Wall clock time and date at job start Tue Mar 31 2020 05:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.53120 * 109.52075 * 294.68273 * 10 9 7 12 12 C 1.53037 * 109.27874 * 182.43963 * 11 10 9 13 13 N 1.46845 * 109.52442 * 59.17687 * 12 11 10 14 14 C 1.46896 * 111.00223 * 174.16047 * 13 12 11 15 15 C 1.52995 * 109.47345 * 314.21301 * 14 13 12 16 16 C 1.53002 * 109.47473 * 179.97438 * 15 14 13 17 17 H 1.09000 * 109.47964 * 304.97349 * 16 15 14 18 18 C 1.53098 * 109.48085 * 184.94474 * 16 15 14 19 19 C 1.53177 * 109.15963 * 182.40942 * 18 16 15 20 20 C 1.53168 * 109.03794 * 56.97901 * 19 18 16 21 21 C 1.53086 * 109.16673 * 303.01664 * 20 19 18 22 22 O 1.42898 * 109.47964 * 64.99895 * 16 15 14 23 23 C 1.46844 * 111.20208 * 298.26223 * 13 12 11 24 24 C 1.53041 * 109.52628 * 61.73711 * 23 13 12 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 27 27 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 28 28 H 1.09003 * 109.52123 * 54.87505 * 10 9 7 29 29 H 1.08998 * 109.50255 * 302.37724 * 11 10 9 30 30 H 1.09001 * 109.50298 * 62.50125 * 11 10 9 31 31 H 1.09002 * 109.46395 * 299.16507 * 12 11 10 32 32 H 1.08991 * 109.46453 * 179.19693 * 12 11 10 33 33 H 1.09006 * 109.46912 * 74.21177 * 14 13 12 34 34 H 1.09004 * 109.47271 * 194.21459 * 14 13 12 35 35 H 1.09002 * 109.47420 * 300.00088 * 15 14 13 36 36 H 1.09003 * 109.47272 * 59.99628 * 15 14 13 37 37 H 1.09000 * 109.51984 * 302.31444 * 18 16 15 38 38 H 1.08994 * 109.52173 * 62.49848 * 18 16 15 39 39 H 1.09005 * 109.54245 * 297.10914 * 19 18 16 40 40 H 1.09005 * 109.61130 * 176.89287 * 19 18 16 41 41 H 1.09004 * 109.52577 * 183.11394 * 20 19 18 42 42 H 1.09005 * 109.52637 * 62.92249 * 20 19 18 43 43 H 1.09000 * 109.48186 * 297.63152 * 21 20 19 44 44 H 1.08998 * 109.48614 * 177.59352 * 21 20 19 45 45 H 1.09002 * 109.46321 * 301.72556 * 23 13 12 46 46 H 1.09004 * 109.46015 * 181.75124 * 23 13 12 47 47 H 1.08998 * 109.50738 * 180.88412 * 24 23 13 48 48 H 1.09003 * 109.50108 * 60.76177 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 3.0358 -3.6594 -1.3119 12 6 3.9851 -4.8596 -1.3321 13 7 3.2097 -6.1007 -1.2096 14 6 4.0736 -7.2786 -1.3641 15 6 4.9972 -7.0795 -2.5675 16 6 5.8975 -8.3062 -2.7280 17 1 6.4322 -8.4891 -1.7960 18 6 6.9044 -8.0566 -3.8540 19 6 7.7619 -9.3109 -4.0487 20 6 6.8451 -10.5023 -4.3421 21 6 5.8405 -10.6574 -3.1974 22 8 5.0975 -9.4456 -3.0500 23 6 2.4792 -6.1471 0.0634 24 6 1.4850 -4.9853 0.1253 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5571 0.8897 27 1 0.6240 -2.5568 -0.8903 28 1 2.9312 -3.5549 0.8397 29 1 2.3458 -3.7271 -2.1529 30 1 3.6129 -2.7378 -1.3870 31 1 4.6837 -4.7843 -0.4987 32 1 4.5392 -4.8687 -2.2706 33 1 4.6736 -7.4098 -0.4635 34 1 3.4569 -8.1634 -1.5219 35 1 4.3973 -6.9483 -3.4681 36 1 5.6139 -6.1948 -2.4098 37 1 6.3702 -7.8336 -4.7775 38 1 7.5446 -7.2149 -3.5901 39 1 8.3341 -9.5058 -3.1416 40 1 8.4444 -9.1612 -4.8853 41 1 7.4429 -11.4097 -4.4274 42 1 6.3096 -10.3287 -5.2756 43 1 6.3746 -10.8711 -2.2716 44 1 5.1581 -11.4773 -3.4212 45 1 3.1848 -6.0656 0.8902 46 1 1.9396 -7.0912 0.1382 47 1 0.9541 -5.0109 1.0769 48 1 0.7706 -5.0737 -0.6932 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259878178.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:35 Heat of formation + Delta-G solvation = -79.283164 kcal Electronic energy + Delta-G solvation = -22584.227518 eV Core-core repulsion = 19444.381338 eV Total energy + Delta-G solvation = -3139.846180 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.79575 -38.65607 -35.11811 -33.89304 -33.11209 -31.92299 -30.37283 -29.19729 -27.30766 -25.10343 -24.06054 -22.93307 -22.87299 -21.10556 -20.55642 -20.14094 -18.84586 -16.67101 -16.45208 -16.17440 -15.49785 -15.01617 -14.79300 -14.52431 -14.44028 -14.31145 -13.83274 -13.41370 -13.16650 -13.02322 -12.93079 -12.54584 -12.13360 -11.97943 -11.75475 -11.61108 -11.40371 -11.25003 -11.10243 -10.94293 -10.83602 -10.75910 -10.59350 -10.56210 -10.40655 -10.19355 -9.86345 -9.64076 -9.44642 -8.97326 -8.81725 -8.28462 -7.96197 -5.93449 -3.94646 3.34777 3.41138 3.44043 3.55449 4.08961 4.47744 4.50491 4.50657 4.55536 4.64973 4.89470 5.03302 5.11489 5.16314 5.23276 5.35151 5.41680 5.42860 5.44490 5.50221 5.52515 5.62676 5.65053 5.68529 5.71807 5.79159 5.83289 5.94356 5.96514 6.04549 6.13361 6.17754 6.22655 6.33330 6.52904 6.66617 6.75372 7.04206 7.06105 7.17913 7.26640 7.45533 7.49648 7.75629 7.93134 8.08019 8.51211 9.12037 9.68435 11.17945 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.032530 B = 0.002865 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.534707 B = 9771.651731 C =10420.039278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.274 1.274 6 H -0.287 1.287 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.028 3.972 10 C -0.081 4.081 11 C -0.100 4.100 12 C 0.049 3.951 13 N -0.537 5.537 14 C 0.060 3.940 15 C -0.115 4.115 16 C 0.093 3.907 17 H 0.055 0.945 18 C -0.151 4.151 19 C -0.123 4.123 20 C -0.157 4.157 21 C 0.060 3.940 22 O -0.374 6.374 23 C 0.060 3.940 24 C -0.112 4.112 25 H 0.259 0.741 26 H 0.013 0.987 27 H 0.017 0.983 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.024 0.976 32 H 0.071 0.929 33 H 0.024 0.976 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.047 0.953 44 H 0.092 0.908 45 H 0.026 0.974 46 H 0.064 0.936 47 H 0.059 0.941 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.113 -20.814 -6.368 25.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.199 1.199 6 H -0.213 1.213 7 C -0.551 4.551 8 H 0.073 0.927 9 C -0.009 4.009 10 C -0.100 4.100 11 C -0.138 4.138 12 C -0.078 4.078 13 N -0.261 5.261 14 C -0.068 4.068 15 C -0.153 4.153 16 C 0.034 3.966 17 H 0.073 0.927 18 C -0.189 4.189 19 C -0.160 4.160 20 C -0.195 4.195 21 C -0.017 4.017 22 O -0.293 6.293 23 C -0.067 4.067 24 C -0.150 4.150 25 H 0.069 0.931 26 H 0.032 0.968 27 H 0.035 0.965 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.043 0.957 32 H 0.089 0.911 33 H 0.042 0.958 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.065 0.935 44 H 0.110 0.890 45 H 0.044 0.956 46 H 0.083 0.917 47 H 0.078 0.922 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 13.412 -20.684 -6.766 25.564 hybrid contribution 1.400 0.911 0.706 1.813 sum 14.812 -19.774 -6.060 25.439 Atomic orbital electron populations 1.69970 1.06011 1.26397 1.51222 1.25026 0.94804 0.99112 0.95619 0.86654 0.79880 0.83826 0.77986 1.20822 1.19936 1.21315 1.21262 0.92900 0.91058 1.49912 0.92747 1.19120 0.93646 0.91060 0.97097 1.21231 0.97865 0.94765 0.96129 1.21549 0.97876 0.95512 0.98828 1.22318 0.95512 0.90259 0.99752 1.62013 1.27926 1.01747 1.34458 1.22045 0.94505 0.94301 0.95907 1.21805 0.97867 0.95457 1.00154 1.22132 0.91729 0.86612 0.96077 0.92710 1.22211 0.98246 0.98171 1.00236 1.21586 0.97745 0.94831 1.01872 1.22195 0.98375 0.98819 1.00082 1.22535 0.94700 0.87541 0.96886 1.87989 1.33990 1.16261 1.91097 1.22085 0.96330 0.99344 0.88968 1.21691 0.97569 0.94288 1.01417 0.93131 0.96823 0.96494 0.93170 0.91881 0.91046 0.95737 0.91111 0.95760 0.90322 0.90035 0.90115 0.90811 0.90839 0.91975 0.91526 0.91117 0.91003 0.93475 0.88999 0.95587 0.91719 0.92237 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.28 13.29 55.43 0.74 -26.55 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.51 -14.49 8.45 -34.44 -0.29 -14.78 16 8 H 0.05 1.49 7.08 -52.49 -0.37 1.12 16 9 C 0.03 0.72 4.45 -27.89 -0.12 0.60 16 10 C -0.08 -1.70 2.20 -90.49 -0.20 -1.90 16 11 C -0.10 -1.93 5.15 -26.65 -0.14 -2.06 16 12 C 0.05 0.78 4.85 -3.84 -0.02 0.76 16 13 N -0.54 -8.25 4.81 -234.67 -1.13 -9.37 16 14 C 0.06 0.77 5.17 -3.83 -0.02 0.75 16 15 C -0.12 -1.29 4.17 -26.73 -0.11 -1.40 16 16 C 0.09 0.91 2.64 -26.68 -0.07 0.84 16 17 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 18 C -0.15 -1.25 5.42 -26.59 -0.14 -1.39 16 19 C -0.12 -0.86 6.03 -26.55 -0.16 -1.02 16 20 C -0.16 -1.08 6.13 -26.60 -0.16 -1.24 16 21 C 0.06 0.48 6.84 37.20 0.25 0.73 16 22 O -0.37 -4.08 9.94 -35.23 -0.35 -4.43 16 23 C 0.06 0.94 5.42 -3.83 -0.02 0.92 16 24 C -0.11 -2.03 5.38 -26.65 -0.14 -2.17 16 25 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.01 0.38 8.14 -51.92 -0.42 -0.05 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.07 1.45 7.05 -51.93 -0.37 1.09 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 1.00 5.81 -51.93 -0.30 0.70 16 33 H 0.02 0.31 8.08 -51.93 -0.42 -0.11 16 34 H 0.08 1.04 7.82 -51.93 -0.41 0.64 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.08 0.86 6.21 -51.93 -0.32 0.54 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16 47 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 361.71 15.07 5.45 5.45 Total: -1.00 -30.43 361.71 -11.11 -41.54 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -9.35 Total: -3.59 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: -1.45 Total: -19.88 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: -0.39 Total: -35.92 kcal Atomic # 8 Polarization: -4.08 SS G_CDS: -0.35 Total: -4.43 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.43 -11.11 -41.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259878178.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.743 kcal (2) G-P(sol) polarization free energy of solvation -30.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds