Wall clock time and date at job start Tue Mar 31 2020 06:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46789 * 2 1 4 4 C 1.53000 * 109.46962 * 173.59368 * 3 2 1 5 5 C 1.53004 * 109.47230 * 195.27395 * 4 3 2 6 6 C 1.53008 * 109.47244 * 293.59315 * 3 2 1 7 7 N 1.46902 * 109.46770 * 168.23149 * 6 3 2 8 8 C 1.46900 * 111.00075 * 256.01515 * 7 6 3 9 9 C 1.50701 * 109.46605 * 59.04224 * 8 7 6 10 10 H 1.08000 * 120.00550 * 353.65689 * 9 8 7 11 11 C 1.37882 * 119.99765 * 173.65149 * 9 8 7 12 12 N 1.31521 * 119.99900 * 5.09186 * 11 9 8 13 13 Si 1.86794 * 120.00100 * 185.08657 * 11 9 8 14 14 H 1.48498 * 109.47098 * 60.00107 * 13 11 9 15 15 H 1.48506 * 109.47286 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47270 * 300.00188 * 13 11 9 17 17 C 1.46902 * 110.99622 * 132.06352 * 7 6 3 18 18 C 1.53000 * 109.47584 * 287.64829 * 17 7 6 19 19 H 1.09004 * 109.69674 * 308.61759 * 18 17 7 20 20 C 1.53499 * 109.70931 * 188.03509 * 18 17 7 21 21 C 1.53257 * 108.15794 * 177.86670 * 20 18 17 22 22 C 1.50446 * 109.43870 * 46.82451 * 21 20 18 23 23 C 1.30684 * 122.49379 * 342.49785 * 22 21 20 24 24 O 1.35132 * 123.34826 * 0.45192 * 23 22 21 25 25 H 1.08998 * 109.47104 * 65.71181 * 1 2 3 26 26 H 1.08997 * 109.46556 * 185.71021 * 1 2 3 27 27 H 1.09002 * 109.47049 * 305.70959 * 1 2 3 28 28 H 1.08997 * 109.46857 * 240.00547 * 2 1 3 29 29 H 1.08998 * 109.47262 * 119.99988 * 2 1 3 30 30 H 1.09000 * 109.47398 * 53.59562 * 3 2 1 31 31 H 1.08997 * 109.47460 * 315.27847 * 4 3 2 32 32 H 1.09000 * 109.46953 * 75.28100 * 4 3 2 33 33 H 1.08995 * 109.46987 * 321.53971 * 5 4 3 34 34 H 1.09005 * 109.46735 * 81.53553 * 5 4 3 35 35 H 1.08996 * 109.47397 * 201.53036 * 5 4 3 36 36 H 1.09000 * 109.46862 * 48.23692 * 6 3 2 37 37 H 1.08992 * 109.47012 * 288.23375 * 6 3 2 38 38 H 1.09000 * 109.47204 * 179.03781 * 8 7 6 39 39 H 1.08997 * 109.47064 * 299.04431 * 8 7 6 40 40 H 0.96995 * 119.99903 * 179.97438 * 12 11 9 41 41 H 1.08999 * 109.47239 * 167.64319 * 17 7 6 42 42 H 1.09005 * 109.46898 * 47.64549 * 17 7 6 43 43 H 1.09000 * 109.72327 * 58.20284 * 20 18 17 44 44 H 1.08996 * 109.76509 * 297.55683 * 20 18 17 45 45 H 1.09001 * 109.47581 * 286.83594 * 21 20 18 46 46 H 1.08998 * 109.48262 * 166.81864 * 21 20 18 47 47 H 1.08001 * 118.75168 * 162.51994 * 22 21 20 48 48 H 1.07998 * 118.32080 * 180.18049 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5615 1.4456 0.1610 5 6 4.0314 2.8513 0.5405 6 6 1.6656 2.1158 -1.3220 7 7 1.8984 3.5625 -1.2177 8 6 0.6321 4.2890 -1.0538 9 6 -0.0691 3.8022 0.1881 10 1 0.3279 2.9619 0.7382 11 6 -1.2176 4.4297 0.6221 12 7 -1.7569 5.3873 -0.1004 13 14 -2.0075 3.9199 2.2362 14 1 -1.0436 4.1279 3.3465 15 1 -3.2219 4.7408 2.4741 16 1 -2.3853 2.4852 2.1710 17 6 2.6445 4.0608 -2.3809 18 6 4.0982 3.5917 -2.2937 19 1 4.5074 3.8436 -1.3153 20 6 4.9279 4.2703 -3.3924 21 6 6.3842 3.8179 -3.2392 22 6 6.4283 2.3252 -3.0573 23 6 5.3781 1.6289 -2.7105 24 8 4.1622 2.1768 -2.4931 25 1 -0.3633 0.4227 -0.9367 26 1 -0.3632 -1.0226 0.1022 27 1 -0.3633 0.5998 0.8345 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.5861 1.9884 0.8271 31 1 3.8454 0.7435 0.9449 32 1 4.0268 1.1484 -0.7789 33 1 3.4468 3.5901 -0.0076 34 1 3.8962 3.0028 1.6115 35 1 5.0859 2.9624 0.2882 36 1 0.6132 1.9318 -1.5382 37 1 2.2785 1.7061 -2.1247 38 1 0.8347 5.3561 -0.9620 39 1 -0.0027 4.1130 -1.9222 40 1 -2.5650 5.8285 0.2048 41 1 2.6143 5.1503 -2.3924 42 1 2.1925 3.6752 -3.2948 43 1 4.8658 5.3532 -3.2844 44 1 4.5525 3.9763 -4.3725 45 1 6.8259 4.3033 -2.3689 46 1 6.9458 4.0919 -4.1323 47 1 7.3633 1.8095 -3.2190 48 1 5.4867 0.5605 -2.5960 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193881366.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:04 Heat of formation + Delta-G solvation = -27.201826 kcal Electronic energy + Delta-G solvation = -24646.038391 eV Core-core repulsion = 21508.450627 eV Total energy + Delta-G solvation = -3137.587764 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.16179 -37.63715 -34.83702 -33.74816 -32.78230 -31.44528 -31.29647 -27.81281 -27.33264 -25.45759 -24.12829 -23.56543 -22.13009 -21.24499 -20.24428 -19.32957 -18.69052 -16.81951 -16.37734 -15.77484 -15.15604 -14.91896 -14.41920 -14.04671 -13.97091 -13.72010 -13.18000 -13.12828 -12.88102 -12.61664 -12.48353 -12.39489 -12.06485 -11.83027 -11.61007 -11.37042 -11.19353 -10.94273 -10.86538 -10.72529 -10.68491 -10.65642 -10.53902 -10.28523 -10.09231 -9.92012 -9.62767 -9.54103 -9.21477 -8.78586 -8.39362 -8.18194 -7.04788 -5.99325 -3.98183 2.44594 3.35163 3.39566 3.42652 3.67873 4.43926 4.70347 4.87101 5.02240 5.20001 5.35549 5.38609 5.48604 5.52333 5.60761 5.65799 5.71883 5.74024 5.83055 5.90086 5.94928 6.04793 6.11981 6.14517 6.17328 6.26289 6.35758 6.38109 6.46684 6.50382 6.57018 6.63084 6.69951 6.76681 6.78177 6.82112 6.94520 7.06999 7.23254 7.30770 7.34912 7.58472 7.86168 7.97705 8.11882 8.29420 8.60081 9.10768 9.65471 11.12143 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.020114 B = 0.005871 C = 0.005048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.705148 B = 4768.050636 C = 5544.960803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C -0.082 4.082 4 C -0.111 4.111 5 C -0.174 4.174 6 C 0.069 3.931 7 N -0.530 5.530 8 C 0.192 3.808 9 C -0.507 4.507 10 H 0.075 0.925 11 C 0.057 3.943 12 N -0.900 5.900 13 Si 0.889 3.111 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.277 1.277 17 C 0.059 3.941 18 C 0.080 3.920 19 H 0.097 0.903 20 C -0.157 4.157 21 C -0.075 4.075 22 C -0.298 4.298 23 C 0.063 3.937 24 O -0.301 6.301 25 H 0.058 0.942 26 H 0.038 0.962 27 H 0.058 0.942 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.087 0.913 31 H 0.032 0.968 32 H 0.068 0.932 33 H 0.118 0.882 34 H 0.034 0.966 35 H 0.025 0.975 36 H 0.048 0.952 37 H 0.063 0.937 38 H 0.030 0.970 39 H -0.014 1.014 40 H 0.260 0.740 41 H 0.083 0.917 42 H 0.033 0.967 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.067 0.933 47 H 0.112 0.888 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.241 -6.322 -4.940 15.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.101 4.101 4 C -0.148 4.148 5 C -0.231 4.231 6 C -0.058 4.058 7 N -0.253 5.253 8 C 0.067 3.933 9 C -0.545 4.545 10 H 0.093 0.907 11 C -0.144 4.144 12 N -0.539 5.539 13 Si 0.717 3.283 14 H -0.202 1.202 15 H -0.215 1.215 16 H -0.202 1.202 17 C -0.070 4.070 18 C 0.024 3.976 19 H 0.115 0.885 20 C -0.195 4.195 21 C -0.113 4.113 22 C -0.318 4.318 23 C 0.000 4.000 24 O -0.215 6.215 25 H 0.077 0.923 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.106 0.894 31 H 0.051 0.949 32 H 0.086 0.914 33 H 0.136 0.864 34 H 0.053 0.947 35 H 0.044 0.956 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.048 0.952 39 H 0.004 0.996 40 H 0.069 0.931 41 H 0.102 0.898 42 H 0.051 0.949 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.130 0.870 48 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 13.147 -6.181 -4.518 15.214 hybrid contribution -0.686 -0.232 0.191 0.749 sum 12.461 -6.414 -4.327 14.667 Atomic orbital electron populations 1.21795 0.96008 0.99972 1.02975 1.21528 0.95845 0.97504 1.00359 1.21342 0.94924 0.93940 0.99890 1.21602 0.96121 0.96660 1.00397 1.22419 0.99211 1.00233 1.01227 1.22206 0.99501 0.87803 0.96328 1.62023 1.23472 1.04236 1.35616 1.19827 0.83492 0.93902 0.96054 1.21358 1.07942 1.15692 1.09491 0.90748 1.24951 0.97066 0.95323 0.97076 1.69958 1.20992 1.25221 1.37772 0.86696 0.78616 0.78489 0.84459 1.20216 1.21527 1.20225 1.22176 0.91205 0.99751 0.93840 1.23087 0.97163 0.78406 0.98943 0.88525 1.22277 0.95878 1.01324 0.99997 1.20262 0.96275 0.93262 1.01462 1.22372 0.99456 0.96807 1.13180 1.21962 0.85043 0.97752 0.95285 1.86106 1.26696 1.23761 1.84930 0.92314 0.94257 0.92305 0.93108 0.93144 0.89449 0.94897 0.91351 0.86416 0.94688 0.95627 0.93332 0.91841 0.95201 0.99605 0.93053 0.89846 0.94901 0.90416 0.91212 0.91616 0.91395 0.87037 0.83576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.58 37.16 0.36 -2.18 16 2 C -0.11 -1.82 5.37 -26.73 -0.14 -1.96 16 3 C -0.08 -1.47 1.80 -90.62 -0.16 -1.64 16 4 C -0.11 -1.79 4.99 -26.73 -0.13 -1.92 16 5 C -0.17 -2.92 7.89 37.16 0.29 -2.63 16 6 C 0.07 1.32 3.66 -3.82 -0.01 1.30 16 7 N -0.53 -10.62 1.96 -236.07 -0.46 -11.08 16 8 C 0.19 4.76 4.51 -4.98 -0.02 4.74 16 9 C -0.51 -13.49 8.49 -34.44 -0.29 -13.79 16 10 H 0.07 1.93 4.56 -52.49 -0.24 1.69 16 11 C 0.06 1.57 5.45 -17.81 -0.10 1.48 16 12 N -0.90 -26.28 13.29 55.43 0.74 -25.54 16 13 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 C 0.06 1.01 4.63 -3.82 -0.02 0.99 16 18 C 0.08 1.16 2.10 -26.47 -0.06 1.10 16 19 H 0.10 1.48 4.56 -51.93 -0.24 1.24 16 20 C -0.16 -1.90 5.54 -26.34 -0.15 -2.05 16 21 C -0.08 -0.84 6.23 -27.87 -0.17 -1.01 16 22 C -0.30 -3.43 9.97 -36.06 -0.36 -3.79 16 23 C 0.06 0.78 9.87 29.10 0.29 1.06 16 24 O -0.30 -4.38 4.80 -17.10 -0.08 -4.46 16 25 H 0.06 1.04 6.65 -51.93 -0.35 0.70 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.75 8.04 -51.93 -0.42 0.33 16 30 H 0.09 1.84 5.44 -51.93 -0.28 1.56 16 31 H 0.03 0.50 7.97 -51.93 -0.41 0.09 16 32 H 0.07 1.05 4.48 -51.93 -0.23 0.82 16 33 H 0.12 2.18 3.45 -51.93 -0.18 2.00 16 34 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.02 0.39 7.51 -51.93 -0.39 0.00 16 36 H 0.05 1.04 5.49 -51.93 -0.29 0.75 16 37 H 0.06 1.15 5.05 -51.93 -0.26 0.89 16 38 H 0.03 0.80 8.02 -51.93 -0.42 0.38 16 39 H -0.01 -0.37 8.12 -51.93 -0.42 -0.79 16 40 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.08 1.38 7.90 -51.93 -0.41 0.97 16 42 H 0.03 0.57 8.03 -51.93 -0.42 0.15 16 43 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.11 1.11 8.06 -52.49 -0.42 0.69 16 48 H 0.15 1.50 8.06 -52.49 -0.42 1.07 16 LS Contribution 345.83 15.07 5.21 5.21 Total: -1.00 -27.85 345.83 -8.61 -36.46 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -8.31 Total: 3.27 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: -0.68 Total: -20.28 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.27 Total: -36.62 kcal Atomic # 8 Polarization: -4.38 SS G_CDS: -0.08 Total: -4.46 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.85 -8.61 -36.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193881366.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.263 kcal (2) G-P(sol) polarization free energy of solvation -27.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds