Wall clock time and date at job start Tue Mar 31 2020 05:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42898 * 114.00145 * 2 1 4 4 C 1.52996 * 109.46996 * 180.02562 * 3 2 1 5 5 N 1.46902 * 109.47655 * 65.57301 * 4 3 2 6 6 C 1.46954 * 110.99938 * 75.32971 * 5 4 3 7 7 C 1.53045 * 109.36462 * 183.18936 * 6 5 4 8 8 N 1.46960 * 109.36548 * 301.60464 * 7 6 5 9 9 C 1.46905 * 110.99821 * 183.18888 * 8 7 6 10 10 C 1.52999 * 109.47470 * 75.37501 * 9 8 7 11 11 H 1.09001 * 109.46684 * 303.50749 * 10 9 8 12 12 C 1.47200 * 109.46768 * 63.50249 * 10 9 8 13 13 N 8.85104 * 142.85353 * 293.82644 * 2 1 3 14 14 C 1.52989 * 109.47356 * 183.50097 * 10 9 8 15 15 C 1.50702 * 109.47623 * 174.99798 * 14 10 9 16 16 H 1.08002 * 119.99379 * 0.02562 * 15 14 10 17 17 C 1.37865 * 120.00351 * 180.02562 * 15 14 10 18 18 N 1.31516 * 120.00231 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99975 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47482 * 59.99882 * 19 17 15 21 21 H 1.48505 * 109.47524 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47409 * 299.99981 * 19 17 15 23 23 C 1.46954 * 110.88093 * 59.32151 * 8 7 6 24 24 C 1.46946 * 111.00137 * 199.13496 * 5 4 3 25 25 H 1.08996 * 109.46928 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46647 * 300.00468 * 1 2 3 27 27 H 1.08995 * 109.46987 * 60.00054 * 1 2 3 28 28 H 1.08995 * 109.47360 * 59.99680 * 3 2 1 29 29 H 1.09005 * 109.47021 * 299.99846 * 3 2 1 30 30 H 1.09001 * 109.46866 * 305.57073 * 4 3 2 31 31 H 1.09003 * 109.46895 * 185.57407 * 4 3 2 32 32 H 1.09004 * 109.48309 * 63.22421 * 6 5 4 33 33 H 1.08997 * 109.49107 * 303.16308 * 6 5 4 34 34 H 1.09008 * 109.49232 * 181.63702 * 7 6 5 35 35 H 1.09003 * 109.48653 * 61.56998 * 7 6 5 36 36 H 1.09001 * 109.46688 * 195.37400 * 9 8 7 37 37 H 1.09002 * 109.46876 * 315.37551 * 9 8 7 38 38 H 1.09004 * 109.47590 * 295.00541 * 14 10 9 39 39 H 1.09007 * 109.46965 * 54.99929 * 14 10 9 40 40 H 0.96997 * 120.00023 * 179.97438 * 18 17 15 41 41 H 1.09003 * 109.48957 * 60.64202 * 23 8 7 42 42 H 1.09004 * 109.48979 * 180.71217 * 23 8 7 43 43 H 1.08998 * 109.49332 * 296.78179 * 24 5 4 44 44 H 1.09008 * 109.49292 * 56.82572 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9780 0.5751 -1.2619 6 6 3.9015 1.5396 -2.3681 7 6 4.2937 0.8455 -3.6745 8 7 5.6526 0.3003 -3.5478 9 6 6.0950 -0.3091 -4.8092 10 6 6.4597 0.7918 -5.8072 11 1 5.6054 1.4546 -5.9451 12 6 7.6014 1.5639 -5.2903 13 7 8.4842 2.1591 -4.8892 14 6 6.8368 0.1597 -7.1484 15 6 7.0768 1.2454 -8.1656 16 1 6.9713 2.2826 -7.8835 17 6 7.4310 0.9147 -9.4563 18 7 7.5590 -0.3483 -9.8001 19 14 7.7292 2.2606 -10.7170 20 1 8.8361 3.1359 -10.2543 21 1 8.0940 1.6471 -12.0193 22 1 6.4941 3.0688 -10.8798 23 6 5.7289 -0.6642 -2.4417 24 6 5.3367 0.0300 -1.1352 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6887 1.8464 0.8899 29 1 1.6887 1.8464 -0.8900 30 1 3.8508 0.5597 0.8350 31 1 3.9785 2.1755 0.0992 32 1 4.5846 2.3672 -2.1767 33 1 2.8832 1.9195 -2.4496 34 1 4.2658 1.5662 -4.4919 35 1 3.5944 0.0350 -3.8798 36 1 6.9679 -0.9350 -4.6237 37 1 5.2906 -0.9196 -5.2195 38 1 7.7437 -0.4329 -7.0286 39 1 6.0248 -0.4833 -7.4881 40 1 7.8078 -0.5809 -10.7083 41 1 5.0458 -1.4918 -2.6330 42 1 6.7474 -1.0441 -2.3601 43 1 6.0361 0.8404 -0.9298 44 1 5.3648 -0.6905 -0.3177 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194620217.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:44 Heat of formation + Delta-G solvation = -14.952512 kcal Electronic energy + Delta-G solvation = -22151.902954 eV Core-core repulsion = 18911.306017 eV Total energy + Delta-G solvation = -3240.596937 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.51730 -38.01921 -36.69922 -35.04048 -33.52654 -31.87901 -30.91206 -30.12197 -27.42361 -26.34077 -25.10326 -23.78395 -22.59922 -21.70612 -21.60667 -19.74911 -16.91480 -16.72754 -16.60013 -16.32308 -15.62652 -15.34063 -14.91183 -14.78491 -14.59295 -14.43520 -14.11220 -13.98187 -13.20447 -12.92371 -12.67033 -12.36305 -12.20395 -12.07230 -12.01155 -11.85243 -11.56031 -11.26393 -11.24412 -11.15055 -11.00381 -10.95204 -10.70634 -10.59062 -10.47398 -10.10904 -9.84086 -9.50097 -9.21595 -8.44327 -8.42686 -8.12811 -6.07819 -4.10951 3.32085 3.36335 3.40055 3.57494 3.73628 3.76223 3.86833 4.03240 4.42799 4.74698 4.79856 4.93369 4.94789 5.05303 5.11419 5.13201 5.16956 5.21357 5.30186 5.31419 5.37147 5.44632 5.46534 5.52227 5.60188 5.70054 5.71313 5.82063 5.93650 5.98212 6.04907 6.13151 6.39865 6.53495 6.83876 6.92177 7.04236 7.23388 7.24372 7.45192 7.55599 7.87345 8.25393 8.63047 8.93628 9.54342 11.03087 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027495 B = 0.003158 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.137229 B = 8864.038744 C = 9157.617756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.375 6.375 3 C 0.068 3.932 4 C 0.055 3.945 5 N -0.531 5.531 6 C 0.056 3.944 7 C 0.056 3.944 8 N -0.544 5.544 9 C 0.063 3.937 10 C 0.013 3.987 11 H 0.098 0.902 12 C 0.259 3.741 13 N -0.484 5.484 14 C 0.032 3.968 15 C -0.526 4.526 16 H 0.056 0.944 17 C 0.063 3.937 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.059 3.941 24 C 0.060 3.940 25 H 0.084 0.916 26 H 0.035 0.965 27 H 0.039 0.961 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.081 0.919 31 H 0.051 0.949 32 H 0.041 0.959 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.045 0.955 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.026 0.974 39 H 0.037 0.963 40 H 0.263 0.737 41 H 0.044 0.956 42 H 0.078 0.922 43 H 0.040 0.960 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.492 -0.321 19.207 23.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.293 6.293 3 C -0.009 4.009 4 C -0.073 4.073 5 N -0.256 5.256 6 C -0.072 4.072 7 C -0.073 4.073 8 N -0.269 5.269 9 C -0.065 4.065 10 C -0.009 4.009 11 H 0.116 0.884 12 C -0.058 4.058 13 N -0.161 5.161 14 C -0.007 4.007 15 C -0.564 4.564 16 H 0.074 0.926 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.069 4.069 24 C -0.068 4.068 25 H 0.102 0.898 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.063 0.937 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.044 0.956 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.096 0.904 43 H 0.058 0.942 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.001 0.289 19.667 23.041 hybrid contribution -0.376 0.772 -0.984 1.306 sum -12.377 1.062 18.683 22.436 Atomic orbital electron populations 1.22715 0.81713 1.02599 0.99553 1.87994 1.18860 1.27255 1.95226 1.22539 0.93549 0.85156 0.99704 1.22104 0.93675 0.98537 0.92952 1.62100 1.24305 1.35291 1.03906 1.22221 1.00533 0.93530 0.90915 1.22191 0.88875 0.99287 0.96903 1.62178 1.23969 1.35694 1.05037 1.22221 1.00532 0.95633 0.88159 1.19211 0.90928 0.94464 0.96306 0.88403 1.28940 0.93734 0.92591 0.90530 1.81045 1.11994 1.10869 1.12185 1.19166 0.98012 0.96322 0.87208 1.21104 1.47616 0.92806 0.94882 0.92589 1.24946 0.95126 0.95391 0.98485 1.69928 1.47643 1.16213 1.19284 0.86661 0.78868 0.82057 0.80519 1.20241 1.21200 1.20065 1.22122 1.00910 0.93635 0.90261 1.22153 0.88320 0.98674 0.97649 0.89789 0.94594 0.94226 0.93351 0.93243 0.90095 0.93107 0.94078 0.90640 0.89751 0.93673 0.90380 0.92521 0.95613 0.94463 0.92753 0.93807 0.90382 0.94182 0.90483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.37 -3.97 10.66 -35.23 -0.38 -4.34 16 3 C 0.07 0.58 6.13 37.16 0.23 0.81 16 4 C 0.06 0.51 5.38 -3.82 -0.02 0.49 16 5 N -0.53 -5.93 4.60 -234.47 -1.08 -7.00 16 6 C 0.06 0.63 5.43 -3.77 -0.02 0.61 16 7 C 0.06 0.70 5.43 -3.77 -0.02 0.68 16 8 N -0.54 -7.61 4.30 -234.45 -1.01 -8.61 16 9 C 0.06 0.96 4.38 -3.82 -0.02 0.95 16 10 C 0.01 0.24 2.26 -93.41 -0.21 0.03 16 11 H 0.10 1.73 6.76 -51.93 -0.35 1.38 16 12 C 0.26 5.50 13.64 -20.70 -0.28 5.21 16 13 N -0.48 -11.15 18.55 42.22 0.78 -10.37 16 14 C 0.03 0.73 4.42 -27.89 -0.12 0.61 16 15 C -0.53 -14.09 8.60 -34.44 -0.30 -14.38 16 16 H 0.06 1.49 7.59 -52.49 -0.40 1.09 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -25.65 13.29 55.43 0.74 -24.92 16 19 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 C 0.06 0.72 5.57 -3.77 -0.02 0.70 16 24 C 0.06 0.67 5.57 -3.77 -0.02 0.65 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 27 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.42 6.70 -51.93 -0.35 0.07 16 30 H 0.08 0.72 7.85 -51.93 -0.41 0.31 16 31 H 0.05 0.43 8.00 -51.93 -0.42 0.01 16 32 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.76 6.68 -51.93 -0.35 0.41 16 34 H 0.08 1.07 6.71 -51.92 -0.35 0.72 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.08 1.19 7.85 -51.93 -0.41 0.79 16 37 H 0.06 0.81 8.00 -51.93 -0.42 0.40 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.04 0.88 8.14 -51.92 -0.42 0.45 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.93 8.00 -51.93 -0.42 0.51 16 43 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.08 0.76 8.00 -51.92 -0.42 0.34 16 LS Contribution 357.40 15.07 5.39 5.39 Total: -1.00 -31.22 357.40 -8.00 -39.22 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -7.63 Total: -5.08 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: 0.21 Total: -0.65 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: -0.57 Total: -50.91 kcal Atomic # 8 Polarization: -3.97 SS G_CDS: -0.38 Total: -4.34 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.22 -8.00 -39.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194620217.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.269 kcal (2) G-P(sol) polarization free energy of solvation -31.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds