Wall clock time and date at job start Tue Mar 31 2020 06:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46835 * 2 1 4 4 C 1.52997 * 109.47372 * 64.99906 * 3 2 1 5 5 C 1.52998 * 109.47513 * 185.25733 * 4 3 2 6 6 C 1.53001 * 109.47116 * 185.00078 * 3 2 1 7 7 N 1.46897 * 109.47403 * 174.46329 * 6 3 2 8 8 C 1.46897 * 111.00067 * 160.34180 * 7 6 3 9 9 C 1.50701 * 109.47464 * 294.02780 * 8 7 6 10 10 H 1.08002 * 119.99870 * 4.18685 * 9 8 7 11 11 C 1.37874 * 120.00166 * 184.18733 * 9 8 7 12 12 N 1.31517 * 120.00077 * 5.13247 * 11 9 8 13 13 Si 1.86799 * 120.00157 * 185.13175 * 11 9 8 14 14 H 1.48504 * 109.47087 * 59.99726 * 13 11 9 15 15 H 1.48499 * 109.47323 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47219 * 300.00304 * 13 11 9 17 17 C 1.46900 * 110.99994 * 284.30048 * 7 6 3 18 18 C 1.52999 * 109.47149 * 170.00188 * 17 7 6 19 19 H 1.09000 * 109.70895 * 59.41448 * 18 17 7 20 20 C 1.53505 * 109.70391 * 179.97438 * 18 17 7 21 21 C 1.53261 * 108.15563 * 182.08293 * 20 18 17 22 22 C 1.50446 * 109.44137 * 313.17715 * 21 20 18 23 23 C 1.30693 * 122.49364 * 17.47887 * 22 21 20 24 24 O 1.35132 * 123.34382 * 359.56772 * 23 22 21 25 25 H 1.09001 * 109.47666 * 299.99724 * 1 2 3 26 26 H 1.09004 * 109.47206 * 60.00629 * 1 2 3 27 27 H 1.09005 * 109.46896 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46843 * 239.99899 * 2 1 3 29 29 H 1.09000 * 109.46764 * 119.99967 * 2 1 3 30 30 H 1.09000 * 109.47412 * 304.99977 * 3 2 1 31 31 H 1.09006 * 109.47166 * 305.26087 * 4 3 2 32 32 H 1.09008 * 109.47060 * 65.25382 * 4 3 2 33 33 H 1.08996 * 109.47352 * 173.00859 * 5 4 3 34 34 H 1.09001 * 109.47168 * 293.00361 * 5 4 3 35 35 H 1.08999 * 109.46894 * 53.00485 * 5 4 3 36 36 H 1.08996 * 109.47058 * 54.45650 * 6 3 2 37 37 H 1.09002 * 109.46745 * 294.46547 * 6 3 2 38 38 H 1.09000 * 109.47118 * 54.02709 * 8 7 6 39 39 H 1.08999 * 109.47262 * 174.02718 * 8 7 6 40 40 H 0.97003 * 120.00146 * 179.97438 * 12 11 9 41 41 H 1.08994 * 109.47286 * 49.99517 * 17 7 6 42 42 H 1.09005 * 109.46934 * 289.99872 * 17 7 6 43 43 H 1.09000 * 109.72894 * 62.42153 * 20 18 17 44 44 H 1.08990 * 109.76333 * 301.76899 * 20 18 17 45 45 H 1.08998 * 109.47237 * 73.16201 * 21 20 18 46 46 H 1.08991 * 109.47824 * 193.18500 * 21 20 18 47 47 H 1.07998 * 118.75456 * 197.48498 * 22 21 20 48 48 H 1.07998 * 118.32101 * 179.56777 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6351 2.1266 1.3073 5 6 2.0294 3.6039 1.2533 6 6 3.5648 1.4444 -0.1257 7 7 4.0434 2.8268 -0.2591 8 6 5.4691 2.9253 0.0808 9 6 5.6593 2.6180 1.5438 10 1 4.8169 2.3081 2.1444 11 6 6.9087 2.7324 2.1156 12 7 7.9134 3.2058 1.4112 13 14 7.1744 2.2150 3.8907 14 1 6.8410 0.7758 4.0420 15 1 8.5947 2.4365 4.2636 16 1 6.2986 3.0219 4.7779 17 6 3.7870 3.3447 -1.6096 18 6 4.0655 4.8489 -1.6403 19 1 5.1029 5.0364 -1.3632 20 6 3.7998 5.3957 -3.0499 21 6 4.1391 6.8903 -3.0541 22 6 3.5234 7.5469 -1.8486 23 6 3.1121 6.8661 -0.8116 24 8 3.1921 5.5198 -0.7276 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6053 1.9816 -0.8418 31 1 0.5567 2.0430 1.4424 32 1 2.1442 1.6449 2.1422 33 1 1.6323 4.1182 2.1284 34 1 3.1160 3.6899 1.2434 35 1 1.6209 4.0561 0.3496 36 1 3.8574 0.8720 -1.0059 37 1 4.0032 0.9923 0.7639 38 1 6.0354 2.2111 -0.5171 39 1 5.8234 3.9349 -0.1274 40 1 8.7923 3.2867 1.8136 41 1 2.7463 3.1623 -1.8772 42 1 4.4393 2.8398 -2.3222 43 1 2.7498 5.2562 -3.3068 44 1 4.4277 4.8739 -3.7720 45 1 5.2213 7.0173 -3.0240 46 1 3.7441 7.3501 -3.9599 47 1 3.4172 8.6216 -1.8399 48 1 2.6866 7.4072 0.0206 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193881383.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:06 Heat of formation + Delta-G solvation = -37.843854 kcal Electronic energy + Delta-G solvation = -24111.506255 eV Core-core repulsion = 20973.457019 eV Total energy + Delta-G solvation = -3138.049237 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.75886 -37.87563 -35.10117 -33.55633 -32.62383 -31.49364 -30.82004 -28.07233 -27.59129 -25.55302 -23.60786 -23.04512 -22.30727 -22.07322 -20.04656 -19.16367 -18.46485 -16.54679 -16.43714 -15.55054 -15.03574 -14.74039 -14.62741 -14.22957 -14.17862 -13.67881 -13.44054 -13.12452 -12.77526 -12.65828 -12.55870 -12.21203 -11.93950 -11.80830 -11.77400 -11.51549 -11.25923 -11.03389 -10.77354 -10.75134 -10.68941 -10.61446 -10.37420 -10.16340 -10.06544 -9.90703 -9.85979 -9.67529 -9.38812 -9.14776 -8.36738 -7.98766 -6.96489 -6.00772 -3.99929 2.64877 3.35173 3.39228 3.42371 3.91294 4.44146 4.70394 5.00246 5.10210 5.19273 5.24706 5.35156 5.38705 5.42840 5.59152 5.62890 5.66049 5.74120 5.84233 5.88357 5.92614 5.96640 6.02376 6.08625 6.10815 6.14848 6.23963 6.27855 6.34225 6.44165 6.48627 6.54059 6.61314 6.63982 6.80823 6.86744 6.92627 6.97427 7.21976 7.32030 7.33272 7.82868 7.97095 8.09030 8.14072 8.25478 8.57918 9.07089 9.63391 11.10319 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.009919 B = 0.007712 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.165472 B = 3629.651896 C = 5546.489334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.082 4.082 4 C -0.102 4.102 5 C -0.152 4.152 6 C 0.065 3.935 7 N -0.515 5.515 8 C 0.188 3.812 9 C -0.502 4.502 10 H 0.065 0.935 11 C 0.057 3.943 12 N -0.899 5.899 13 Si 0.893 3.107 14 H -0.278 1.278 15 H -0.289 1.289 16 H -0.276 1.276 17 C 0.061 3.939 18 C 0.096 3.904 19 H 0.079 0.921 20 C -0.155 4.155 21 C -0.075 4.075 22 C -0.308 4.308 23 C 0.070 3.930 24 O -0.289 6.289 25 H 0.056 0.944 26 H 0.049 0.951 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.038 0.962 32 H 0.051 0.949 33 H 0.015 0.985 34 H 0.120 0.880 35 H 0.043 0.957 36 H 0.016 0.984 37 H 0.086 0.914 38 H -0.017 1.017 39 H 0.037 0.963 40 H 0.261 0.739 41 H 0.069 0.931 42 H 0.039 0.961 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.111 0.889 48 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.143 1.482 -7.175 13.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.100 4.100 4 C -0.139 4.139 5 C -0.209 4.209 6 C -0.063 4.063 7 N -0.238 5.238 8 C 0.063 3.937 9 C -0.541 4.541 10 H 0.083 0.917 11 C -0.144 4.144 12 N -0.539 5.539 13 Si 0.721 3.279 14 H -0.203 1.203 15 H -0.215 1.215 16 H -0.202 1.202 17 C -0.068 4.068 18 C 0.040 3.960 19 H 0.097 0.903 20 C -0.193 4.193 21 C -0.112 4.112 22 C -0.328 4.328 23 C 0.006 3.994 24 O -0.201 6.201 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.034 0.966 34 H 0.138 0.862 35 H 0.062 0.938 36 H 0.034 0.966 37 H 0.104 0.896 38 H 0.000 1.000 39 H 0.055 0.945 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.057 0.943 43 H 0.088 0.912 44 H 0.093 0.907 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.129 0.871 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -11.289 1.667 -6.695 13.230 hybrid contribution 0.874 -0.474 0.161 1.007 sum -10.415 1.192 -6.534 12.352 Atomic orbital electron populations 1.21798 0.96453 1.00688 1.01735 1.21552 0.95314 0.97465 1.01526 1.21233 0.95986 0.94226 0.98604 1.21413 0.98202 0.97971 0.96348 1.22111 1.07551 0.93073 0.98210 1.22087 0.93639 0.89808 1.00777 1.62311 1.21413 1.18949 1.21147 1.19820 0.80948 0.96778 0.96186 1.21112 0.93918 1.44741 0.94316 0.91690 1.24952 0.96204 0.95417 0.97863 1.69948 1.01203 1.45722 1.36979 0.86636 0.76935 0.79131 0.85177 1.20342 1.21493 1.20170 1.22080 1.00607 0.91749 0.92339 1.22606 0.94093 0.92220 0.87126 0.90340 1.22258 1.02381 0.96647 0.97995 1.20241 1.00145 0.94225 0.96562 1.22332 1.13044 1.00067 0.97362 1.22064 0.96690 0.83909 0.96749 1.86142 1.61324 1.16158 1.56463 0.92461 0.93216 0.93533 0.92707 0.92106 0.92109 0.94332 0.93034 0.96563 0.86228 0.93762 0.96617 0.89570 0.99951 0.94518 0.92988 0.91223 0.94341 0.91162 0.90736 0.91637 0.91508 0.87075 0.83432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.67 37.16 0.36 -1.39 16 2 C -0.12 -1.63 5.40 -26.73 -0.14 -1.77 16 3 C -0.08 -1.28 2.05 -90.62 -0.19 -1.47 16 4 C -0.10 -1.69 5.27 -26.73 -0.14 -1.83 16 5 C -0.15 -2.80 8.24 37.16 0.31 -2.49 16 6 C 0.07 1.21 4.17 -3.82 -0.02 1.19 16 7 N -0.51 -10.31 0.89 -236.08 -0.21 -10.52 16 8 C 0.19 4.64 4.58 -4.98 -0.02 4.62 16 9 C -0.50 -13.58 7.94 -34.44 -0.27 -13.85 16 10 H 0.06 1.74 7.06 -52.49 -0.37 1.37 16 11 C 0.06 1.58 5.45 -17.82 -0.10 1.48 16 12 N -0.90 -26.29 13.29 55.43 0.74 -25.56 16 13 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 17 C 0.06 1.05 4.50 -3.82 -0.02 1.03 16 18 C 0.10 1.62 2.74 -26.47 -0.07 1.55 16 19 H 0.08 1.54 6.36 -51.93 -0.33 1.21 16 20 C -0.15 -2.11 5.54 -26.33 -0.15 -2.26 16 21 C -0.07 -0.98 6.23 -27.87 -0.17 -1.15 16 22 C -0.31 -4.26 9.97 -36.06 -0.36 -4.62 16 23 C 0.07 1.06 10.88 29.10 0.32 1.38 16 24 O -0.29 -5.06 8.03 -17.09 -0.14 -5.19 16 25 H 0.06 0.68 6.46 -51.93 -0.34 0.34 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.96 6.64 -51.93 -0.35 0.61 16 31 H 0.04 0.58 6.33 -51.93 -0.33 0.25 16 32 H 0.05 0.91 8.14 -51.92 -0.42 0.49 16 33 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.12 2.59 5.07 -51.93 -0.26 2.33 16 35 H 0.04 0.80 7.04 -51.93 -0.37 0.43 16 36 H 0.02 0.28 8.00 -51.93 -0.42 -0.13 16 37 H 0.09 1.80 6.49 -51.93 -0.34 1.46 16 38 H -0.02 -0.46 8.12 -51.93 -0.42 -0.88 16 39 H 0.04 0.99 6.08 -51.93 -0.32 0.67 16 40 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.07 1.12 6.56 -51.93 -0.34 0.78 16 42 H 0.04 0.66 8.12 -51.93 -0.42 0.23 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 48 H 0.15 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 359.91 15.07 5.42 5.42 Total: -1.00 -28.14 359.91 -8.68 -36.82 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -8.80 Total: 2.09 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: -0.67 Total: -19.57 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.53 Total: -36.08 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -0.14 Total: -5.19 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.14 -8.68 -36.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193881383.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.029 kcal (2) G-P(sol) polarization free energy of solvation -28.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds