Wall clock time and date at job start Tue Mar 31 2020 05:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99807 * 2 1 4 4 H 1.48503 * 109.46957 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46925 * 299.99532 * 3 2 1 6 6 H 1.48492 * 109.47401 * 59.99535 * 3 2 1 7 7 C 1.37871 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00377 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00295 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47396 * 179.97438 * 9 7 2 11 11 C 1.53121 * 109.52622 * 184.99902 * 10 9 7 12 12 C 1.53036 * 109.27999 * 182.37789 * 11 10 9 13 13 N 1.46849 * 109.52183 * 59.18332 * 12 11 10 14 14 C 1.46901 * 110.99649 * 174.16073 * 13 12 11 15 15 C 1.53000 * 109.46769 * 169.99929 * 14 13 12 16 16 C 1.53001 * 109.46886 * 180.02562 * 15 14 13 17 17 H 1.08994 * 109.48414 * 54.99250 * 16 15 14 18 18 C 1.53088 * 109.48195 * 175.02310 * 16 15 14 19 19 C 1.53181 * 109.16586 * 177.57573 * 18 16 15 20 20 C 1.53172 * 109.04383 * 303.03517 * 19 18 16 21 21 C 1.53096 * 109.16210 * 56.97373 * 20 19 18 22 22 O 1.42895 * 109.41350 * 302.38817 * 21 20 19 23 23 C 1.46848 * 111.19595 * 298.25529 * 13 12 11 24 24 C 1.53036 * 109.52325 * 61.74468 * 23 13 12 25 25 H 0.97001 * 120.00528 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47095 * 59.99571 * 9 7 2 27 27 H 1.09004 * 109.47169 * 300.00095 * 9 7 2 28 28 H 1.09001 * 109.52691 * 305.12736 * 10 9 7 29 29 H 1.09001 * 109.50276 * 62.43395 * 11 10 9 30 30 H 1.09001 * 109.53434 * 302.34251 * 11 10 9 31 31 H 1.09001 * 109.46105 * 299.16399 * 12 11 10 32 32 H 1.09006 * 109.45028 * 179.19053 * 12 11 10 33 33 H 1.09002 * 109.47401 * 49.99636 * 14 13 12 34 34 H 1.09001 * 109.46874 * 289.99649 * 14 13 12 35 35 H 1.09001 * 109.47194 * 299.99524 * 15 14 13 36 36 H 1.08992 * 109.47399 * 59.99697 * 15 14 13 37 37 H 1.09001 * 109.52021 * 297.49230 * 18 16 15 38 38 H 1.09003 * 109.52482 * 57.68271 * 18 16 15 39 39 H 1.09004 * 109.54452 * 183.16285 * 19 18 16 40 40 H 1.08999 * 109.60339 * 62.94281 * 19 18 16 41 41 H 1.08998 * 109.52649 * 297.06601 * 20 19 18 42 42 H 1.09002 * 109.52097 * 176.87541 * 20 19 18 43 43 H 1.09009 * 109.47830 * 182.40787 * 21 20 19 44 44 H 1.09000 * 109.48840 * 62.38191 * 21 20 19 45 45 H 1.08997 * 109.46035 * 181.75979 * 23 13 12 46 46 H 1.09006 * 109.46342 * 301.72876 * 23 13 12 47 47 H 1.09005 * 109.50033 * 180.87700 * 24 23 13 48 48 H 1.09000 * 109.53750 * 60.78108 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4851 -4.9853 -0.1252 12 6 2.4796 -6.1470 -0.0650 13 7 3.2111 -6.1012 1.2075 14 6 4.0754 -7.2792 1.3604 15 6 5.0001 -7.0805 2.5631 16 6 5.9007 -8.3071 2.7220 17 1 6.4341 -8.4898 1.7892 18 6 6.9091 -8.0579 3.8465 19 6 7.7668 -9.3122 4.0400 20 6 6.8504 -10.5038 4.3343 21 6 5.8444 -10.6585 3.1907 22 8 5.1012 -9.4468 3.0447 23 6 3.9865 -4.8601 1.3298 24 6 3.0371 -3.6600 1.3111 25 1 -0.4851 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 2.9313 -3.5548 -0.8397 29 1 0.9533 -5.0105 -1.0763 30 1 0.7710 -5.0746 0.6934 31 1 3.1844 -6.0650 -0.8924 32 1 1.9398 -7.0911 -0.1398 33 1 4.6745 -7.4098 0.4592 34 1 3.4589 -8.1641 1.5183 35 1 5.6166 -6.1956 2.4052 36 1 4.4011 -6.9499 3.4643 37 1 7.5490 -7.2161 3.5819 38 1 6.3762 -7.8351 4.7710 39 1 8.4493 -9.1618 4.8765 40 1 8.3390 -9.5075 3.1331 41 1 6.3162 -10.3305 5.2685 42 1 7.4485 -11.4111 4.4185 43 1 5.1623 -11.4786 3.4151 44 1 6.3772 -10.8721 2.2641 45 1 4.5415 -4.8696 2.2678 46 1 4.6843 -4.7841 0.4958 47 1 3.6142 -2.7383 1.3863 48 1 2.3478 -3.7274 2.1528 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259878182.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:37 Heat of formation + Delta-G solvation = -79.317455 kcal Electronic energy + Delta-G solvation = -22583.829157 eV Core-core repulsion = 19443.981490 eV Total energy + Delta-G solvation = -3139.847667 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.79575 -38.65586 -35.11807 -33.89322 -33.11332 -31.92414 -30.37329 -29.19758 -27.30870 -25.10425 -24.06173 -22.93395 -22.87473 -21.10682 -20.55607 -20.14219 -18.84662 -16.67161 -16.45221 -16.17714 -15.49828 -15.01651 -14.79363 -14.52427 -14.43889 -14.31085 -13.83250 -13.41395 -13.16626 -13.02511 -12.93138 -12.54625 -12.13319 -11.98431 -11.75534 -11.61211 -11.40512 -11.25118 -11.10932 -10.94991 -10.83643 -10.73561 -10.59344 -10.57141 -10.40930 -10.19566 -9.85603 -9.64041 -9.44877 -8.97350 -8.80947 -8.28954 -7.96300 -5.93631 -3.94818 3.33816 3.41361 3.44951 3.55437 4.08947 4.47730 4.50476 4.50644 4.55461 4.64961 4.89466 5.03279 5.11465 5.16285 5.23253 5.35116 5.41611 5.42828 5.44438 5.50185 5.52496 5.62628 5.65006 5.68474 5.71775 5.79108 5.83265 5.94353 5.96479 6.04441 6.13341 6.17707 6.22593 6.33257 6.52921 6.66506 6.75292 7.04194 7.06022 7.17843 7.26555 7.45443 7.49541 7.75799 7.93015 8.07892 8.51126 9.12109 9.68411 11.17800 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.032539 B = 0.002864 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.310114 B = 9772.788745 C =10421.207962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.512 4.512 8 H 0.055 0.945 9 C 0.027 3.973 10 C -0.081 4.081 11 C -0.112 4.112 12 C 0.060 3.940 13 N -0.536 5.536 14 C 0.060 3.940 15 C -0.115 4.115 16 C 0.093 3.907 17 H 0.055 0.945 18 C -0.151 4.151 19 C -0.123 4.123 20 C -0.157 4.157 21 C 0.060 3.940 22 O -0.374 6.374 23 C 0.049 3.951 24 C -0.100 4.100 25 H 0.258 0.742 26 H 0.014 0.986 27 H 0.017 0.983 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.026 0.974 32 H 0.064 0.936 33 H 0.024 0.976 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.092 0.908 44 H 0.047 0.953 45 H 0.071 0.929 46 H 0.024 0.976 47 H 0.071 0.929 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.133 -20.829 6.346 25.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.550 4.550 8 H 0.073 0.927 9 C -0.010 4.010 10 C -0.100 4.100 11 C -0.150 4.150 12 C -0.067 4.067 13 N -0.261 5.261 14 C -0.068 4.068 15 C -0.153 4.153 16 C 0.034 3.966 17 H 0.073 0.927 18 C -0.189 4.189 19 C -0.160 4.160 20 C -0.195 4.195 21 C -0.017 4.017 22 O -0.293 6.293 23 C -0.078 4.078 24 C -0.138 4.138 25 H 0.068 0.932 26 H 0.032 0.968 27 H 0.035 0.965 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.044 0.956 32 H 0.083 0.917 33 H 0.042 0.958 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.110 0.890 44 H 0.065 0.935 45 H 0.089 0.911 46 H 0.043 0.957 47 H 0.089 0.911 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.438 -20.702 6.739 25.584 hybrid contribution 1.386 0.915 -0.695 1.800 sum 14.824 -19.787 6.043 25.452 Atomic orbital electron populations 1.69977 1.06009 1.26291 1.51329 1.25024 0.94801 0.99123 0.95632 0.86602 0.80124 0.84163 0.77500 1.19819 1.21149 1.21103 1.21298 0.92939 0.91043 1.49761 0.92692 1.19125 0.93654 0.91079 0.97106 1.21229 0.97852 0.94760 0.96138 1.21689 0.97561 0.94290 1.01424 1.22086 0.96323 0.99346 0.88979 1.62022 1.27866 1.01748 1.34503 1.22046 0.94501 0.94303 0.95912 1.21804 0.97857 0.95457 1.00162 1.22131 0.91729 0.86607 0.96083 0.92709 1.22212 0.98236 0.98171 1.00245 1.21587 0.97748 0.94829 1.01873 1.22196 0.98371 0.98817 1.00087 1.22536 0.94691 0.87543 0.96894 1.87988 1.34010 1.16250 1.91089 1.22319 0.95513 0.90254 0.99753 1.21549 0.97872 0.95516 0.98836 0.93185 0.96807 0.96493 0.93175 0.92243 0.91601 0.95582 0.91719 0.95757 0.90322 0.90115 0.90033 0.90837 0.90809 0.91535 0.91966 0.91004 0.91118 0.89001 0.93475 0.91108 0.95732 0.91054 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.51 -14.46 8.45 -34.44 -0.29 -14.75 16 8 H 0.05 1.51 7.08 -52.49 -0.37 1.14 16 9 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 10 C -0.08 -1.70 2.20 -90.50 -0.20 -1.90 16 11 C -0.11 -2.03 5.38 -26.65 -0.14 -2.17 16 12 C 0.06 0.94 5.42 -3.83 -0.02 0.92 16 13 N -0.54 -8.24 4.81 -234.66 -1.13 -9.37 16 14 C 0.06 0.77 5.17 -3.82 -0.02 0.75 16 15 C -0.12 -1.29 4.17 -26.73 -0.11 -1.40 16 16 C 0.09 0.91 2.64 -26.69 -0.07 0.84 16 17 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 18 C -0.15 -1.25 5.42 -26.59 -0.14 -1.39 16 19 C -0.12 -0.86 6.03 -26.55 -0.16 -1.02 16 20 C -0.16 -1.08 6.14 -26.59 -0.16 -1.24 16 21 C 0.06 0.48 6.84 37.21 0.25 0.73 16 22 O -0.37 -4.08 9.94 -35.23 -0.35 -4.43 16 23 C 0.05 0.78 4.85 -3.83 -0.02 0.76 16 24 C -0.10 -1.93 5.15 -26.65 -0.14 -2.06 16 25 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16 33 H 0.02 0.31 8.08 -51.93 -0.42 -0.11 16 34 H 0.08 1.04 7.82 -51.93 -0.41 0.64 16 35 H 0.08 0.86 6.21 -51.93 -0.32 0.54 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.09 0.63 8.14 -51.92 -0.42 0.20 16 44 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 1.00 5.81 -51.93 -0.30 0.70 16 46 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.07 1.45 7.06 -51.93 -0.37 1.08 16 48 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 361.71 15.07 5.45 5.45 Total: -1.00 -30.45 361.71 -11.11 -41.56 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -9.35 Total: -3.63 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -1.45 Total: -19.86 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: -0.39 Total: -35.91 kcal Atomic # 8 Polarization: -4.08 SS G_CDS: -0.35 Total: -4.43 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.45 -11.11 -41.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259878182.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.753 kcal (2) G-P(sol) polarization free energy of solvation -30.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds