Wall clock time and date at job start Tue Mar 31 2020 05:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99748 * 2 1 4 4 H 1.48503 * 109.46791 * 239.99243 * 3 2 1 5 5 H 1.48493 * 109.47151 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47024 * 119.99785 * 3 2 1 7 7 C 1.37878 * 120.00287 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00158 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99897 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47217 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.47056 * 180.02562 * 10 9 7 12 12 C 1.46854 * 110.99958 * 45.78975 * 11 10 9 13 13 C 1.53039 * 109.52227 * 185.83752 * 12 11 10 14 14 C 1.53126 * 109.28009 * 300.82107 * 13 12 11 15 15 C 1.53099 * 109.15071 * 57.65227 * 14 13 12 16 16 C 1.46847 * 110.99897 * 169.99837 * 11 10 9 17 17 H 1.09002 * 109.46481 * 294.17890 * 16 11 10 18 18 C 1.53005 * 109.45924 * 54.15678 * 16 11 10 19 19 H 1.08997 * 109.47033 * 305.01781 * 18 16 11 20 20 C 1.52999 * 109.46874 * 65.02103 * 18 16 11 21 21 C 1.53005 * 109.46910 * 179.97438 * 20 18 16 22 22 C 1.53000 * 109.47268 * 300.00291 * 21 20 18 23 23 C 1.52999 * 109.47193 * 59.99669 * 22 21 20 24 24 C 1.53002 * 109.46553 * 185.01844 * 18 16 11 25 25 H 1.08997 * 109.47399 * 299.99712 * 24 18 16 26 26 O 1.42899 * 109.47385 * 60.00261 * 24 18 16 27 27 H 0.96999 * 120.00006 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.46781 * 60.00014 * 9 7 2 29 29 H 1.08994 * 109.47303 * 300.00535 * 9 7 2 30 30 H 1.08992 * 109.47192 * 60.00187 * 10 9 7 31 31 H 1.09001 * 109.46718 * 300.00253 * 10 9 7 32 32 H 1.08993 * 109.46229 * 305.85774 * 12 11 10 33 33 H 1.09008 * 109.45822 * 65.82829 * 12 11 10 34 34 H 1.08994 * 109.50227 * 60.75933 * 13 12 11 35 35 H 1.08998 * 109.50241 * 180.83988 * 13 12 11 36 36 H 1.08990 * 109.52264 * 177.55890 * 14 13 12 37 37 H 1.09002 * 109.52383 * 297.68676 * 14 13 12 38 38 H 1.09007 * 109.48839 * 182.39531 * 15 14 13 39 39 H 1.09009 * 109.50682 * 62.29317 * 15 14 13 40 40 H 1.08992 * 109.47177 * 299.99792 * 20 18 16 41 41 H 1.09006 * 109.47442 * 60.00255 * 20 18 16 42 42 H 1.08996 * 109.47269 * 179.97438 * 21 20 18 43 43 H 1.09006 * 109.46537 * 60.00096 * 21 20 18 44 44 H 1.08997 * 109.46916 * 299.99437 * 22 21 20 45 45 H 1.08994 * 109.47314 * 179.97438 * 22 21 20 46 46 H 1.09004 * 109.47268 * 180.02562 * 23 22 21 47 47 H 1.08997 * 109.47379 * 60.00052 * 23 22 21 48 48 H 0.96700 * 114.00297 * 179.97438 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5109 -4.9343 -0.0001 12 6 0.4202 -4.9118 -0.9832 13 6 -0.4102 -6.1909 -0.8552 14 6 0.4918 -7.4052 -1.0934 15 6 1.6461 -7.3784 -0.0881 16 6 2.4171 -6.0650 -0.2382 17 1 2.8257 -5.9969 -1.2464 18 6 3.5597 -6.0254 0.7786 19 1 4.0537 -5.0549 0.7325 20 6 2.9987 -6.2458 2.1849 21 6 4.1413 -6.2069 3.2017 22 6 5.1511 -7.3095 2.8767 23 6 5.7120 -7.0890 1.4704 24 6 4.5697 -7.1278 0.4538 25 1 4.0758 -8.0983 0.5000 26 8 5.0937 -6.9219 -0.8596 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8897 29 1 0.6241 -2.5567 0.8902 30 1 2.8720 -3.6044 0.8905 31 1 2.8720 -3.6043 -0.8895 32 1 -0.2160 -4.0459 -0.8000 33 1 0.8382 -4.8492 -1.9880 34 1 -0.8396 -6.2474 0.1450 35 1 -1.2106 -6.1807 -1.5949 36 1 -0.0859 -8.3197 -0.9606 37 1 0.8899 -7.3699 -2.1076 38 1 2.3153 -8.2172 -0.2802 39 1 1.2489 -7.4535 0.9243 40 1 2.2791 -5.4606 2.4162 41 1 2.5047 -7.2165 2.2311 42 1 3.7417 -6.3635 4.2036 43 1 4.6356 -5.2364 3.1556 44 1 4.6568 -8.2798 2.9228 45 1 5.9653 -7.2814 3.6007 46 1 6.4310 -7.8748 1.2387 47 1 6.2063 -6.1187 1.4243 48 1 5.7422 -7.5851 -1.1328 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253089991.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:59 Heat of formation + Delta-G solvation = -81.022435 kcal Electronic energy + Delta-G solvation = -24053.533832 eV Core-core repulsion = 20913.612231 eV Total energy + Delta-G solvation = -3139.921601 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.04186 -37.80828 -35.48201 -34.13410 -32.64487 -32.14830 -29.67453 -28.92376 -28.15100 -24.96638 -23.69839 -23.14589 -22.40683 -20.73015 -20.19778 -19.72845 -18.45210 -17.20869 -16.47517 -15.56384 -15.14646 -14.64836 -14.49446 -14.26699 -14.17180 -13.97192 -13.67614 -13.48612 -12.98502 -12.79597 -12.71262 -12.42815 -11.99745 -11.96173 -11.70260 -11.47154 -11.18598 -11.06793 -10.95003 -10.89287 -10.74368 -10.60522 -10.42876 -10.27972 -10.21909 -10.00255 -9.75531 -9.69127 -9.47749 -9.18734 -8.97911 -8.28886 -7.51079 -5.95918 -3.97605 3.36155 3.40178 3.43000 4.20526 4.40625 4.53089 4.69466 4.79202 5.01549 5.06900 5.16890 5.20760 5.25797 5.30829 5.39795 5.42296 5.51643 5.57029 5.60577 5.67732 5.79267 5.85007 5.95046 5.99290 6.05230 6.10651 6.14042 6.18233 6.20652 6.23860 6.27568 6.34066 6.45177 6.49674 6.56364 6.61434 6.64364 6.72953 6.78736 7.05659 7.62069 7.67864 7.74571 7.92463 7.93941 8.12495 8.49486 9.09009 9.65702 11.15436 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015279 B = 0.005216 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.124470 B = 5366.431813 C = 6427.762045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.022 3.978 10 C 0.063 3.937 11 N -0.532 5.532 12 C 0.052 3.948 13 C -0.116 4.116 14 C -0.119 4.119 15 C -0.112 4.112 16 C 0.094 3.906 17 H 0.042 0.958 18 C -0.073 4.073 19 H 0.082 0.918 20 C -0.106 4.106 21 C -0.125 4.125 22 C -0.115 4.115 23 C -0.151 4.151 24 C 0.109 3.891 25 H 0.053 0.947 26 O -0.563 6.563 27 H 0.260 0.740 28 H 0.019 0.981 29 H 0.024 0.976 30 H 0.062 0.938 31 H 0.017 0.983 32 H 0.093 0.907 33 H 0.023 0.977 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.059 0.941 47 H 0.070 0.930 48 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.879 -18.662 2.328 20.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.558 4.558 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.063 4.063 11 N -0.257 5.257 12 C -0.076 4.076 13 C -0.154 4.154 14 C -0.157 4.157 15 C -0.149 4.149 16 C -0.015 4.015 17 H 0.060 0.940 18 C -0.091 4.091 19 H 0.100 0.900 20 C -0.144 4.144 21 C -0.162 4.162 22 C -0.153 4.153 23 C -0.189 4.189 24 C 0.050 3.950 25 H 0.071 0.929 26 O -0.368 6.368 27 H 0.070 0.930 28 H 0.037 0.963 29 H 0.042 0.958 30 H 0.081 0.919 31 H 0.035 0.965 32 H 0.111 0.889 33 H 0.041 0.959 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.089 0.911 48 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 6.103 -18.079 2.814 19.288 hybrid contribution 1.324 0.596 -0.861 1.688 sum 7.427 -17.483 1.953 19.095 Atomic orbital electron populations 1.69956 1.05985 1.26609 1.50835 1.24975 0.94812 0.99083 0.95365 0.86679 0.79598 0.83258 0.78586 1.20333 1.21298 1.20256 1.21164 0.92945 0.91087 1.50644 0.92910 1.19237 0.94121 0.90545 0.97636 1.22295 0.96979 0.88212 0.98844 1.62045 1.11356 1.03167 1.49117 1.22166 0.94042 0.98365 0.93047 1.21601 0.97483 0.94442 1.01830 1.21564 0.97063 0.98025 0.99023 1.21708 0.96771 0.96441 1.00004 1.21493 0.91612 0.91382 0.96988 0.93973 1.21185 0.94184 0.98596 0.95171 0.90017 1.21543 0.97545 1.02810 0.92488 1.21622 0.96700 0.98849 0.99075 1.21472 0.98740 0.99203 0.95842 1.22261 0.98281 1.02422 0.95913 1.21905 0.93204 0.98321 0.81554 0.92872 1.86606 1.62212 1.55452 1.32494 0.93007 0.96255 0.95798 0.91922 0.96462 0.88927 0.95868 0.91403 0.92269 0.92625 0.92745 0.92576 0.91046 0.89609 0.92058 0.91998 0.91821 0.92167 0.92160 0.92262 0.91139 0.78390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.10 13.29 55.43 0.74 -26.37 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.57 4.22 -27.88 -0.12 0.46 16 10 C 0.06 1.39 4.31 -3.83 -0.02 1.37 16 11 N -0.53 -9.88 4.09 -226.69 -0.93 -10.81 16 12 C 0.05 0.95 4.85 -3.83 -0.02 0.93 16 13 C -0.12 -1.70 6.09 -26.65 -0.16 -1.86 16 14 C -0.12 -1.56 6.00 -26.62 -0.16 -1.71 16 15 C -0.11 -1.48 4.64 -26.66 -0.12 -1.61 16 16 C 0.09 1.49 1.49 -67.72 -0.10 1.39 16 17 H 0.04 0.76 7.54 -51.93 -0.39 0.37 16 18 C -0.07 -1.05 1.34 -90.62 -0.12 -1.17 16 19 H 0.08 1.39 6.26 -51.93 -0.33 1.07 16 20 C -0.11 -1.40 4.60 -26.73 -0.12 -1.52 16 21 C -0.12 -1.42 5.92 -26.73 -0.16 -1.58 16 22 C -0.11 -1.11 5.92 -26.73 -0.16 -1.27 16 23 C -0.15 -1.54 5.54 -26.75 -0.15 -1.69 16 24 C 0.11 1.29 2.65 -26.75 -0.07 1.22 16 25 H 0.05 0.58 6.58 -51.93 -0.34 0.24 16 26 O -0.56 -7.08 12.56 -35.23 -0.44 -7.53 16 27 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.02 0.53 6.21 -51.93 -0.32 0.21 16 29 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 1.36 6.73 -51.93 -0.35 1.01 16 31 H 0.02 0.39 8.08 -51.93 -0.42 -0.02 16 32 H 0.09 1.92 5.81 -51.93 -0.30 1.62 16 33 H 0.02 0.44 8.14 -51.92 -0.42 0.01 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.67 6.61 -51.93 -0.34 0.33 16 39 H 0.07 0.95 6.30 -51.92 -0.33 0.62 16 40 H 0.09 1.33 7.75 -51.93 -0.40 0.93 16 41 H 0.06 0.74 6.33 -51.93 -0.33 0.41 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.37 2.93 9.08 45.56 0.41 3.34 16 LS Contribution 349.99 15.07 5.27 5.27 Total: -1.00 -30.79 349.99 -10.33 -41.12 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -8.05 Total: 2.05 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: -1.89 Total: -20.73 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: -0.19 Total: -37.18 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: -0.44 Total: -7.53 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.79 -10.33 -41.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253089991.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.903 kcal (2) G-P(sol) polarization free energy of solvation -30.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds