -15.875 0.963 16.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.190 4.190 3 C 0.083 3.917 4 C -0.204 4.204 5 C -0.225 4.225 6 N -0.315 5.315 7 C 0.122 3.878 8 C -0.556 4.556 9 H 0.074 0.926 10 C -0.141 4.141 11 N -0.535 5.535 12 Si 0.721 3.279 13 H -0.199 1.199 14 H -0.211 1.211 15 H -0.210 1.210 16 C 0.327 3.673 17 O -0.418 6.418 18 C -0.211 4.211 19 H 0.148 0.852 20 C -0.188 4.188 21 C -0.099 4.099 22 C -0.178 4.178 23 C -0.115 4.115 24 C -0.209 4.209 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.097 0.903 46 H 0.067 0.933 47 H 0.071 0.929 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.461 -15.375 1.371 16.068 hybrid contribution 0.727 0.903 -0.098 1.163 sum 5.188 -14.473 1.273 15.427 Atomic orbital electron populations 1.21708 0.95562 1.00653 1.02428 1.22476 0.97072 0.96474 1.02968 1.20263 0.92255 0.91022 0.88138 1.22056 1.02228 1.01748 0.94384 1.22472 0.95653 1.03317 1.01026 1.48213 1.56815 1.20454 1.05974 1.19348 0.93996 0.76709 0.97720 1.21477 0.97985 0.90779 1.45315 0.92579 1.24910 0.95338 0.98516 0.95353 1.69940 1.18145 1.17829 1.47618 0.86521 0.81634 0.81929 0.77819 1.19878 1.21070 1.20993 1.19221 0.80365 0.84835 0.82849 1.90641 1.45495 1.62971 1.42656 1.23115 1.04127 0.96080 0.97796 0.85151 1.23159 0.97513 0.95089 1.03073 1.21579 0.96795 1.00177 0.91308 1.21491 0.95255 0.98865 1.02165 1.21069 1.02431 0.97139 0.90861 1.21921 1.00869 1.00476 0.97668 0.93551 0.92195 0.92884 0.91773 0.89688 0.90491 0.92839 0.91871 0.92381 0.92500 0.91106 0.94036 0.94462 0.92929 0.88713 0.88543 0.92788 0.92306 0.91225 0.91169 0.90296 0.93255 0.92905 0.93130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.38 37.16 0.35 -1.74 16 2 C -0.15 -2.07 4.40 -26.73 -0.12 -2.19 16 3 C 0.17 2.80 0.70 -131.81 -0.09 2.71 16 4 C -0.15 -2.43 6.80 37.16 0.25 -2.18 16 5 C -0.17 -2.54 8.46 37.16 0.31 -2.23 16 6 N -0.58 -12.19 1.61 -160.18 -0.26 -12.44 16 7 C 0.24 6.22 4.58 -5.20 -0.02 6.19 16 8 C -0.52 -14.51 9.36 -34.44 -0.32 -14.83 16 9 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 10 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 11 N -0.90 -26.60 13.29 55.43 0.74 -25.87 16 12 Si 0.89 22.05 29.54 -169.99 -5.02 17.02 16 13 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 16 C 0.54 11.23 5.97 -10.98 -0.07 11.17 16 17 O -0.54 -13.29 12.92 5.56 0.07 -13.22 16 18 C -0.19 -2.99 3.06 -91.77 -0.28 -3.27 16 19 H 0.13 1.85 3.44 -51.92 -0.18 1.67 16 20 C -0.15 -2.02 8.91 -26.73 -0.24 -2.25 16 21 C -0.10 -1.40 2.47 -154.51 -0.38 -1.78 16 22 C -0.12 -1.36 9.50 37.16 0.35 -1.01 16 23 C -0.08 -1.25 4.38 -26.74 -0.12 -1.37 16 24 C -0.15 -1.91 8.92 37.15 0.33 -1.58 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 1.03 6.54 -51.93 -0.34 0.69 16 27 H 0.05 0.75 6.97 -51.93 -0.36 0.38 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.09 1.10 3.57 -51.93 -0.19 0.92 16 30 H 0.08 1.47 7.60 -51.93 -0.39 1.08 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 1.09 6.01 -51.93 -0.31 0.78 16 33 H 0.06 0.83 5.14 -51.93 -0.27 0.57 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.04 1.07 5.44 -51.93 -0.28 0.79 16 37 H 0.04 1.10 7.48 -51.93 -0.39 0.72 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.09 1.02 8.05 -51.93 -0.42 0.60 16 40 H 0.10 1.41 8.05 -51.93 -0.42 0.99 16 41 H 0.05 0.52 7.90 -51.93 -0.41 0.11 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.71 5.58 -51.93 -0.29 0.42 16 44 H 0.07 1.33 7.63 -51.93 -0.40 0.93 16 45 H 0.08 1.44 6.71 -51.93 -0.35 1.09 16 46 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.05 0.60 6.44 -51.93 -0.33 0.26 16 48 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 354.79 15.07 5.35 5.35 Total: -1.00 -31.13 354.79 -7.51 -38.65 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -8.25 Total: 3.24 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -0.14 Total: -12.73 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.48 Total: -38.31 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.07 Total: -13.22 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.13 -7.51 -38.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189912676.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.503 kcal (2) G-P(sol) polarization free energy of solvation -31.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds