Wall clock time and date at job start Tue Mar 31 2020 06:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46934 * 2 1 4 4 C 1.53005 * 109.47234 * 185.12684 * 3 2 1 5 5 C 1.53002 * 109.47068 * 294.18734 * 4 3 2 6 6 C 1.53008 * 109.46920 * 293.81900 * 5 4 3 7 7 C 1.53002 * 109.46656 * 184.99240 * 6 5 4 8 8 C 1.50697 * 109.47079 * 54.18684 * 4 3 2 9 9 O 1.21290 * 119.99715 * 253.52834 * 8 4 3 10 10 N 1.34770 * 120.00018 * 73.52668 * 8 4 3 11 11 C 1.37098 * 119.99673 * 183.76180 * 10 8 4 12 12 H 1.08010 * 119.99592 * 212.04882 * 11 10 8 13 13 C 1.38944 * 120.00378 * 32.05393 * 11 10 8 14 14 N 1.31417 * 120.00077 * 12.74245 * 13 11 10 15 15 Si 1.86802 * 120.00195 * 192.74242 * 13 11 10 16 16 H 1.48504 * 109.46936 * 89.99812 * 15 13 11 17 17 H 1.48498 * 109.47265 * 210.00117 * 15 13 11 18 18 H 1.48504 * 109.47013 * 329.99952 * 15 13 11 19 19 C 1.46498 * 120.00177 * 3.48199 * 10 8 4 20 20 C 1.54264 * 110.03493 * 231.92375 * 19 10 8 21 21 C 1.54970 * 104.15957 * 217.13752 * 20 19 10 22 22 C 1.54885 * 102.77486 * 37.88849 * 21 20 19 23 23 C 1.53873 * 110.03097 * 114.70632 * 19 10 8 24 24 H 1.09002 * 109.46976 * 60.00001 * 1 2 3 25 25 H 1.08996 * 109.46874 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46643 * 299.99778 * 1 2 3 27 27 H 1.09000 * 109.47234 * 240.00639 * 2 1 3 28 28 H 1.08998 * 109.47475 * 120.00554 * 2 1 3 29 29 H 1.09008 * 109.47068 * 65.12996 * 3 2 1 30 30 H 1.08998 * 109.47498 * 305.13107 * 3 2 1 31 31 H 1.08999 * 109.46980 * 174.19123 * 4 3 2 32 32 H 1.09001 * 109.46915 * 53.81364 * 5 4 3 33 33 H 1.08994 * 109.47400 * 173.81673 * 5 4 3 34 34 H 1.08993 * 109.46953 * 304.98664 * 6 5 4 35 35 H 1.08997 * 109.47224 * 64.99627 * 6 5 4 36 36 H 1.08994 * 109.47298 * 59.99818 * 7 6 5 37 37 H 1.09004 * 109.46948 * 179.97438 * 7 6 5 38 38 H 1.09002 * 109.47327 * 299.99877 * 7 6 5 39 39 H 0.96997 * 120.00118 * 184.86124 * 14 13 11 40 40 H 1.09006 * 110.01855 * 353.31950 * 19 10 8 41 41 H 1.08998 * 110.48954 * 335.78437 * 20 19 10 42 42 H 1.09009 * 110.48442 * 98.42887 * 20 19 10 43 43 H 1.09002 * 110.71880 * 279.57338 * 21 20 19 44 44 H 1.08996 * 110.92098 * 156.30336 * 21 20 19 45 45 H 1.09003 * 110.48453 * 203.40209 * 22 21 20 46 46 H 1.08996 * 110.59599 * 80.81986 * 22 21 20 47 47 H 1.09006 * 110.03579 * 238.57564 * 23 19 10 48 48 H 1.08998 * 110.03543 * 0.02562 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5646 1.4445 -0.1289 5 6 4.1829 0.8152 1.1211 6 6 3.9035 1.7072 2.3326 7 6 4.6260 1.1438 3.5580 8 6 3.9671 0.6485 -1.3435 9 8 4.4643 -0.4499 -1.2113 10 7 3.7744 1.1570 -2.5767 11 6 4.0687 0.4025 -3.6829 12 1 4.4186 0.8814 -4.5856 13 6 3.9169 -0.9780 -3.6428 14 7 3.2628 -1.5386 -2.6504 15 14 4.6424 -2.0373 -4.9997 16 1 6.0279 -2.4282 -4.6351 17 1 3.8131 -3.2570 -5.1724 18 1 4.6630 -1.2687 -6.2702 19 6 3.2447 2.5136 -2.7351 20 6 2.0301 2.4991 -3.6861 21 6 2.1668 3.8134 -4.4956 22 6 3.6964 3.9250 -4.7118 23 6 4.3036 3.4202 -3.3866 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.7536 1.9291 0.9324 30 1 1.6036 1.9822 -0.8404 31 1 3.9191 2.4700 -0.2327 32 1 3.7456 -0.1695 1.2864 33 1 5.2596 0.7162 0.9835 34 1 4.2627 2.7163 2.1312 35 1 2.8309 1.7345 2.5239 36 1 5.6986 1.1163 3.3666 37 1 4.4273 1.7794 4.4209 38 1 4.2669 0.1345 3.7594 39 1 3.2169 -2.5052 -2.5844 40 1 2.9544 2.9165 -1.7647 41 1 2.0757 1.6359 -4.3500 42 1 1.1003 2.4954 -3.1172 43 1 1.7951 4.6612 -3.9202 44 1 1.6461 3.7385 -5.4502 45 1 3.9816 4.9616 -4.8917 46 1 4.0135 3.2936 -5.5417 47 1 4.5267 4.2634 -2.7328 48 1 5.2115 2.8507 -3.5854 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211783766.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:04 Heat of formation + Delta-G solvation = -51.225602 kcal Electronic energy + Delta-G solvation = -24681.899533 eV Core-core repulsion = 21543.270020 eV Total energy + Delta-G solvation = -3138.629513 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.22077 -37.11510 -35.48498 -33.28229 -32.95600 -31.50231 -29.83292 -28.05151 -26.79738 -25.78772 -24.87123 -22.79912 -21.44223 -20.28415 -20.02140 -19.34410 -18.35812 -15.94461 -15.82773 -15.34426 -14.91690 -14.55263 -14.28270 -14.07718 -13.47915 -13.38366 -13.14326 -12.76920 -12.72786 -12.61357 -12.24665 -11.61859 -11.45970 -11.35523 -11.28425 -10.99138 -10.88234 -10.81580 -10.63126 -10.57775 -10.50696 -10.44739 -10.39781 -10.24800 -10.09965 -10.07042 -9.88069 -9.76340 -9.60778 -9.51153 -8.78820 -7.66518 -6.79582 -5.75703 -3.64600 3.39489 3.44301 3.46707 4.41757 4.63095 5.00196 5.23341 5.24920 5.29622 5.32619 5.46953 5.53590 5.55356 5.63146 5.73534 5.81368 5.93768 5.96367 6.02590 6.08755 6.11409 6.14983 6.16641 6.21920 6.24752 6.28035 6.31992 6.35287 6.39839 6.45365 6.46708 6.53360 6.57431 6.62563 6.63159 6.71745 6.84116 6.94680 6.97725 7.02656 7.12525 7.21379 7.50599 7.75490 8.40397 9.24286 9.41487 9.91360 10.62847 11.14979 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.012418 B = 0.007725 C = 0.006238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.315934 B = 3623.695351 C = 4487.482951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C -0.102 4.102 4 C -0.103 4.103 5 C -0.094 4.094 6 C -0.125 4.125 7 C -0.150 4.150 8 C 0.455 3.545 9 O -0.508 6.508 10 N -0.452 5.452 11 C -0.320 4.320 12 H 0.077 0.923 13 C 0.043 3.957 14 N -0.799 5.799 15 Si 0.904 3.096 16 H -0.284 1.284 17 H -0.290 1.290 18 H -0.278 1.278 19 C 0.129 3.871 20 C -0.126 4.126 21 C -0.123 4.123 22 C -0.118 4.118 23 C -0.134 4.134 24 H 0.047 0.953 25 H 0.045 0.955 26 H 0.038 0.962 27 H 0.114 0.886 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.046 0.954 38 H 0.052 0.948 39 H 0.256 0.744 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.052 0.948 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.052 0.948 46 H 0.064 0.936 47 H 0.051 0.949 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.027 9.183 4.379 10.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.177 4.177 3 C -0.139 4.139 4 C -0.125 4.125 5 C -0.132 4.132 6 C -0.162 4.162 7 C -0.207 4.207 8 C 0.242 3.758 9 O -0.383 6.383 10 N -0.174 5.174 11 C -0.447 4.447 12 H 0.095 0.905 13 C -0.167 4.167 14 N -0.436 5.436 15 Si 0.733 3.267 16 H -0.211 1.211 17 H -0.217 1.217 18 H -0.203 1.203 19 C 0.024 3.976 20 C -0.165 4.165 21 C -0.161 4.161 22 C -0.156 4.156 23 C -0.173 4.173 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.132 0.868 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.083 0.917 47 H 0.070 0.930 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.866 8.421 4.513 9.975 hybrid contribution 0.269 -0.437 -0.619 0.804 sum -2.596 7.985 3.894 9.255 Atomic orbital electron populations 1.21709 0.97534 1.00568 1.00181 1.21780 0.94038 0.96806 1.05043 1.21552 0.94284 0.97816 1.00295 1.21319 0.96064 0.99177 0.95908 1.21337 1.00705 0.99003 0.92120 1.21610 1.00174 0.99191 0.95255 1.21758 1.00569 1.00782 0.97590 1.19461 0.85710 0.87636 0.82943 1.90524 1.43438 1.19676 1.84653 1.43456 1.57650 1.11179 1.05094 1.18941 1.44297 0.88917 0.92592 0.90533 1.24965 0.97351 0.97418 0.96923 1.69959 1.34862 1.10185 1.28624 0.86299 0.79023 0.79896 0.81472 1.21099 1.21655 1.20288 1.21681 0.92411 0.85924 0.97624 1.22683 0.97136 0.97956 0.98683 1.22457 0.96127 0.97989 0.99543 1.22265 0.95525 0.99543 0.98224 1.22546 1.00139 0.98510 0.96115 0.93390 0.93572 0.94307 0.86753 0.93184 0.93221 0.92358 0.91765 0.91203 0.92314 0.92690 0.92217 0.92966 0.93469 0.92895 0.93297 0.90938 0.89171 0.92938 0.92503 0.92381 0.92937 0.91750 0.92997 0.90816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.91 37.16 0.37 -2.01 16 2 C -0.14 -2.73 5.37 -26.73 -0.14 -2.88 16 3 C -0.10 -1.81 4.58 -26.73 -0.12 -1.93 16 4 C -0.10 -1.99 1.62 -91.77 -0.15 -2.14 16 5 C -0.09 -1.71 3.88 -26.73 -0.10 -1.81 16 6 C -0.12 -1.78 5.60 -26.73 -0.15 -1.93 16 7 C -0.15 -1.90 9.91 37.16 0.37 -1.53 16 8 C 0.46 11.13 4.62 -10.99 -0.05 11.08 16 9 O -0.51 -14.55 12.47 5.55 0.07 -14.48 16 10 N -0.45 -10.75 2.51 -106.55 -0.27 -11.02 16 11 C -0.32 -8.40 7.42 -14.94 -0.11 -8.51 16 12 H 0.08 1.97 7.64 -52.48 -0.40 1.57 16 13 C 0.04 1.18 4.64 -17.47 -0.08 1.10 16 14 N -0.80 -22.76 9.02 55.50 0.50 -22.26 16 15 Si 0.90 21.81 29.57 -169.99 -5.03 16.78 16 16 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 C 0.13 2.48 2.49 -66.82 -0.17 2.31 16 20 C -0.13 -2.28 6.40 -25.03 -0.16 -2.44 16 21 C -0.12 -1.81 6.91 -24.70 -0.17 -1.98 16 22 C -0.12 -1.78 6.83 -25.08 -0.17 -1.95 16 23 C -0.13 -2.31 6.24 -25.62 -0.16 -2.47 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.11 2.77 5.55 -51.93 -0.29 2.48 16 28 H 0.05 0.98 6.71 -51.93 -0.35 0.63 16 29 H 0.05 0.77 6.47 -51.92 -0.34 0.43 16 30 H 0.06 1.05 6.33 -51.93 -0.33 0.72 16 31 H 0.06 1.16 6.99 -51.93 -0.36 0.80 16 32 H 0.07 1.40 6.42 -51.93 -0.33 1.06 16 33 H 0.06 1.15 8.11 -51.93 -0.42 0.72 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.82 6.72 -51.93 -0.35 0.47 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.26 7.23 8.32 -40.82 -0.34 6.89 16 40 H 0.07 1.31 4.51 -51.93 -0.23 1.07 16 41 H 0.09 1.90 6.79 -51.93 -0.35 1.55 16 42 H 0.05 0.90 8.10 -51.92 -0.42 0.48 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.07 1.43 7.49 -51.93 -0.39 1.04 16 LS Contribution 355.15 15.07 5.35 5.35 Total: -1.00 -29.33 355.15 -9.15 -38.48 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -8.77 Total: 4.25 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: -1.00 Total: -17.10 kcal Atomic # 7 Polarization: -33.52 SS G_CDS: 0.23 Total: -33.28 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.07 Total: -14.48 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.33 -9.15 -38.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211783766.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.747 kcal (2) G-P(sol) polarization free energy of solvation -29.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds