Wall clock time and date at job start Tue Mar 31 2020 05:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99923 * 2 1 4 4 H 1.48494 * 109.47388 * 269.99644 * 3 2 1 5 5 H 1.48502 * 109.47303 * 29.99859 * 3 2 1 6 6 H 1.48503 * 109.47072 * 149.99747 * 3 2 1 7 7 C 1.37872 * 119.99952 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99800 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00165 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46970 * 179.97438 * 9 7 2 11 11 C 1.53125 * 109.52222 * 174.99986 * 10 9 7 12 12 C 1.53033 * 109.28287 * 177.61979 * 11 10 9 13 13 N 1.46851 * 109.52231 * 300.82460 * 12 11 10 14 14 C 1.46898 * 110.99682 * 185.83477 * 13 12 11 15 15 C 1.53006 * 109.47006 * 170.00115 * 14 13 12 16 16 C 1.52997 * 109.47127 * 180.02562 * 15 14 13 17 17 C 1.53183 * 109.54463 * 294.82119 * 16 15 14 18 18 C 1.53104 * 109.15819 * 183.24416 * 17 16 15 19 19 O 1.42901 * 109.48575 * 57.47042 * 18 17 16 20 20 C 1.42901 * 114.10088 * 298.88829 * 19 18 17 21 21 C 1.53091 * 109.41483 * 61.15765 * 20 19 18 22 22 C 1.46846 * 111.19864 * 61.73920 * 13 12 11 23 23 C 1.53033 * 109.52460 * 298.25500 * 22 13 12 24 24 H 0.96997 * 120.00000 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47033 * 59.99848 * 9 7 2 26 26 H 1.09000 * 109.47043 * 299.99795 * 9 7 2 27 27 H 1.08994 * 109.52566 * 54.87274 * 10 9 7 28 28 H 1.09005 * 109.50073 * 57.67955 * 11 10 9 29 29 H 1.08991 * 109.50379 * 297.56469 * 11 10 9 30 30 H 1.08989 * 109.46624 * 180.80484 * 12 11 10 31 31 H 1.09002 * 109.45127 * 60.82884 * 12 11 10 32 32 H 1.09001 * 109.47392 * 50.00413 * 14 13 12 33 33 H 1.09001 * 109.47520 * 290.00136 * 14 13 12 34 34 H 1.09001 * 109.47002 * 299.99782 * 15 14 13 35 35 H 1.08993 * 109.46955 * 60.00219 * 15 14 13 36 36 H 1.09004 * 109.54819 * 54.99771 * 16 15 14 37 37 H 1.09002 * 109.51705 * 303.06143 * 17 16 15 38 38 H 1.08998 * 109.52061 * 63.24372 * 17 16 15 39 39 H 1.09003 * 109.40145 * 297.49159 * 18 17 16 40 40 H 1.08994 * 109.48705 * 177.51082 * 18 17 16 41 41 H 1.09004 * 109.48020 * 301.17690 * 20 19 18 42 42 H 1.08995 * 109.48931 * 181.14818 * 20 19 18 43 43 H 1.08999 * 109.52289 * 182.47982 * 21 20 19 44 44 H 1.09003 * 109.56775 * 62.33038 * 21 20 19 45 45 H 1.09002 * 109.46555 * 58.27646 * 22 13 12 46 46 H 1.09001 * 109.46296 * 178.24247 * 22 13 12 47 47 H 1.08997 * 109.50475 * 299.23909 * 23 22 13 48 48 H 1.09002 * 109.50799 * 179.12007 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4851 -4.9853 0.1263 12 6 2.4794 -6.1470 0.0660 13 7 3.2110 -6.1012 -1.2064 14 6 4.0753 -7.2791 -1.3593 15 6 4.6255 -7.3262 -2.7862 16 6 5.5251 -8.5535 -2.9457 17 6 6.7564 -8.4066 -2.0464 18 6 7.6893 -9.5993 -2.2729 19 8 8.0495 -9.6671 -3.6541 20 6 6.9418 -9.8529 -4.5376 21 6 5.9800 -8.6694 -4.4037 22 6 3.9864 -4.8602 -1.3286 23 6 3.0371 -3.6600 -1.3101 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.9313 -3.5548 0.8407 28 1 0.7714 -5.0742 -0.6928 29 1 0.9533 -5.0104 1.0773 30 1 1.9399 -7.0910 0.1410 31 1 3.1842 -6.0648 0.8934 32 1 3.4971 -8.1820 -1.1629 33 1 4.9029 -7.2168 -0.6527 34 1 3.7979 -7.3887 -3.4928 35 1 5.2037 -6.4235 -2.9826 36 1 4.9726 -9.4498 -2.6638 37 1 7.2805 -7.4835 -2.2944 38 1 6.4439 -8.3798 -1.0025 39 1 7.1786 -10.5182 -1.9849 40 1 8.5880 -9.4780 -1.6683 41 1 6.4214 -10.7752 -4.2792 42 1 7.3020 -9.9142 -5.5645 43 1 5.1129 -8.8304 -5.0442 44 1 6.4871 -7.7514 -4.7012 45 1 4.6843 -4.7842 -0.4947 46 1 4.5415 -4.8696 -2.2667 47 1 2.3479 -3.7281 -2.1518 48 1 3.6141 -2.7383 -1.3851 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260179894.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:57 Heat of formation + Delta-G solvation = -100.438778 kcal Electronic energy + Delta-G solvation = -22577.397145 eV Core-core repulsion = 19436.633589 eV Total energy + Delta-G solvation = -3140.763556 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.58155 -39.89155 -36.95468 -35.50418 -34.10099 -32.01931 -31.78379 -30.90407 -28.99847 -26.27962 -24.85017 -24.35909 -24.11969 -22.60486 -21.69690 -20.83201 -20.44339 -18.43183 -17.32768 -16.94775 -16.68383 -16.43352 -16.20609 -15.83150 -15.56084 -15.18153 -15.07344 -14.84064 -14.55279 -14.21319 -14.06205 -13.78505 -13.27359 -13.24666 -13.08059 -12.91531 -12.70411 -12.54268 -12.53728 -12.20818 -12.14256 -12.03821 -11.95100 -11.75861 -11.56914 -11.29428 -11.16854 -11.14557 -10.82444 -10.69794 -10.52185 -10.39643 -9.17762 -8.17809 -6.27532 1.38906 1.40085 1.50853 2.41227 2.95295 3.02747 3.15223 3.75873 3.78161 3.94021 4.02839 4.06317 4.09405 4.11689 4.26342 4.30685 4.40759 4.48234 4.52253 4.56622 4.64769 4.65532 4.69724 4.76588 4.81951 4.82811 4.83400 4.91945 4.95844 4.99980 5.06889 5.13493 5.17490 5.20797 5.21964 5.34808 5.39308 5.42774 5.45352 5.51346 5.57509 5.80916 5.89150 6.20122 6.27069 6.30566 6.32196 6.88635 7.40836 8.94202 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.029680 B = 0.002854 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.167232 B = 9807.728077 C =10267.175759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.961 3.039 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.530 4.530 8 H 0.059 0.941 9 C 0.034 3.966 10 C -0.075 4.075 11 C -0.107 4.107 12 C 0.067 3.933 13 N -0.548 5.548 14 C 0.058 3.942 15 C -0.103 4.103 16 C -0.083 4.083 17 C -0.150 4.150 18 C 0.058 3.942 19 O -0.408 6.408 20 C 0.057 3.943 21 C -0.149 4.149 22 C 0.066 3.934 23 C -0.095 4.095 24 H 0.262 0.738 25 H -0.013 1.013 26 H -0.014 1.014 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.031 0.969 32 H 0.082 0.918 33 H 0.036 0.964 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.080 0.920 37 H 0.058 0.942 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.098 0.902 41 H 0.060 0.940 42 H 0.101 0.899 43 H 0.083 0.917 44 H 0.060 0.940 45 H 0.027 0.973 46 H 0.082 0.918 47 H 0.048 0.952 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.453 -21.983 -5.765 26.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.200 4.200 3 Si 0.785 3.215 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.568 4.568 8 H 0.078 0.922 9 C -0.003 4.003 10 C -0.093 4.093 11 C -0.145 4.145 12 C -0.061 4.061 13 N -0.273 5.273 14 C -0.069 4.069 15 C -0.141 4.141 16 C -0.102 4.102 17 C -0.188 4.188 18 C -0.019 4.019 19 O -0.328 6.328 20 C -0.019 4.019 21 C -0.187 4.187 22 C -0.062 4.062 23 C -0.133 4.133 24 H 0.071 0.929 25 H 0.005 0.995 26 H 0.004 0.996 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.049 0.951 32 H 0.100 0.900 33 H 0.054 0.946 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.116 0.884 41 H 0.078 0.922 42 H 0.119 0.881 43 H 0.102 0.898 44 H 0.079 0.921 45 H 0.046 0.954 46 H 0.101 0.899 47 H 0.066 0.934 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 13.156 -21.869 -6.195 26.263 hybrid contribution 0.135 1.427 0.835 1.659 sum 13.290 -20.443 -5.360 24.965 Atomic orbital electron populations 1.70105 1.07796 1.27565 1.52193 1.25966 0.95714 1.03248 0.95080 0.85511 0.78714 0.78774 0.78457 1.19827 1.20874 1.18761 1.21649 0.93343 0.92158 1.49604 0.92240 1.19005 0.94002 0.93077 0.94223 1.21082 0.96883 0.94400 0.96954 1.21602 0.97888 0.93935 1.01112 1.22009 0.95781 0.98756 0.89521 1.61911 1.28747 1.02366 1.34287 1.22183 0.94932 0.92745 0.97082 1.21558 0.98684 0.97653 0.96222 1.21140 0.95418 0.98525 0.95093 1.22282 0.96506 0.99229 1.00800 1.22691 0.99654 0.97386 0.82153 1.87897 1.33562 1.93923 1.17408 1.22707 0.87694 0.96971 0.94538 1.22218 1.00117 0.99479 0.96853 1.22053 0.94311 0.89150 1.00668 1.21421 0.97857 0.96847 0.97134 0.92930 0.99454 0.99607 0.93573 0.92709 0.92051 0.89306 0.95078 0.89971 0.94584 0.91511 0.92661 0.90123 0.92284 0.90106 0.92178 0.88366 0.92176 0.88126 0.89796 0.92103 0.95435 0.89943 0.93355 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.13 13.29 21.45 0.28 -57.84 16 2 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 3 Si 0.96 44.99 29.54 68.60 2.03 47.01 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 6 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.53 -30.46 8.45 25.60 0.22 -30.24 16 8 H 0.06 3.29 7.08 -2.91 -0.02 3.26 16 9 C 0.03 1.83 4.45 29.85 0.13 1.97 16 10 C -0.07 -3.14 2.20 -10.71 -0.02 -3.16 16 11 C -0.11 -3.77 5.38 30.65 0.16 -3.60 16 12 C 0.07 1.84 5.46 86.32 0.47 2.31 16 13 N -0.55 -14.77 4.66 -896.37 -4.17 -18.95 16 14 C 0.06 1.15 4.72 86.31 0.41 1.56 16 15 C -0.10 -1.87 4.62 30.60 0.14 -1.73 16 16 C -0.08 -1.20 2.27 -10.68 -0.02 -1.22 16 17 C -0.15 -2.20 5.10 30.69 0.16 -2.05 16 18 C 0.06 0.81 6.84 72.02 0.49 1.30 16 19 O -0.41 -7.45 10.77 -148.98 -1.60 -9.05 16 20 C 0.06 0.78 6.84 72.01 0.49 1.27 16 21 C -0.15 -2.09 5.42 30.68 0.17 -1.92 16 22 C 0.07 1.96 5.29 86.32 0.46 2.42 16 23 C -0.09 -3.63 5.15 30.65 0.16 -3.47 16 24 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 25 H -0.01 -0.76 8.14 -2.38 -0.02 -0.78 16 26 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 27 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 29 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.09 2.04 8.01 -2.39 -0.02 2.03 16 31 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 1.45 7.99 -2.39 -0.02 1.43 16 33 H 0.04 0.70 6.63 -2.39 -0.02 0.68 16 34 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.05 1.12 6.43 -2.39 -0.02 1.10 16 36 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.08 1.08 6.74 -2.39 -0.02 1.07 16 39 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 42 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.03 0.81 8.14 -2.39 -0.02 0.80 16 46 H 0.08 2.22 6.21 -2.39 -0.01 2.21 16 47 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 48 H 0.05 2.25 7.06 -2.39 -0.02 2.23 16 Total: -1.00 -66.00 360.11 1.29 -64.71 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: 0.88 Total: 10.39 kcal Atomic # 6 Polarization: -40.14 SS G_CDS: 3.87 Total: -36.27 kcal Atomic # 7 Polarization: -72.90 SS G_CDS: -3.89 Total: -76.79 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: -1.60 Total: -9.05 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -66.00 1.29 -64.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260179894.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.729 kcal (2) G-P(sol) polarization free energy of solvation -65.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds