Wall clock time and date at job start Tue Mar 31 2020 06:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47245 * 2 1 4 4 C 1.52994 * 109.47301 * 239.99899 * 2 1 3 5 5 C 1.50698 * 109.47191 * 60.00179 * 4 2 1 6 6 H 1.08001 * 120.00433 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00155 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00190 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00097 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47207 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47330 * 120.00141 * 9 7 5 12 12 H 1.48507 * 109.46864 * 240.00029 * 9 7 5 13 13 C 1.53001 * 109.47001 * 119.99886 * 2 1 3 14 14 N 1.46898 * 109.47172 * 294.73993 * 13 2 1 15 15 C 1.46770 * 111.00059 * 86.82355 * 14 13 2 16 16 C 1.53165 * 109.86679 * 185.29642 * 15 14 13 17 17 C 1.52911 * 108.93025 * 301.23427 * 16 15 14 18 18 H 1.08996 * 109.43762 * 298.78452 * 17 16 15 19 19 O 1.42695 * 110.61493 * 178.28347 * 17 16 15 20 20 C 1.43055 * 113.61748 * 178.20324 * 19 17 16 21 21 C 1.53016 * 109.78787 * 60.74767 * 20 19 17 22 22 C 1.53303 * 109.49230 * 303.22644 * 21 20 19 23 23 C 1.52995 * 108.65414 * 56.57811 * 22 21 20 24 24 H 1.08998 * 109.49048 * 61.87344 * 23 22 21 25 25 C 1.46976 * 111.00227 * 211.50718 * 14 13 2 26 26 H 1.08998 * 109.47241 * 312.02933 * 1 2 3 27 27 H 1.09001 * 109.46668 * 72.02406 * 1 2 3 28 28 H 1.09000 * 109.47132 * 192.02096 * 1 2 3 29 29 H 1.08998 * 109.47144 * 179.97438 * 3 2 1 30 30 H 1.09005 * 109.46679 * 299.99862 * 3 2 1 31 31 H 1.08998 * 109.47076 * 59.99496 * 3 2 1 32 32 H 1.09001 * 109.47715 * 179.97438 * 4 2 1 33 33 H 1.09001 * 109.47297 * 299.99796 * 4 2 1 34 34 H 0.96996 * 120.00566 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.47206 * 174.74350 * 13 2 1 36 36 H 1.08993 * 109.47439 * 54.74087 * 13 2 1 37 37 H 1.08997 * 109.40352 * 305.42221 * 15 14 13 38 38 H 1.09004 * 109.40013 * 65.26358 * 15 14 13 39 39 H 1.08996 * 109.56265 * 61.07382 * 16 15 14 40 40 H 1.09004 * 109.55907 * 181.40112 * 16 15 14 41 41 H 1.08995 * 109.41977 * 300.64711 * 20 19 17 42 42 H 1.09001 * 109.35997 * 180.81016 * 20 19 17 43 43 H 1.09001 * 109.47022 * 183.21764 * 21 20 19 44 44 H 1.09008 * 109.46173 * 63.23183 * 21 20 19 45 45 H 1.09001 * 109.60419 * 296.82510 * 22 21 20 46 46 H 1.08996 * 109.74225 * 176.40760 * 22 21 20 47 47 H 1.09006 * 109.52538 * 294.19094 * 25 14 13 48 48 H 1.08996 * 109.53126 * 54.39509 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5378 -0.0109 -2.4796 6 1 0.9165 0.8670 -2.3807 7 6 1.8704 -0.4822 -3.7319 8 7 2.6265 -1.5515 -3.8526 9 14 1.2472 0.3980 -5.2572 10 1 0.4218 1.5644 -4.8531 11 1 2.4019 0.8645 -6.0661 12 1 0.4220 -0.5357 -6.0650 13 6 2.0400 -0.7212 1.2493 14 7 1.6567 0.0407 2.4453 15 6 0.3142 -0.3375 2.9021 16 6 -0.1120 0.5616 4.0665 17 6 0.9019 0.4168 5.2019 18 1 0.9169 -0.6176 5.5451 19 8 0.5602 1.2712 6.2926 20 6 1.4464 1.1567 7.4097 21 6 2.8667 1.5364 6.9853 22 6 3.3050 0.6494 5.8143 23 6 2.2904 0.8007 4.6792 24 1 2.2774 1.8361 4.3387 25 6 2.6548 -0.1171 3.5126 26 1 -0.3633 0.6880 0.7633 27 1 -0.3633 0.3172 -0.9775 28 1 -0.3633 -1.0051 0.2140 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 3.1300 -0.7209 -1.2495 33 1 1.6767 -1.7489 -1.2492 34 1 2.8603 -1.8833 -4.7335 35 1 3.1259 -0.8035 1.2035 36 1 1.6018 -1.7180 1.2977 37 1 -0.3929 -0.2254 2.0802 38 1 0.3234 -1.3762 3.2328 39 1 -0.1422 1.5993 3.7342 40 1 -1.0989 0.2604 4.4179 41 1 1.4394 0.1294 7.7740 42 1 1.1146 1.8252 8.2041 43 1 3.5473 1.3927 7.8245 44 1 2.8863 2.5816 6.6766 45 1 3.3405 -0.3912 6.1370 46 1 4.2909 0.9585 5.4672 47 1 2.6638 -1.1527 3.8528 48 1 3.6404 0.1510 3.1323 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245769587.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:40 Heat of formation + Delta-G solvation = -65.675157 kcal Electronic energy + Delta-G solvation = -23640.193088 eV Core-core repulsion = 20500.936995 eV Total energy + Delta-G solvation = -3139.256093 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.30155 -38.16354 -35.74993 -33.98469 -32.60512 -31.50518 -30.42511 -27.06418 -26.45749 -26.19649 -25.13331 -23.50537 -22.76150 -22.20554 -20.44192 -19.98438 -17.84472 -16.60127 -16.16677 -15.97444 -15.46540 -15.15263 -14.82910 -14.45646 -14.29728 -13.97946 -13.44754 -13.28984 -12.91796 -12.73225 -12.58316 -12.53152 -12.19409 -11.97883 -11.57201 -11.43408 -11.29239 -11.09480 -10.96239 -10.88876 -10.77070 -10.68262 -10.57760 -10.40497 -10.25618 -10.18291 -9.87612 -9.58556 -9.44063 -8.91921 -8.81437 -8.29316 -7.91745 -5.93879 -3.93452 3.34157 3.42061 3.45867 3.60350 4.08077 4.51432 4.54723 4.60158 4.69269 4.74434 5.00173 5.06477 5.15839 5.34608 5.36598 5.41057 5.42078 5.46988 5.50845 5.59039 5.67423 5.71500 5.78560 5.84599 5.89248 5.91917 6.01659 6.08216 6.10555 6.18680 6.26581 6.36707 6.38460 6.60214 6.77033 6.85710 6.91603 7.10704 7.27543 7.28665 7.33048 7.43986 7.52165 7.74550 7.89893 8.07057 8.52139 9.12329 9.69207 11.17882 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.040130 B = 0.003463 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.565804 B = 8084.028259 C = 8296.502996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.052 4.052 3 C -0.114 4.114 4 C 0.033 3.967 5 C -0.504 4.504 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.886 3.114 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.286 1.286 13 C 0.067 3.933 14 N -0.532 5.532 15 C 0.044 3.956 16 C -0.107 4.107 17 C 0.094 3.906 18 H 0.050 0.950 19 O -0.379 6.379 20 C 0.061 3.939 21 C -0.154 4.154 22 C -0.117 4.117 23 C -0.113 4.113 24 H 0.088 0.912 25 C 0.065 3.935 26 H 0.043 0.957 27 H 0.065 0.935 28 H 0.035 0.965 29 H 0.035 0.965 30 H 0.052 0.948 31 H 0.045 0.955 32 H 0.013 0.987 33 H 0.012 0.988 34 H 0.258 0.742 35 H 0.064 0.936 36 H 0.033 0.967 37 H 0.103 0.897 38 H 0.026 0.974 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.046 0.954 42 H 0.090 0.910 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.061 0.939 46 H 0.069 0.931 47 H 0.027 0.973 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.209 3.431 21.441 21.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.052 4.052 3 C -0.171 4.171 4 C -0.005 4.005 5 C -0.542 4.542 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.715 3.285 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.060 4.060 14 N -0.256 5.256 15 C -0.084 4.084 16 C -0.145 4.145 17 C 0.037 3.963 18 H 0.068 0.932 19 O -0.298 6.298 20 C -0.015 4.015 21 C -0.192 4.192 22 C -0.155 4.155 23 C -0.132 4.132 24 H 0.106 0.894 25 C -0.064 4.064 26 H 0.062 0.938 27 H 0.084 0.916 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.032 0.968 33 H 0.030 0.970 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.052 0.948 37 H 0.121 0.879 38 H 0.044 0.956 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.064 0.936 42 H 0.109 0.891 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.079 0.921 46 H 0.088 0.912 47 H 0.045 0.955 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.305 3.927 21.178 21.579 hybrid contribution 0.151 -0.764 -0.650 1.014 sum -1.154 3.163 20.529 20.803 Atomic orbital electron populations 1.21983 0.96228 0.99268 1.01505 1.20563 0.94792 0.96043 0.93817 1.21569 0.99355 0.95952 1.00214 1.19133 0.95992 0.95025 0.90332 1.21287 1.30537 1.11826 0.90580 0.92171 1.25017 0.95459 0.95126 0.99046 1.69974 1.37472 1.23285 1.23124 0.86621 0.78608 0.79751 0.83539 1.19742 1.21196 1.21230 1.22327 0.99791 0.94330 0.89588 1.61798 1.01167 1.57604 1.04996 1.22497 0.92359 0.95754 0.97788 1.21553 0.97535 1.02147 0.93225 1.22126 0.94474 0.92671 0.87058 0.93224 1.87939 1.51941 1.64379 1.25514 1.22526 0.89561 1.00630 0.88830 1.22171 0.97262 1.00981 0.98781 1.21607 0.99121 0.99735 0.95068 1.21778 0.94880 1.01876 0.94673 0.89372 1.22059 0.96298 0.96703 0.91310 0.93787 0.91600 0.94562 0.94590 0.92897 0.93590 0.96825 0.97006 0.93271 0.91786 0.94846 0.87923 0.95607 0.90208 0.91139 0.93560 0.89142 0.91067 0.90980 0.92068 0.91198 0.95472 0.90510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 6.86 37.16 0.25 -2.24 16 2 C -0.05 -1.03 0.61 -154.51 -0.09 -1.12 16 3 C -0.11 -2.22 7.97 37.16 0.30 -1.92 16 4 C 0.03 0.82 4.04 -27.89 -0.11 0.71 16 5 C -0.50 -13.80 7.48 -34.44 -0.26 -14.06 16 6 H 0.06 1.61 5.76 -52.49 -0.30 1.31 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -26.92 13.29 55.43 0.74 -26.19 16 9 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 C 0.07 1.15 4.25 -3.83 -0.02 1.13 16 14 N -0.53 -7.78 3.48 -234.67 -0.82 -8.59 16 15 C 0.04 0.59 4.91 -3.81 -0.02 0.57 16 16 C -0.11 -1.29 5.81 -26.69 -0.16 -1.45 16 17 C 0.09 1.10 2.49 -26.65 -0.07 1.04 16 18 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 19 O -0.38 -4.55 10.49 -35.23 -0.37 -4.92 16 20 C 0.06 0.55 6.83 37.17 0.25 0.80 16 21 C -0.15 -1.27 6.12 -26.57 -0.16 -1.44 16 22 C -0.12 -1.09 5.39 -26.58 -0.14 -1.23 16 23 C -0.11 -1.29 2.27 -90.57 -0.21 -1.49 16 24 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 25 C 0.06 0.82 4.71 -3.86 -0.02 0.80 16 26 H 0.04 0.73 6.20 -51.93 -0.32 0.41 16 27 H 0.07 1.37 6.32 -51.93 -0.33 1.04 16 28 H 0.04 0.65 7.75 -51.93 -0.40 0.24 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 1.11 6.62 -51.93 -0.34 0.77 16 31 H 0.05 0.82 7.47 -51.93 -0.39 0.43 16 32 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.06 1.12 7.62 -51.93 -0.40 0.72 16 36 H 0.03 0.58 7.78 -51.93 -0.40 0.18 16 37 H 0.10 1.45 4.17 -51.93 -0.22 1.23 16 38 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.08 0.98 7.92 -51.93 -0.41 0.57 16 LS Contribution 351.34 15.07 5.29 5.29 Total: -1.00 -29.31 351.34 -9.71 -39.02 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -8.99 Total: -2.79 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: -0.54 Total: -18.47 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: -0.08 Total: -34.78 kcal Atomic # 8 Polarization: -4.55 SS G_CDS: -0.37 Total: -4.92 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.31 -9.71 -39.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245769587.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.658 kcal (2) G-P(sol) polarization free energy of solvation -29.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds