Wall clock time and date at job start Tue Mar 31 2020 06:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46835 * 2 1 4 4 C 1.52997 * 109.47372 * 64.99906 * 3 2 1 5 5 C 1.52998 * 109.47513 * 185.25733 * 4 3 2 6 6 C 1.53001 * 109.47116 * 185.00078 * 3 2 1 7 7 N 1.46897 * 109.47403 * 174.46329 * 6 3 2 8 8 C 1.46897 * 111.00067 * 160.34180 * 7 6 3 9 9 C 1.50701 * 109.47464 * 294.02780 * 8 7 6 10 10 H 1.08002 * 119.99870 * 4.18685 * 9 8 7 11 11 C 1.37874 * 120.00166 * 184.18733 * 9 8 7 12 12 N 1.31517 * 120.00077 * 5.13247 * 11 9 8 13 13 Si 1.86799 * 120.00157 * 185.13175 * 11 9 8 14 14 H 1.48504 * 109.47087 * 59.99726 * 13 11 9 15 15 H 1.48499 * 109.47323 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47219 * 300.00304 * 13 11 9 17 17 C 1.46900 * 110.99994 * 284.30048 * 7 6 3 18 18 C 1.52999 * 109.47149 * 170.00188 * 17 7 6 19 19 H 1.09000 * 109.70895 * 59.41448 * 18 17 7 20 20 C 1.53505 * 109.70391 * 179.97438 * 18 17 7 21 21 C 1.53261 * 108.15563 * 182.08293 * 20 18 17 22 22 C 1.50446 * 109.44137 * 313.17715 * 21 20 18 23 23 C 1.30693 * 122.49364 * 17.47887 * 22 21 20 24 24 O 1.35132 * 123.34382 * 359.56772 * 23 22 21 25 25 H 1.09001 * 109.47666 * 299.99724 * 1 2 3 26 26 H 1.09004 * 109.47206 * 60.00629 * 1 2 3 27 27 H 1.09005 * 109.46896 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46843 * 239.99899 * 2 1 3 29 29 H 1.09000 * 109.46764 * 119.99967 * 2 1 3 30 30 H 1.09000 * 109.47412 * 304.99977 * 3 2 1 31 31 H 1.09006 * 109.47166 * 305.26087 * 4 3 2 32 32 H 1.09008 * 109.47060 * 65.25382 * 4 3 2 33 33 H 1.08996 * 109.47352 * 173.00859 * 5 4 3 34 34 H 1.09001 * 109.47168 * 293.00361 * 5 4 3 35 35 H 1.08999 * 109.46894 * 53.00485 * 5 4 3 36 36 H 1.08996 * 109.47058 * 54.45650 * 6 3 2 37 37 H 1.09002 * 109.46745 * 294.46547 * 6 3 2 38 38 H 1.09000 * 109.47118 * 54.02709 * 8 7 6 39 39 H 1.08999 * 109.47262 * 174.02718 * 8 7 6 40 40 H 0.97003 * 120.00146 * 179.97438 * 12 11 9 41 41 H 1.08994 * 109.47286 * 49.99517 * 17 7 6 42 42 H 1.09005 * 109.46934 * 289.99872 * 17 7 6 43 43 H 1.09000 * 109.72894 * 62.42153 * 20 18 17 44 44 H 1.08990 * 109.76333 * 301.76899 * 20 18 17 45 45 H 1.08998 * 109.47237 * 73.16201 * 21 20 18 46 46 H 1.08991 * 109.47824 * 193.18500 * 21 20 18 47 47 H 1.07998 * 118.75456 * 197.48498 * 22 21 20 48 48 H 1.07998 * 118.32101 * 179.56777 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6351 2.1266 1.3073 5 6 2.0294 3.6039 1.2533 6 6 3.5648 1.4444 -0.1257 7 7 4.0434 2.8268 -0.2591 8 6 5.4691 2.9253 0.0808 9 6 5.6593 2.6180 1.5438 10 1 4.8169 2.3081 2.1444 11 6 6.9087 2.7324 2.1156 12 7 7.9134 3.2058 1.4112 13 14 7.1744 2.2150 3.8907 14 1 6.8410 0.7758 4.0420 15 1 8.5947 2.4365 4.2636 16 1 6.2986 3.0219 4.7779 17 6 3.7870 3.3447 -1.6096 18 6 4.0655 4.8489 -1.6403 19 1 5.1029 5.0364 -1.3632 20 6 3.7998 5.3957 -3.0499 21 6 4.1391 6.8903 -3.0541 22 6 3.5234 7.5469 -1.8486 23 6 3.1121 6.8661 -0.8116 24 8 3.1921 5.5198 -0.7276 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6053 1.9816 -0.8418 31 1 0.5567 2.0430 1.4424 32 1 2.1442 1.6449 2.1422 33 1 1.6323 4.1182 2.1284 34 1 3.1160 3.6899 1.2434 35 1 1.6209 4.0561 0.3496 36 1 3.8574 0.8720 -1.0059 37 1 4.0032 0.9923 0.7639 38 1 6.0354 2.2111 -0.5171 39 1 5.8234 3.9349 -0.1274 40 1 8.7923 3.2867 1.8136 41 1 2.7463 3.1623 -1.8772 42 1 4.4393 2.8398 -2.3222 43 1 2.7498 5.2562 -3.3068 44 1 4.4277 4.8739 -3.7720 45 1 5.2213 7.0173 -3.0240 46 1 3.7441 7.3501 -3.9599 47 1 3.4172 8.6216 -1.8399 48 1 2.6866 7.4072 0.0206 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193881383.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:05 Heat of formation + Delta-G solvation = -50.230869 kcal Electronic energy + Delta-G solvation = -24112.043397 eV Core-core repulsion = 20973.457019 eV Total energy + Delta-G solvation = -3138.586378 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.03038 -39.31811 -36.53924 -34.76424 -34.58854 -32.79059 -32.13874 -29.73068 -29.07497 -27.04179 -24.87237 -24.76946 -23.67093 -23.29935 -21.61997 -20.51759 -19.73671 -18.49473 -17.74220 -16.91074 -16.50720 -16.43436 -16.08682 -15.67099 -15.37745 -14.97035 -14.73797 -14.55907 -14.29304 -13.95703 -13.77584 -13.65932 -13.51001 -13.28897 -13.07784 -12.96218 -12.68934 -12.65220 -12.52546 -12.36738 -12.03903 -11.93150 -11.72917 -11.69512 -11.50528 -11.34720 -11.21870 -11.03529 -10.99003 -10.91064 -10.50552 -9.16836 -8.62289 -8.16183 -6.22385 1.40497 1.42661 1.50045 1.50781 2.41787 2.68720 3.15037 3.26365 3.84152 3.86403 4.00923 4.07945 4.16280 4.25764 4.34676 4.38735 4.49314 4.53580 4.63655 4.66100 4.75669 4.78686 4.82062 4.86385 4.92611 4.94161 5.00150 5.01568 5.15197 5.18867 5.21938 5.23431 5.30312 5.35205 5.36380 5.47114 5.50962 5.56828 5.61858 5.71862 5.75840 5.80473 6.12993 6.38277 6.46518 6.70627 6.91243 6.93586 7.45419 8.94607 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.009919 B = 0.007712 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.165472 B = 3629.651896 C = 5546.489334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.118 4.118 3 C -0.070 4.070 4 C -0.099 4.099 5 C -0.143 4.143 6 C 0.066 3.934 7 N -0.512 5.512 8 C 0.207 3.793 9 C -0.509 4.509 10 H 0.063 0.937 11 C 0.004 3.996 12 N -0.934 5.934 13 Si 0.957 3.043 14 H -0.268 1.268 15 H -0.286 1.286 16 H -0.271 1.271 17 C 0.062 3.938 18 C 0.097 3.903 19 H 0.039 0.961 20 C -0.146 4.146 21 C -0.080 4.080 22 C -0.297 4.297 23 C 0.039 3.961 24 O -0.309 6.309 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.036 0.964 33 H 0.016 0.984 34 H 0.085 0.915 35 H 0.047 0.953 36 H 0.020 0.980 37 H 0.058 0.942 38 H -0.047 1.047 39 H 0.010 0.990 40 H 0.261 0.739 41 H 0.090 0.910 42 H 0.040 0.960 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.060 0.940 46 H 0.094 0.906 47 H 0.132 0.868 48 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.270 1.343 -7.665 15.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.156 4.156 3 C -0.089 4.089 4 C -0.136 4.136 5 C -0.200 4.200 6 C -0.062 4.062 7 N -0.235 5.235 8 C 0.081 3.919 9 C -0.547 4.547 10 H 0.081 0.919 11 C -0.194 4.194 12 N -0.575 5.575 13 Si 0.783 3.217 14 H -0.193 1.193 15 H -0.211 1.211 16 H -0.196 1.196 17 C -0.066 4.066 18 C 0.041 3.959 19 H 0.057 0.943 20 C -0.184 4.184 21 C -0.117 4.117 22 C -0.317 4.317 23 C -0.024 4.024 24 O -0.222 6.222 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.035 0.965 34 H 0.104 0.896 35 H 0.066 0.934 36 H 0.038 0.962 37 H 0.076 0.924 38 H -0.029 1.029 39 H 0.028 0.972 40 H 0.070 0.930 41 H 0.108 0.892 42 H 0.058 0.942 43 H 0.101 0.899 44 H 0.105 0.895 45 H 0.078 0.922 46 H 0.112 0.888 47 H 0.150 0.850 48 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -13.438 1.527 -7.190 15.317 hybrid contribution 1.528 -0.370 0.265 1.594 sum -11.910 1.157 -6.925 13.826 Atomic orbital electron populations 1.21759 0.94549 1.01889 1.02023 1.21524 0.96888 0.95491 1.01664 1.21140 0.93354 0.96053 0.98352 1.21386 0.99469 0.96508 0.96247 1.21942 1.05155 0.94535 0.98403 1.22108 0.95796 0.88729 0.99578 1.62289 1.17953 1.20040 1.23262 1.19408 0.83523 0.94136 0.94836 1.21405 0.93904 1.44035 0.95400 0.91893 1.25789 0.96018 0.95476 1.02126 1.70078 1.01608 1.47012 1.38841 0.85617 0.76883 0.79108 0.80125 1.19337 1.21106 1.19649 1.22156 1.01670 0.92098 0.90687 1.22443 0.92081 0.92176 0.89243 0.94312 1.22214 1.03354 0.97078 0.95764 1.20351 0.99946 0.93911 0.97469 1.22662 1.11003 1.01140 0.96866 1.22452 0.98513 0.83242 0.98166 1.86100 1.61414 1.17555 1.57132 0.92555 0.92491 0.91970 0.91990 0.92680 0.91351 0.91924 0.94555 0.96460 0.89609 0.93444 0.96214 0.92383 1.02946 0.97206 0.92988 0.89157 0.94174 0.89921 0.89517 0.92188 0.88812 0.84998 0.81870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.67 71.98 0.70 -2.23 16 2 C -0.12 -2.93 5.40 30.59 0.17 -2.76 16 3 C -0.07 -2.11 2.05 -10.79 -0.02 -2.13 16 4 C -0.10 -3.16 5.27 30.59 0.16 -3.00 16 5 C -0.14 -5.21 8.24 71.98 0.59 -4.62 16 6 C 0.07 2.47 4.17 86.30 0.36 2.83 16 7 N -0.51 -21.16 0.89 -900.81 -0.81 -21.97 16 8 C 0.21 10.82 4.58 85.56 0.39 11.21 16 9 C -0.51 -28.57 7.94 25.60 0.20 -28.36 16 10 H 0.06 3.49 7.06 -2.91 -0.02 3.47 16 11 C 0.00 0.20 5.45 84.65 0.46 0.67 16 12 N -0.93 -56.53 13.29 21.45 0.29 -56.24 16 13 Si 0.96 44.93 29.54 68.60 2.03 46.96 16 14 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 15 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 16 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 17 C 0.06 2.15 4.50 86.30 0.39 2.54 16 18 C 0.10 3.35 2.74 30.76 0.08 3.44 16 19 H 0.04 1.63 6.36 -2.39 -0.02 1.62 16 20 C -0.15 -3.80 5.54 30.85 0.17 -3.63 16 21 C -0.08 -1.95 6.23 29.86 0.19 -1.77 16 22 C -0.30 -7.76 9.97 25.88 0.26 -7.50 16 23 C 0.04 1.17 10.88 68.10 0.74 1.91 16 24 O -0.31 -10.91 8.03 -84.08 -0.68 -11.59 16 25 H 0.06 1.15 6.46 -2.39 -0.02 1.13 16 26 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 28 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.05 1.43 8.14 -2.39 -0.02 1.42 16 30 H 0.07 1.98 6.64 -2.39 -0.02 1.97 16 31 H 0.06 1.72 6.33 -2.38 -0.02 1.71 16 32 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.09 3.80 5.07 -2.39 -0.01 3.79 16 35 H 0.05 1.66 7.04 -2.39 -0.02 1.65 16 36 H 0.02 0.72 8.00 -2.39 -0.02 0.70 16 37 H 0.06 2.50 6.49 -2.39 -0.02 2.48 16 38 H -0.05 -2.67 8.12 -2.39 -0.02 -2.69 16 39 H 0.01 0.57 6.08 -2.39 -0.01 0.55 16 40 H 0.26 15.02 8.31 -92.71 -0.77 14.24 16 41 H 0.09 2.77 6.56 -2.39 -0.02 2.75 16 42 H 0.04 1.38 8.12 -2.38 -0.02 1.36 16 43 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.13 2.86 8.06 -2.91 -0.02 2.84 16 48 H 0.16 4.12 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -62.65 359.91 6.56 -56.09 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 0.89 Total: 20.16 kcal Atomic # 6 Polarization: -38.24 SS G_CDS: 4.84 Total: -33.40 kcal Atomic # 7 Polarization: -77.69 SS G_CDS: -0.52 Total: -78.21 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -0.68 Total: -11.59 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -62.65 6.56 -56.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193881383.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.856 kcal (2) G-P(sol) polarization free energy of solvation -62.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds