Wall clock time and date at job start Tue Mar 31 2020 05:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86790 * 120.00366 * 2 1 4 4 H 1.48501 * 109.47136 * 269.99879 * 3 2 1 5 5 H 1.48503 * 109.47475 * 29.99239 * 3 2 1 6 6 H 1.48496 * 109.47460 * 149.99482 * 3 2 1 7 7 C 1.37883 * 119.99462 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99437 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99995 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46994 * 179.97438 * 9 7 2 11 11 N 1.46894 * 109.47045 * 180.02562 * 10 9 7 12 12 C 1.46846 * 110.99591 * 51.76271 * 11 10 9 13 13 C 1.53036 * 109.51547 * 185.85135 * 12 11 10 14 14 C 1.53120 * 109.27866 * 300.81393 * 13 12 11 15 15 C 1.53122 * 109.16047 * 57.65332 * 14 13 12 16 16 C 1.46852 * 110.99825 * 175.96833 * 11 10 9 17 17 H 1.09005 * 109.45619 * 294.16209 * 16 11 10 18 18 C 1.52991 * 109.46604 * 54.13936 * 16 11 10 19 19 H 1.09005 * 109.47590 * 294.14963 * 18 16 11 20 20 C 1.52999 * 109.47615 * 174.14658 * 18 16 11 21 21 C 1.52991 * 109.47615 * 179.97438 * 20 18 16 22 22 C 1.53007 * 109.47160 * 60.00185 * 21 20 18 23 23 C 1.52999 * 109.46701 * 299.99975 * 22 21 20 24 24 C 1.52999 * 109.47182 * 60.00309 * 23 22 21 25 25 H 1.09000 * 109.47193 * 179.97438 * 24 23 22 26 26 O 1.42894 * 109.47521 * 59.99418 * 24 23 22 27 27 H 0.96999 * 119.99495 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.47011 * 60.00484 * 9 7 2 29 29 H 1.08994 * 109.47178 * 300.00130 * 9 7 2 30 30 H 1.09000 * 109.47038 * 60.00048 * 10 9 7 31 31 H 1.09006 * 109.46855 * 300.00585 * 10 9 7 32 32 H 1.08992 * 109.47257 * 65.82837 * 12 11 10 33 33 H 1.09000 * 109.45015 * 305.85247 * 12 11 10 34 34 H 1.09001 * 109.50368 * 180.87204 * 13 12 11 35 35 H 1.09002 * 109.50630 * 60.75415 * 13 12 11 36 36 H 1.09001 * 109.51761 * 297.74921 * 14 13 12 37 37 H 1.08997 * 109.52358 * 177.56231 * 14 13 12 38 38 H 1.08995 * 109.50198 * 182.40951 * 15 14 13 39 39 H 1.08997 * 109.53043 * 62.30721 * 15 14 13 40 40 H 1.09005 * 109.46891 * 300.00733 * 20 18 16 41 41 H 1.09002 * 109.46606 * 59.99772 * 20 18 16 42 42 H 1.08996 * 109.47292 * 300.00305 * 21 20 18 43 43 H 1.09000 * 109.47303 * 179.97438 * 21 20 18 44 44 H 1.08998 * 109.46839 * 180.02562 * 22 21 20 45 45 H 1.08996 * 109.46921 * 59.99892 * 22 21 20 46 46 H 1.08996 * 109.47365 * 299.99644 * 23 22 21 47 47 H 1.09002 * 109.46595 * 179.97438 * 23 22 21 48 48 H 0.96707 * 113.99819 * 60.00172 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 7 1.5105 -4.9343 -0.0001 12 6 0.5129 -4.9653 -1.0773 13 6 -0.3289 -6.2377 -0.9580 14 6 0.5876 -7.4608 -1.0505 15 6 1.6471 -7.3794 0.0520 16 6 2.4317 -6.0739 -0.0965 17 1 2.9293 -6.0575 -1.0662 18 6 3.4784 -5.9788 1.0153 19 1 4.1057 -5.1029 0.8498 20 6 4.3477 -7.2378 1.0064 21 6 5.3948 -7.1425 2.1178 22 6 4.6922 -7.0175 3.4712 23 6 3.8229 -5.7585 3.4801 24 6 2.7757 -5.8539 2.3687 25 1 2.1561 -4.9571 2.3753 26 8 1.9534 -7.0021 2.5862 27 1 -0.4849 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8898 29 1 0.6239 -2.5567 0.8902 30 1 2.8717 -3.6045 0.8905 31 1 2.8718 -3.6044 -0.8895 32 1 1.0196 -4.9542 -2.0422 33 1 -0.1350 -4.0924 -0.9972 34 1 -1.0591 -6.2681 -1.7667 35 1 -0.8469 -6.2429 0.0011 36 1 1.0762 -7.4769 -2.0247 37 1 -0.0022 -8.3685 -0.9226 38 1 2.3287 -8.2255 -0.0351 39 1 1.1608 -7.4028 1.0272 40 1 3.7203 -8.1137 1.1718 41 1 4.8486 -7.3266 0.0424 42 1 6.0221 -6.2666 1.9519 43 1 6.0138 -8.0396 2.1117 44 1 5.4382 -6.9491 4.2629 45 1 4.0649 -7.8933 3.6371 46 1 4.4501 -4.8827 3.3142 47 1 3.3220 -5.6697 4.4441 48 1 1.4764 -6.9906 3.4274 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228493249.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:57 Heat of formation + Delta-G solvation = -73.907634 kcal Electronic energy + Delta-G solvation = -24330.758186 eV Core-core repulsion = 21191.145106 eV Total energy + Delta-G solvation = -3139.613080 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.08457 -37.67828 -34.87192 -34.11786 -32.62157 -32.17825 -29.74700 -28.93388 -28.17411 -24.98808 -23.52717 -23.05417 -22.23622 -20.75238 -20.06957 -19.70310 -18.62438 -16.56709 -16.49438 -15.65666 -15.04272 -14.90493 -14.52861 -14.26444 -14.01216 -13.89805 -13.47772 -13.34702 -12.85108 -12.64195 -12.59437 -12.43992 -11.99618 -11.88029 -11.83534 -11.54014 -11.09264 -11.01118 -10.89723 -10.84197 -10.67654 -10.55268 -10.43526 -10.28772 -10.08816 -9.81507 -9.65413 -9.57820 -9.18340 -9.15969 -9.00959 -8.31855 -7.53133 -5.99373 -4.01342 3.31634 3.38052 3.41089 4.33562 4.46363 4.68793 4.81737 4.83512 4.99699 5.18961 5.27973 5.34258 5.35016 5.37003 5.44913 5.57434 5.60644 5.67097 5.74510 5.76290 5.90119 5.95112 6.03147 6.07495 6.09633 6.10853 6.19028 6.24705 6.27561 6.32308 6.36123 6.40655 6.42439 6.50749 6.56977 6.62538 6.67010 6.76764 6.99926 7.11265 7.61799 7.71603 7.89056 7.92735 7.95891 8.10409 8.45484 9.05720 9.62191 11.11952 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016023 B = 0.005424 C = 0.004438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.088768 B = 5160.793107 C = 6308.086710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.024 3.976 10 C 0.060 3.940 11 N -0.528 5.528 12 C 0.054 3.946 13 C -0.114 4.114 14 C -0.121 4.121 15 C -0.122 4.122 16 C 0.096 3.904 17 H 0.024 0.976 18 C -0.072 4.072 19 H 0.078 0.922 20 C -0.112 4.112 21 C -0.118 4.118 22 C -0.112 4.112 23 C -0.156 4.156 24 C 0.119 3.881 25 H 0.075 0.925 26 O -0.549 6.549 27 H 0.260 0.740 28 H 0.019 0.981 29 H 0.023 0.977 30 H 0.062 0.938 31 H 0.014 0.986 32 H 0.021 0.979 33 H 0.089 0.911 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.046 0.954 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.113 0.887 40 H 0.075 0.925 41 H 0.053 0.947 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.052 0.948 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.060 0.940 48 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.500 -16.491 4.060 17.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.067 4.067 11 N -0.253 5.253 12 C -0.074 4.074 13 C -0.151 4.151 14 C -0.159 4.159 15 C -0.159 4.159 16 C -0.013 4.013 17 H 0.042 0.958 18 C -0.091 4.091 19 H 0.096 0.904 20 C -0.149 4.149 21 C -0.156 4.156 22 C -0.150 4.150 23 C -0.193 4.193 24 C 0.061 3.939 25 H 0.093 0.907 26 O -0.354 6.354 27 H 0.070 0.930 28 H 0.037 0.963 29 H 0.042 0.958 30 H 0.080 0.920 31 H 0.032 0.968 32 H 0.039 0.961 33 H 0.108 0.892 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.131 0.869 40 H 0.094 0.906 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.079 0.921 48 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 5.344 -16.565 3.911 17.839 hybrid contribution 0.828 1.370 -0.378 1.645 sum 6.172 -15.195 3.533 16.777 Atomic orbital electron populations 1.69971 1.05990 1.26524 1.50773 1.24982 0.94811 0.99105 0.95356 0.86623 0.79863 0.83617 0.78063 1.20738 1.21214 1.19921 1.21195 0.92933 0.91096 1.50691 0.92899 1.19186 0.94057 0.90373 0.97690 1.22348 0.97032 0.88681 0.98655 1.62036 1.15428 1.02272 1.45543 1.22127 0.94978 0.98582 0.91746 1.21570 0.97499 0.94392 1.01686 1.21619 0.97817 0.97690 0.98753 1.22066 0.97227 0.95107 1.01451 1.21498 0.92216 0.92200 0.95349 0.95797 1.21225 0.95671 0.98286 0.93887 0.90420 1.21571 0.96876 0.98800 0.97694 1.21518 0.97692 1.01142 0.95199 1.21415 0.98359 0.98460 0.96719 1.22309 0.99022 0.98601 0.99415 1.21682 0.90306 0.89123 0.92827 0.90697 1.86528 1.62890 1.44397 1.41619 0.93034 0.96305 0.95817 0.91957 0.96756 0.96114 0.89229 0.92588 0.91346 0.93481 0.92810 0.92944 0.86911 0.90612 0.92813 0.92431 0.92513 0.92906 0.91554 0.91316 0.92088 0.79090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 2 C 0.06 1.68 5.46 -17.81 -0.10 1.58 16 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.65 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.62 4.47 -27.88 -0.12 0.50 16 10 C 0.06 1.26 4.10 -3.83 -0.02 1.24 16 11 N -0.53 -9.62 3.73 -226.69 -0.84 -10.46 16 12 C 0.05 0.97 5.03 -3.83 -0.02 0.95 16 13 C -0.11 -1.71 6.09 -26.65 -0.16 -1.87 16 14 C -0.12 -1.65 6.00 -26.61 -0.16 -1.81 16 15 C -0.12 -1.70 4.29 -26.65 -0.11 -1.82 16 16 C 0.10 1.50 1.73 -67.72 -0.12 1.39 16 17 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 18 C -0.07 -1.02 1.45 -90.62 -0.13 -1.15 16 19 H 0.08 1.20 6.78 -51.93 -0.35 0.85 16 20 C -0.11 -1.35 4.54 -26.74 -0.12 -1.47 16 21 C -0.12 -1.27 5.92 -26.73 -0.16 -1.43 16 22 C -0.11 -1.17 5.78 -26.73 -0.15 -1.33 16 23 C -0.16 -1.81 5.64 -26.73 -0.15 -1.96 16 24 C 0.12 1.60 2.79 -26.73 -0.07 1.52 16 25 H 0.08 1.22 6.58 -51.93 -0.34 0.88 16 26 O -0.55 -6.63 8.23 -35.23 -0.29 -6.92 16 27 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.02 0.51 6.19 -51.93 -0.32 0.19 16 29 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.06 1.29 5.83 -51.93 -0.30 0.99 16 31 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 1.83 5.84 -51.93 -0.30 1.53 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.69 6.39 -51.93 -0.33 0.36 16 39 H 0.11 1.66 4.91 -50.93 -0.25 1.41 16 40 H 0.08 0.94 5.90 -51.93 -0.31 0.63 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.70 7.68 -51.93 -0.40 0.30 16 46 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 48 H 0.36 3.26 9.08 46.63 0.42 3.68 16 LS Contribution 343.71 15.07 5.18 5.18 Total: -1.00 -29.48 343.71 -10.10 -39.58 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -7.94 Total: 2.67 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -1.91 Total: -20.66 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: -0.11 Total: -36.51 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -0.29 Total: -6.92 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.48 -10.10 -39.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228493249.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.328 kcal (2) G-P(sol) polarization free energy of solvation -29.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds