Wall clock time and date at job start Tue Mar 31 2020 05:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 119.99986 * 2 1 4 4 H 1.48501 * 109.47228 * 240.00040 * 3 2 1 5 5 H 1.48506 * 109.47148 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47389 * 119.99572 * 3 2 1 7 7 C 1.37873 * 120.00538 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00549 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99808 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47439 * 180.02562 * 9 7 2 11 11 N 1.46892 * 109.47224 * 180.02562 * 10 9 7 12 12 C 1.46854 * 110.99938 * 45.79118 * 11 10 9 13 13 C 1.53045 * 109.51881 * 185.83783 * 12 11 10 14 14 C 1.53117 * 109.28025 * 300.81969 * 13 12 11 15 15 C 1.53121 * 109.15934 * 57.65632 * 14 13 12 16 16 C 1.46850 * 111.00024 * 169.99841 * 11 10 9 17 17 H 1.08997 * 109.46526 * 294.17778 * 16 11 10 18 18 C 1.53003 * 109.45217 * 54.14927 * 16 11 10 19 19 H 1.09000 * 109.47358 * 306.79144 * 18 16 11 20 20 C 1.53006 * 109.46784 * 66.78756 * 18 16 11 21 21 C 1.52999 * 109.46842 * 179.97438 * 20 18 16 22 22 C 1.53001 * 109.47511 * 300.00432 * 21 20 18 23 23 C 1.52996 * 109.47098 * 59.99723 * 22 21 20 24 24 C 1.52995 * 109.46969 * 186.78447 * 18 16 11 25 25 H 1.09001 * 109.47034 * 60.00674 * 24 18 16 26 26 O 1.42895 * 109.47638 * 300.00180 * 24 18 16 27 27 H 0.96999 * 120.00525 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46724 * 60.00547 * 9 7 2 29 29 H 1.08994 * 109.47220 * 300.00648 * 9 7 2 30 30 H 1.08996 * 109.46958 * 60.00040 * 10 9 7 31 31 H 1.09001 * 109.46782 * 300.00133 * 10 9 7 32 32 H 1.08997 * 109.46424 * 65.82632 * 12 11 10 33 33 H 1.08997 * 109.44969 * 305.84649 * 12 11 10 34 34 H 1.08999 * 109.49828 * 180.87779 * 13 12 11 35 35 H 1.08997 * 109.49996 * 60.76249 * 13 12 11 36 36 H 1.09004 * 109.52135 * 297.75238 * 14 13 12 37 37 H 1.08999 * 109.57306 * 177.59764 * 14 13 12 38 38 H 1.08998 * 109.49804 * 182.40413 * 15 14 13 39 39 H 1.08994 * 109.53257 * 62.31022 * 15 14 13 40 40 H 1.08993 * 109.47369 * 299.99954 * 20 18 16 41 41 H 1.09000 * 109.46857 * 60.00081 * 20 18 16 42 42 H 1.09000 * 109.47049 * 60.00540 * 21 20 18 43 43 H 1.09001 * 109.47018 * 179.97438 * 21 20 18 44 44 H 1.09003 * 109.46978 * 180.02562 * 22 21 20 45 45 H 1.09004 * 109.46351 * 299.99927 * 22 21 20 46 46 H 1.09004 * 109.47349 * 60.00260 * 23 22 21 47 47 H 1.09001 * 109.46898 * 179.97438 * 23 22 21 48 48 H 0.96704 * 114.00152 * 180.02562 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6621 0.0027 11 7 1.5109 -4.9342 0.0033 12 6 0.4203 -4.9126 -0.9799 13 6 -0.4101 -6.1917 -0.8506 14 6 0.4919 -7.4061 -1.0878 15 6 1.6464 -7.3785 -0.0824 16 6 2.4172 -6.0652 -0.2339 17 1 2.8257 -5.9980 -1.2421 18 6 3.5598 -6.0244 0.7829 19 1 4.0336 -5.0431 0.7579 20 6 3.0049 -6.2872 2.1844 21 6 4.1475 -6.2471 3.2010 22 6 5.1794 -7.3212 2.8513 23 6 5.7342 -7.0584 1.4499 24 6 4.5919 -7.0983 0.4334 25 1 4.9872 -6.9110 -0.5650 26 8 3.9708 -8.3847 0.4663 27 1 -0.4851 0.8400 -0.0004 28 1 0.6242 -2.5575 -0.8881 29 1 0.6247 -2.5563 0.8919 30 1 2.8720 -3.6035 0.8927 31 1 2.8720 -3.6050 -0.8873 32 1 0.8381 -4.8509 -1.9847 33 1 -0.2159 -4.0466 -0.7972 34 1 -1.2101 -6.1825 -1.5909 35 1 -0.8396 -6.2472 0.1496 36 1 0.8908 -7.3711 -2.1016 37 1 -0.0852 -8.3211 -0.9549 38 1 2.3156 -8.2173 -0.2738 39 1 1.2498 -7.4532 0.9301 40 1 2.2695 -5.5222 2.4334 41 1 2.5311 -7.2685 2.2094 42 1 4.6217 -5.2659 3.1761 43 1 3.7522 -6.4338 4.1995 44 1 5.9932 -7.2928 3.5759 45 1 4.7052 -8.3023 2.8762 46 1 6.2084 -6.0772 1.4249 47 1 6.4697 -7.8233 1.2009 48 1 4.5679 -9.1154 0.2545 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253089992.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:01 Heat of formation + Delta-G solvation = -74.112770 kcal Electronic energy + Delta-G solvation = -24153.502946 eV Core-core repulsion = 21013.880971 eV Total energy + Delta-G solvation = -3139.621975 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.09310 -37.85864 -35.03388 -34.06201 -32.62815 -32.10719 -29.83105 -28.89035 -28.23863 -24.96041 -23.48257 -23.09283 -22.47752 -20.75808 -20.02687 -19.73620 -18.45305 -16.83533 -16.49623 -15.69980 -15.22762 -14.76152 -14.54359 -14.20033 -14.05758 -13.97691 -13.82949 -13.35923 -12.82421 -12.70545 -12.48290 -12.20294 -12.06201 -11.79762 -11.76462 -11.56226 -11.24093 -11.07287 -10.92048 -10.82179 -10.57909 -10.53807 -10.37271 -10.29589 -10.06134 -9.85084 -9.76697 -9.59470 -9.40679 -9.13409 -8.96093 -8.30737 -7.51497 -5.97617 -3.99699 3.34245 3.38681 3.40927 4.20267 4.42984 4.54167 4.75834 4.85903 4.92262 5.16562 5.25572 5.33456 5.36998 5.38746 5.45298 5.49416 5.56550 5.65357 5.67388 5.78449 5.84790 5.87532 6.00778 6.05815 6.09692 6.13970 6.21173 6.27534 6.29101 6.33643 6.39488 6.44309 6.54134 6.58316 6.67532 6.68476 6.74417 6.83334 6.89862 7.02834 7.62326 7.65255 7.73382 7.91366 7.93909 8.11464 8.47064 9.06920 9.63701 11.13711 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016712 B = 0.005112 C = 0.004201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.991333 B = 5476.133515 C = 6663.457456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.052 0.948 9 C 0.022 3.978 10 C 0.062 3.938 11 N -0.532 5.532 12 C 0.053 3.947 13 C -0.117 4.117 14 C -0.121 4.121 15 C -0.117 4.117 16 C 0.097 3.903 17 H 0.025 0.975 18 C -0.074 4.074 19 H 0.084 0.916 20 C -0.103 4.103 21 C -0.122 4.122 22 C -0.112 4.112 23 C -0.150 4.150 24 C 0.110 3.890 25 H 0.048 0.952 26 O -0.547 6.547 27 H 0.261 0.739 28 H 0.019 0.981 29 H 0.024 0.976 30 H 0.063 0.937 31 H 0.014 0.986 32 H 0.021 0.979 33 H 0.091 0.909 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.053 0.947 38 H 0.096 0.904 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.053 0.947 45 H 0.065 0.935 46 H 0.069 0.931 47 H 0.059 0.941 48 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.859 -18.044 1.385 19.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.719 3.281 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.016 4.016 10 C -0.065 4.065 11 N -0.257 5.257 12 C -0.075 4.075 13 C -0.154 4.154 14 C -0.159 4.159 15 C -0.154 4.154 16 C -0.012 4.012 17 H 0.043 0.957 18 C -0.093 4.093 19 H 0.102 0.898 20 C -0.140 4.140 21 C -0.160 4.160 22 C -0.149 4.149 23 C -0.188 4.188 24 C 0.051 3.949 25 H 0.066 0.934 26 O -0.353 6.353 27 H 0.070 0.930 28 H 0.038 0.962 29 H 0.042 0.958 30 H 0.081 0.919 31 H 0.033 0.967 32 H 0.040 0.960 33 H 0.110 0.890 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.114 0.886 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.084 0.916 46 H 0.088 0.912 47 H 0.077 0.923 48 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 6.968 -17.608 2.008 19.043 hybrid contribution 1.430 0.934 -1.050 2.004 sum 8.398 -16.675 0.958 18.695 Atomic orbital electron populations 1.69949 1.05999 1.26648 1.50699 1.24974 0.94808 0.99093 0.95345 0.86681 0.79603 0.83279 0.78556 1.20357 1.21281 1.20245 1.21154 0.92894 0.91098 1.50803 0.92943 1.19233 0.94130 0.90504 0.97691 1.22313 0.97064 0.88513 0.98581 1.62032 1.11383 1.03038 1.49219 1.22150 0.94035 0.98449 0.92818 1.21614 0.97506 0.94628 1.01697 1.21626 0.97496 0.97658 0.99126 1.22008 0.96741 0.97370 0.99301 1.21518 0.92162 0.92090 0.95411 0.95683 1.21277 0.94702 0.97004 0.96282 0.89818 1.21458 0.97277 1.02828 0.92429 1.21583 0.96777 0.98610 0.99016 1.21417 0.98245 0.99821 0.95454 1.22209 0.97765 1.02184 0.96596 1.21797 0.92534 0.84112 0.96421 0.93367 1.86670 1.39373 1.15825 1.93407 0.92971 0.96240 0.95766 0.91887 0.96738 0.96049 0.89047 0.92524 0.91491 0.93214 0.92818 0.88625 0.91573 0.90663 0.91196 0.92342 0.92373 0.92851 0.91597 0.91225 0.92264 0.79092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.99 13.29 55.43 0.74 -26.26 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 7 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 8 H 0.05 1.45 7.74 -52.48 -0.41 1.05 16 9 C 0.02 0.56 4.22 -27.88 -0.12 0.45 16 10 C 0.06 1.33 4.31 -3.83 -0.02 1.31 16 11 N -0.53 -9.90 4.17 -226.68 -0.95 -10.84 16 12 C 0.05 0.98 4.85 -3.83 -0.02 0.96 16 13 C -0.12 -1.78 6.09 -26.65 -0.16 -1.94 16 14 C -0.12 -1.66 6.00 -26.61 -0.16 -1.82 16 15 C -0.12 -1.64 4.29 -26.65 -0.11 -1.76 16 16 C 0.10 1.52 1.55 -67.72 -0.11 1.41 16 17 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 18 C -0.07 -1.04 1.61 -90.62 -0.15 -1.18 16 19 H 0.08 1.31 6.16 -51.93 -0.32 0.99 16 20 C -0.10 -1.43 4.42 -26.73 -0.12 -1.55 16 21 C -0.12 -1.48 5.92 -26.73 -0.16 -1.64 16 22 C -0.11 -1.14 5.78 -26.73 -0.15 -1.29 16 23 C -0.15 -1.46 5.63 -26.76 -0.15 -1.61 16 24 C 0.11 1.22 3.20 -26.76 -0.09 1.14 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 O -0.55 -5.46 8.29 -35.23 -0.29 -5.75 16 27 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.02 0.53 6.21 -51.93 -0.32 0.21 16 29 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 1.34 6.69 -51.93 -0.35 0.99 16 31 H 0.01 0.32 8.08 -51.93 -0.42 -0.10 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 1.91 5.81 -51.93 -0.30 1.61 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.10 1.25 5.03 -51.92 -0.26 0.99 16 39 H 0.07 0.99 6.28 -51.93 -0.33 0.67 16 40 H 0.07 1.23 7.81 -51.93 -0.41 0.83 16 41 H 0.07 0.98 5.85 -51.93 -0.30 0.68 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.67 7.68 -51.93 -0.40 0.27 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.36 2.21 9.08 45.57 0.41 2.63 16 LS Contribution 345.65 15.07 5.21 5.21 Total: -1.00 -30.02 345.65 -10.26 -40.28 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -8.03 Total: 1.65 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: -1.92 Total: -21.07 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: -0.21 Total: -37.10 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -0.29 Total: -5.75 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.02 -10.26 -40.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253089992.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.835 kcal (2) G-P(sol) polarization free energy of solvation -30.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds