Wall clock time and date at job start Tue Mar 31 2020 05:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99667 * 2 1 4 4 C 1.52998 * 109.46997 * 179.97438 * 3 2 1 5 5 N 1.46906 * 109.47313 * 64.64420 * 4 3 2 6 6 C 1.46949 * 110.99835 * 75.70536 * 5 4 3 7 7 C 1.53051 * 109.36008 * 183.18886 * 6 5 4 8 8 N 1.46961 * 109.36612 * 301.59977 * 7 6 5 9 9 C 1.46899 * 110.99804 * 183.19042 * 8 7 6 10 10 C 1.53008 * 109.46978 * 169.99939 * 9 8 7 11 11 H 1.09002 * 109.46712 * 55.00063 * 10 9 8 12 12 C 1.47198 * 109.47026 * 294.99978 * 10 9 8 13 13 N 8.89964 * 147.85347 * 288.17006 * 2 1 3 14 14 C 1.52995 * 109.46901 * 174.99779 * 10 9 8 15 15 C 1.50706 * 109.47102 * 185.00057 * 14 10 9 16 16 H 1.08000 * 119.99275 * 0.02562 * 15 14 10 17 17 C 1.37875 * 120.00189 * 179.72555 * 15 14 10 18 18 N 1.31513 * 120.00062 * 0.27507 * 17 15 14 19 19 Si 1.86802 * 119.99941 * 180.27309 * 17 15 14 20 20 H 1.48507 * 109.47054 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46861 * 119.99846 * 19 17 15 22 22 H 1.48489 * 109.47307 * 240.00201 * 19 17 15 23 23 C 1.46950 * 110.87889 * 59.32236 * 8 7 6 24 24 C 1.46952 * 110.99867 * 199.50771 * 5 4 3 25 25 H 1.09003 * 109.47592 * 300.00063 * 1 2 3 26 26 H 1.09007 * 109.47210 * 60.00540 * 1 2 3 27 27 H 1.09004 * 109.47245 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47442 * 59.99842 * 3 2 1 29 29 H 1.09003 * 109.46582 * 299.99685 * 3 2 1 30 30 H 1.08999 * 109.47031 * 304.64203 * 4 3 2 31 31 H 1.09004 * 109.47089 * 184.64526 * 4 3 2 32 32 H 1.08999 * 109.48819 * 63.22705 * 6 5 4 33 33 H 1.08991 * 109.51150 * 303.16741 * 6 5 4 34 34 H 1.09002 * 109.48797 * 181.63591 * 7 6 5 35 35 H 1.09000 * 109.49010 * 61.56788 * 7 6 5 36 36 H 1.09005 * 109.47392 * 50.00219 * 9 8 7 37 37 H 1.08994 * 109.47036 * 289.99911 * 9 8 7 38 38 H 1.09001 * 109.47299 * 65.00774 * 14 10 9 39 39 H 1.09000 * 109.47725 * 304.99823 * 14 10 9 40 40 H 0.96998 * 119.99833 * 179.97438 * 18 17 15 41 41 H 1.08997 * 109.48899 * 60.64902 * 23 8 7 42 42 H 1.09003 * 109.48730 * 180.71300 * 23 8 7 43 43 H 1.09000 * 109.48845 * 296.77705 * 24 5 4 44 44 H 1.09006 * 109.49410 * 56.84070 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9773 0.5546 -1.2507 6 6 3.9086 1.5032 -2.3709 7 6 4.2998 0.7879 -3.6661 8 7 5.6554 0.2372 -3.5284 9 6 6.0972 -0.3929 -4.7797 10 6 7.5866 -0.7296 -4.6829 11 1 7.7635 -1.3446 -3.8005 12 6 8.3652 0.5152 -4.5777 13 7 8.9642 1.4767 -4.4992 14 6 8.0183 -1.4969 -5.9342 15 6 9.4524 -1.9352 -5.7849 16 1 10.0009 -1.6912 -4.8871 17 6 10.0624 -2.6530 -6.7917 18 7 9.3943 -2.9506 -7.8847 19 14 11.8377 -3.2028 -6.6033 20 1 12.3610 -2.7452 -5.2910 21 1 11.9071 -4.6845 -6.6740 22 1 12.6560 -2.6163 -7.6948 23 6 5.7240 -0.7114 -2.4082 24 6 5.3327 0.0039 -1.1129 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 1.6885 1.8464 0.8899 29 1 1.6885 1.8463 -0.8901 30 1 3.8511 0.5739 0.8464 31 1 3.9784 2.1772 0.0839 32 1 4.5958 2.3297 -2.1901 33 1 2.8927 1.8878 -2.4604 34 1 4.2777 1.4967 -4.4939 35 1 3.5965 -0.0216 -3.8612 36 1 5.9332 0.2939 -5.6101 37 1 5.5281 -1.3073 -4.9467 38 1 7.9249 -0.8507 -6.8070 39 1 7.3821 -2.3729 -6.0609 40 1 9.8235 -3.4552 -8.5932 41 1 5.0369 -1.5379 -2.5890 42 1 6.7401 -1.0956 -2.3188 43 1 6.0360 0.8135 -0.9178 44 1 5.3550 -0.7049 -0.2851 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194620201.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:42 Heat of formation + Delta-G solvation = -13.839777 kcal Electronic energy + Delta-G solvation = -22149.231476 eV Core-core repulsion = 18908.682791 eV Total energy + Delta-G solvation = -3240.548685 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.52879 -38.03861 -36.72871 -35.06269 -33.53284 -31.85230 -31.00243 -30.04627 -27.41839 -26.33386 -25.24899 -23.59481 -22.72137 -21.81063 -21.47544 -19.75248 -16.91886 -16.76905 -16.51489 -16.36235 -15.66935 -15.28873 -14.99221 -14.77316 -14.60208 -14.44801 -14.08291 -13.95774 -13.25711 -12.91045 -12.68815 -12.34753 -12.16999 -12.13300 -12.00322 -11.85723 -11.56265 -11.33245 -11.23077 -11.16830 -11.02859 -10.89531 -10.73593 -10.60032 -10.45517 -10.06821 -9.85266 -9.51334 -9.18439 -8.45069 -8.42411 -8.12425 -6.08289 -4.11206 3.29492 3.37662 3.42341 3.56766 3.74362 3.75857 3.86193 4.03747 4.42753 4.74016 4.79429 4.92127 4.94588 5.05182 5.09887 5.11647 5.16453 5.22365 5.28578 5.29981 5.36542 5.44785 5.47483 5.52473 5.60811 5.69418 5.71114 5.81543 5.92816 5.99588 6.05763 6.14420 6.39984 6.53159 6.83793 6.92578 7.04328 7.22949 7.24871 7.45130 7.54972 7.87281 8.24939 8.61401 8.93797 9.54238 11.02702 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032245 B = 0.003063 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.137308 B = 9139.140606 C = 9298.693352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.374 6.374 3 C 0.068 3.932 4 C 0.055 3.945 5 N -0.531 5.531 6 C 0.057 3.943 7 C 0.059 3.941 8 N -0.544 5.544 9 C 0.064 3.936 10 C 0.010 3.990 11 H 0.100 0.900 12 C 0.258 3.742 13 N -0.482 5.482 14 C 0.031 3.969 15 C -0.524 4.524 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.284 1.284 23 C 0.053 3.947 24 C 0.060 3.940 25 H 0.035 0.965 26 H 0.038 0.962 27 H 0.084 0.916 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.081 0.919 31 H 0.051 0.949 32 H 0.040 0.960 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.043 0.957 36 H 0.079 0.921 37 H 0.055 0.945 38 H 0.026 0.974 39 H 0.038 0.962 40 H 0.262 0.738 41 H 0.046 0.954 42 H 0.086 0.914 43 H 0.040 0.960 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.017 6.038 14.686 24.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.292 6.292 3 C -0.009 4.009 4 C -0.073 4.073 5 N -0.256 5.256 6 C -0.071 4.071 7 C -0.069 4.069 8 N -0.269 5.269 9 C -0.065 4.065 10 C -0.012 4.012 11 H 0.117 0.883 12 C -0.059 4.059 13 N -0.159 5.159 14 C -0.008 4.008 15 C -0.563 4.563 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.210 1.210 23 C -0.075 4.075 24 C -0.068 4.068 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.102 0.898 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.062 0.938 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.044 0.956 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.104 0.896 43 H 0.058 0.942 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.984 7.235 14.642 23.563 hybrid contribution 0.548 -0.453 -0.074 0.715 sum -16.436 6.782 14.568 22.986 Atomic orbital electron populations 1.22716 0.81764 1.02619 0.99481 1.88007 1.18804 1.27198 1.95205 1.22534 0.93604 0.85164 0.99598 1.22111 0.93613 0.98367 0.93214 1.62101 1.24812 1.35037 1.03611 1.22197 1.00344 0.93698 0.90881 1.22088 0.89248 0.98755 0.96800 1.62196 1.23756 1.35916 1.04998 1.22213 0.94610 0.98559 0.91111 1.19255 0.89865 0.87820 1.04264 0.88257 1.28841 0.92188 0.93577 0.91291 1.80953 1.11094 1.13082 1.10764 1.19177 0.97045 0.94879 0.89655 1.21179 0.96916 1.34882 1.03286 0.92473 1.24954 0.98035 0.95850 0.95171 1.69948 1.36776 1.39450 1.06872 0.86541 0.84973 0.78324 0.78281 1.19678 1.20859 1.20982 1.22225 1.01666 0.93719 0.89915 1.22173 0.88116 0.98623 0.97913 0.94593 0.94321 0.89761 0.93366 0.93389 0.90011 0.93127 0.94148 0.90793 0.90457 0.93832 0.90291 0.92708 0.95589 0.94428 0.92866 0.93544 0.89580 0.94168 0.90308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.37 -3.95 10.64 -35.23 -0.38 -4.32 16 3 C 0.07 0.58 6.13 37.16 0.23 0.81 16 4 C 0.06 0.51 5.39 -3.82 -0.02 0.48 16 5 N -0.53 -5.94 4.58 -234.47 -1.07 -7.01 16 6 C 0.06 0.62 5.43 -3.77 -0.02 0.60 16 7 C 0.06 0.72 5.61 -3.76 -0.02 0.70 16 8 N -0.54 -7.62 4.41 -234.46 -1.03 -8.65 16 9 C 0.06 0.97 4.32 -3.82 -0.02 0.96 16 10 C 0.01 0.18 2.14 -93.41 -0.20 -0.01 16 11 H 0.10 1.75 6.28 -51.93 -0.33 1.43 16 12 C 0.26 5.47 13.67 -20.78 -0.28 5.18 16 13 N -0.48 -11.08 18.53 42.14 0.78 -10.30 16 14 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 15 C -0.52 -14.04 8.60 -34.44 -0.30 -14.34 16 16 H 0.06 1.53 7.59 -52.49 -0.40 1.13 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -25.65 13.29 55.43 0.74 -24.91 16 19 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 C 0.05 0.68 5.42 -3.77 -0.02 0.66 16 24 C 0.06 0.69 5.57 -3.77 -0.02 0.67 16 25 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.04 0.26 8.14 -51.92 -0.42 -0.17 16 27 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.39 6.74 -51.93 -0.35 0.04 16 30 H 0.08 0.74 7.85 -51.93 -0.41 0.33 16 31 H 0.05 0.42 8.00 -51.93 -0.42 0.01 16 32 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.70 6.72 -51.93 -0.35 0.35 16 34 H 0.08 0.89 8.07 -51.93 -0.42 0.47 16 35 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 1.21 8.02 -51.93 -0.42 0.79 16 37 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 1.13 6.25 -51.93 -0.32 0.81 16 43 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.08 0.83 8.00 -51.93 -0.42 0.41 16 LS Contribution 356.83 15.07 5.38 5.38 Total: -1.00 -31.25 356.83 -8.00 -39.25 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -7.61 Total: -5.08 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: 0.22 Total: -0.74 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: -0.59 Total: -50.88 kcal Atomic # 8 Polarization: -3.95 SS G_CDS: -0.38 Total: -4.32 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.25 -8.00 -39.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194620201.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.408 kcal (2) G-P(sol) polarization free energy of solvation -31.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds