Wall clock time and date at job start Tue Mar 31 2020 05:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99923 * 2 1 4 4 H 1.48494 * 109.47388 * 269.99644 * 3 2 1 5 5 H 1.48502 * 109.47303 * 29.99859 * 3 2 1 6 6 H 1.48503 * 109.47072 * 149.99747 * 3 2 1 7 7 C 1.37872 * 119.99952 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99800 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00165 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46970 * 179.97438 * 9 7 2 11 11 C 1.53125 * 109.52222 * 174.99986 * 10 9 7 12 12 C 1.53033 * 109.28287 * 177.61979 * 11 10 9 13 13 N 1.46851 * 109.52231 * 300.82460 * 12 11 10 14 14 C 1.46898 * 110.99682 * 185.83477 * 13 12 11 15 15 C 1.53006 * 109.47006 * 170.00115 * 14 13 12 16 16 C 1.52997 * 109.47127 * 180.02562 * 15 14 13 17 17 C 1.53183 * 109.54463 * 294.82119 * 16 15 14 18 18 C 1.53104 * 109.15819 * 183.24416 * 17 16 15 19 19 O 1.42901 * 109.48575 * 57.47042 * 18 17 16 20 20 C 1.42901 * 114.10088 * 298.88829 * 19 18 17 21 21 C 1.53091 * 109.41483 * 61.15765 * 20 19 18 22 22 C 1.46846 * 111.19864 * 61.73920 * 13 12 11 23 23 C 1.53033 * 109.52460 * 298.25500 * 22 13 12 24 24 H 0.96997 * 120.00000 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47033 * 59.99848 * 9 7 2 26 26 H 1.09000 * 109.47043 * 299.99795 * 9 7 2 27 27 H 1.08994 * 109.52566 * 54.87274 * 10 9 7 28 28 H 1.09005 * 109.50073 * 57.67955 * 11 10 9 29 29 H 1.08991 * 109.50379 * 297.56469 * 11 10 9 30 30 H 1.08989 * 109.46624 * 180.80484 * 12 11 10 31 31 H 1.09002 * 109.45127 * 60.82884 * 12 11 10 32 32 H 1.09001 * 109.47392 * 50.00413 * 14 13 12 33 33 H 1.09001 * 109.47520 * 290.00136 * 14 13 12 34 34 H 1.09001 * 109.47002 * 299.99782 * 15 14 13 35 35 H 1.08993 * 109.46955 * 60.00219 * 15 14 13 36 36 H 1.09004 * 109.54819 * 54.99771 * 16 15 14 37 37 H 1.09002 * 109.51705 * 303.06143 * 17 16 15 38 38 H 1.08998 * 109.52061 * 63.24372 * 17 16 15 39 39 H 1.09003 * 109.40145 * 297.49159 * 18 17 16 40 40 H 1.08994 * 109.48705 * 177.51082 * 18 17 16 41 41 H 1.09004 * 109.48020 * 301.17690 * 20 19 18 42 42 H 1.08995 * 109.48931 * 181.14818 * 20 19 18 43 43 H 1.08999 * 109.52289 * 182.47982 * 21 20 19 44 44 H 1.09003 * 109.56775 * 62.33038 * 21 20 19 45 45 H 1.09002 * 109.46555 * 58.27646 * 22 13 12 46 46 H 1.09001 * 109.46296 * 178.24247 * 22 13 12 47 47 H 1.08997 * 109.50475 * 299.23909 * 23 22 13 48 48 H 1.09002 * 109.50799 * 179.12007 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4851 -4.9853 0.1263 12 6 2.4794 -6.1470 0.0660 13 7 3.2110 -6.1012 -1.2064 14 6 4.0753 -7.2791 -1.3593 15 6 4.6255 -7.3262 -2.7862 16 6 5.5251 -8.5535 -2.9457 17 6 6.7564 -8.4066 -2.0464 18 6 7.6893 -9.5993 -2.2729 19 8 8.0495 -9.6671 -3.6541 20 6 6.9418 -9.8529 -4.5376 21 6 5.9800 -8.6694 -4.4037 22 6 3.9864 -4.8602 -1.3286 23 6 3.0371 -3.6600 -1.3101 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.9313 -3.5548 0.8407 28 1 0.7714 -5.0742 -0.6928 29 1 0.9533 -5.0104 1.0773 30 1 1.9399 -7.0910 0.1410 31 1 3.1842 -6.0648 0.8934 32 1 3.4971 -8.1820 -1.1629 33 1 4.9029 -7.2168 -0.6527 34 1 3.7979 -7.3887 -3.4928 35 1 5.2037 -6.4235 -2.9826 36 1 4.9726 -9.4498 -2.6638 37 1 7.2805 -7.4835 -2.2944 38 1 6.4439 -8.3798 -1.0025 39 1 7.1786 -10.5182 -1.9849 40 1 8.5880 -9.4780 -1.6683 41 1 6.4214 -10.7752 -4.2792 42 1 7.3020 -9.9142 -5.5645 43 1 5.1129 -8.8304 -5.0442 44 1 6.4871 -7.7514 -4.7012 45 1 4.6843 -4.7842 -0.4947 46 1 4.5415 -4.8696 -2.2667 47 1 2.3479 -3.7281 -2.1518 48 1 3.6141 -2.7383 -1.3851 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260179894.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:58 Heat of formation + Delta-G solvation = -82.986799 kcal Electronic energy + Delta-G solvation = -22576.640371 eV Core-core repulsion = 19436.633589 eV Total energy + Delta-G solvation = -3140.006782 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.82239 -38.70556 -35.86466 -34.07490 -32.27380 -31.40301 -30.43879 -29.67420 -27.43728 -24.95073 -23.87402 -23.31385 -22.78986 -21.33621 -20.49778 -20.11007 -18.88727 -16.57910 -16.30784 -16.21158 -15.55934 -15.39600 -14.92224 -14.77602 -14.46480 -14.15073 -13.80009 -13.57114 -13.15160 -13.02622 -12.80920 -12.54709 -12.10727 -12.00436 -11.81616 -11.63621 -11.53354 -11.39771 -11.05722 -10.92194 -10.75899 -10.62703 -10.60699 -10.51448 -10.44384 -10.22340 -9.90537 -9.75289 -9.49329 -9.00911 -8.84862 -8.30715 -8.04248 -5.95531 -3.96900 3.33591 3.39980 3.42924 3.58773 4.02944 4.43053 4.48844 4.49181 4.64068 4.71364 4.89803 4.99752 5.11369 5.19009 5.26087 5.33538 5.38198 5.39770 5.44241 5.44925 5.53529 5.57934 5.63344 5.70062 5.76482 5.78117 5.84233 5.88670 5.92633 6.02138 6.13072 6.16265 6.22510 6.30834 6.48557 6.61366 6.70754 6.89681 7.01349 7.13796 7.22804 7.39276 7.43096 7.72956 7.89897 8.05534 8.48731 9.09749 9.66457 11.15864 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.029680 B = 0.002854 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.167232 B = 9807.728077 C =10267.175759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.028 3.972 10 C -0.081 4.081 11 C -0.112 4.112 12 C 0.060 3.940 13 N -0.537 5.537 14 C 0.055 3.945 15 C -0.110 4.110 16 C -0.088 4.088 17 C -0.153 4.153 18 C 0.060 3.940 19 O -0.386 6.386 20 C 0.060 3.940 21 C -0.151 4.151 22 C 0.054 3.946 23 C -0.100 4.100 24 H 0.259 0.741 25 H 0.016 0.984 26 H 0.014 0.986 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.026 0.974 32 H 0.067 0.933 33 H 0.030 0.970 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.048 0.952 40 H 0.092 0.908 41 H 0.048 0.952 42 H 0.092 0.908 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.025 0.975 46 H 0.067 0.933 47 H 0.062 0.938 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.887 -20.600 -5.673 24.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.073 0.927 9 C -0.009 4.009 10 C -0.100 4.100 11 C -0.150 4.150 12 C -0.068 4.068 13 N -0.262 5.262 14 C -0.073 4.073 15 C -0.148 4.148 16 C -0.107 4.107 17 C -0.191 4.191 18 C -0.016 4.016 19 O -0.304 6.304 20 C -0.016 4.016 21 C -0.189 4.189 22 C -0.073 4.073 23 C -0.138 4.138 24 H 0.069 0.931 25 H 0.035 0.965 26 H 0.032 0.968 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.044 0.956 32 H 0.086 0.914 33 H 0.048 0.952 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.066 0.934 40 H 0.110 0.890 41 H 0.067 0.933 42 H 0.110 0.890 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.043 0.957 46 H 0.085 0.915 47 H 0.081 0.919 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.576 -20.467 -6.101 24.292 hybrid contribution 0.672 1.011 0.815 1.462 sum 12.248 -19.455 -5.285 23.589 Atomic orbital electron populations 1.69966 1.06021 1.26432 1.51197 1.25019 0.94803 0.99127 0.95575 0.86655 0.79862 0.83788 0.78057 1.20716 1.21316 1.19968 1.21259 0.92908 0.91053 1.49977 0.92741 1.19115 0.93627 0.91063 0.97088 1.21230 0.97862 0.94757 0.96128 1.21689 0.97545 0.94308 1.01424 1.22088 0.96259 0.99305 0.89119 1.61941 1.27982 1.01836 1.34437 1.22113 0.95049 0.93821 0.96282 1.21631 0.98806 0.97213 0.97115 1.21183 0.95698 0.99077 0.94737 1.22314 0.96592 0.99627 1.00554 1.22588 0.99225 0.97087 0.82740 1.87926 1.32285 1.93790 1.16433 1.22583 0.88074 0.96705 0.94273 1.22239 0.99811 0.99833 0.96974 1.22241 0.95304 0.90069 0.99705 1.21545 0.97852 0.95533 0.98826 0.93112 0.96533 0.96794 0.93151 0.91629 0.92217 0.91800 0.95582 0.91423 0.95231 0.90944 0.91620 0.91161 0.90965 0.90689 0.93363 0.89032 0.93339 0.89006 0.90726 0.90913 0.95686 0.91461 0.91908 0.91015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.16 13.29 55.43 0.74 -26.43 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.76 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 7 C -0.51 -14.44 8.45 -34.44 -0.29 -14.73 16 8 H 0.05 1.49 7.08 -52.49 -0.37 1.12 16 9 C 0.03 0.73 4.45 -27.88 -0.12 0.60 16 10 C -0.08 -1.68 2.20 -90.49 -0.20 -1.88 16 11 C -0.11 -1.97 5.38 -26.65 -0.14 -2.12 16 12 C 0.06 0.89 5.46 -3.83 -0.02 0.87 16 13 N -0.54 -7.81 4.66 -234.67 -1.09 -8.90 16 14 C 0.06 0.63 4.72 -3.82 -0.02 0.62 16 15 C -0.11 -1.12 4.62 -26.73 -0.12 -1.24 16 16 C -0.09 -0.74 2.27 -90.44 -0.21 -0.95 16 17 C -0.15 -1.28 5.10 -26.58 -0.14 -1.42 16 18 C 0.06 0.49 6.84 37.21 0.25 0.74 16 19 O -0.39 -3.83 10.77 -35.23 -0.38 -4.21 16 20 C 0.06 0.47 6.84 37.20 0.25 0.72 16 21 C -0.15 -1.20 5.42 -26.60 -0.14 -1.34 16 22 C 0.05 0.85 5.29 -3.84 -0.02 0.83 16 23 C -0.10 -1.90 5.15 -26.65 -0.14 -2.04 16 24 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 0.84 8.01 -51.94 -0.42 0.42 16 31 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.72 7.99 -51.93 -0.41 0.31 16 33 H 0.03 0.34 6.63 -51.93 -0.34 -0.01 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.72 6.43 -51.93 -0.33 0.39 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.60 6.74 -51.93 -0.35 0.25 16 39 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 0.96 6.21 -51.93 -0.32 0.64 16 47 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 48 H 0.07 1.45 7.06 -51.93 -0.37 1.08 16 LS Contribution 360.11 15.07 5.43 5.43 Total: -1.00 -30.27 360.11 -10.72 -40.99 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -9.24 Total: -3.82 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: -1.15 Total: -19.82 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: -0.36 Total: -35.33 kcal Atomic # 8 Polarization: -3.83 SS G_CDS: -0.38 Total: -4.21 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.27 -10.72 -40.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260179894.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.995 kcal (2) G-P(sol) polarization free energy of solvation -30.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds