Wall clock time and date at job start Tue Mar 31 2020 05:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99948 * 2 1 4 4 C 1.53006 * 109.47036 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47127 * 180.02562 * 4 3 2 6 6 N 1.46496 * 109.46953 * 179.97438 * 5 4 3 7 7 N 1.40080 * 126.04288 * 269.68897 * 6 5 4 8 8 C 1.30837 * 108.21132 * 179.85664 * 7 6 5 9 9 C 1.39868 * 108.19954 * 0.40639 * 8 7 6 10 10 C 1.34954 * 126.03516 * 90.00179 * 6 5 4 11 11 C 1.50699 * 126.12509 * 359.96079 * 10 6 5 12 12 N 1.46908 * 109.46798 * 274.99483 * 11 10 6 13 13 C 1.46896 * 110.99691 * 180.02562 * 12 11 10 14 14 C 1.53003 * 109.46969 * 180.02562 * 13 12 11 15 15 C 1.52993 * 109.47268 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.47360 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99477 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00219 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99844 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00099 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47331 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46917 * 120.00208 * 20 18 16 23 23 H 1.48499 * 109.47600 * 240.00583 * 20 18 16 24 24 H 1.09003 * 109.47182 * 59.99587 * 1 2 3 25 25 H 1.08999 * 109.47444 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47392 * 299.99575 * 1 2 3 27 27 H 1.09001 * 109.46798 * 60.00190 * 3 2 1 28 28 H 1.08993 * 109.47318 * 299.99656 * 3 2 1 29 29 H 1.09001 * 109.46801 * 300.00369 * 4 3 2 30 30 H 1.09001 * 109.46998 * 59.99965 * 4 3 2 31 31 H 1.08996 * 109.46952 * 300.00302 * 5 4 3 32 32 H 1.09001 * 109.46832 * 60.00321 * 5 4 3 33 33 H 1.07999 * 125.89962 * 180.14956 * 8 7 6 34 34 H 1.07999 * 126.04257 * 179.74429 * 9 8 7 35 35 H 1.08995 * 109.47713 * 34.99553 * 11 10 6 36 36 H 1.09001 * 109.47076 * 155.00255 * 11 10 6 37 37 H 1.00900 * 110.99660 * 303.95898 * 12 11 10 38 38 H 1.08999 * 109.47464 * 299.99813 * 13 12 11 39 39 H 1.09001 * 109.47279 * 60.00199 * 13 12 11 40 40 H 1.09004 * 109.47070 * 300.00481 * 14 13 12 41 41 H 1.09001 * 109.47056 * 59.99942 * 14 13 12 42 42 H 1.09004 * 109.47266 * 300.00114 * 15 14 13 43 43 H 1.09001 * 109.47331 * 59.99863 * 15 14 13 44 44 H 0.97005 * 119.99688 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0013 6 7 5.6182 2.4666 0.0025 7 7 6.4393 2.4075 1.1359 8 6 7.6809 2.3039 0.7363 9 6 7.6910 2.3030 -0.6624 10 6 6.4105 2.4040 -1.0881 11 6 5.9515 2.4398 -2.5230 12 7 5.5796 1.0848 -2.9521 13 6 5.1265 1.0810 -4.3494 14 6 4.7483 -0.3439 -4.7589 15 6 4.2770 -0.3481 -6.2145 16 6 3.9051 -1.7517 -6.6180 17 1 3.9954 -2.5597 -5.9072 18 6 3.4485 -2.0039 -7.8943 19 7 3.3381 -1.0198 -8.7597 20 14 2.9881 -3.7437 -8.3947 21 1 3.2017 -4.6618 -7.2472 22 1 1.5596 -3.7810 -8.7986 23 1 3.8366 -4.1716 -9.5359 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.6886 1.8463 0.8900 28 1 1.6887 1.8463 -0.8899 29 1 3.8567 0.6438 0.8909 30 1 3.8575 0.6435 -0.8891 31 1 3.8365 3.1234 -0.8886 32 1 3.8358 3.1229 0.8913 33 1 8.5484 2.2354 1.3759 34 1 8.5662 2.2339 -1.2914 35 1 5.0879 3.0989 -2.6120 36 1 6.7590 2.8117 -3.1537 37 1 6.3445 0.4406 -2.8184 38 1 4.2574 1.7307 -4.4514 39 1 5.9286 1.4434 -4.9925 40 1 5.6172 -0.9941 -4.6568 41 1 3.9461 -0.7059 -4.1159 42 1 3.4082 0.3021 -6.3170 43 1 5.0795 0.0137 -6.8573 44 1 3.0172 -1.1974 -9.6578 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282704383.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:40 Heat of formation + Delta-G solvation = 11.487040 kcal Electronic energy + Delta-G solvation = -21706.684635 eV Core-core repulsion = 18467.234203 eV Total energy + Delta-G solvation = -3239.450432 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.31234 -38.09156 -36.55358 -34.87396 -33.66958 -31.89296 -30.86800 -29.90215 -27.12704 -26.74828 -25.22421 -24.50917 -22.26447 -22.14528 -21.11985 -20.33040 -19.51270 -17.16579 -16.41659 -16.31763 -16.17624 -15.65108 -15.28320 -14.91469 -14.67836 -14.47031 -14.21363 -13.90963 -13.71688 -13.55045 -13.19922 -12.40690 -12.36953 -12.32527 -11.95458 -11.73610 -11.64785 -11.44860 -11.22087 -11.08663 -10.87238 -10.66846 -10.59558 -10.48836 -9.79490 -9.71389 -9.48473 -9.28218 -9.04732 -8.62172 -8.34487 -8.28554 -5.99474 -4.01196 1.76843 2.39667 2.77413 3.31871 3.39365 3.44366 3.64288 4.32259 4.40631 4.48429 4.63973 4.85779 4.89457 4.95456 5.02614 5.10024 5.12610 5.23207 5.26587 5.30232 5.36709 5.45435 5.57231 5.59421 5.64902 5.73261 5.83298 5.91552 6.09364 6.15863 6.27239 6.60220 6.67264 6.70418 6.93295 7.04536 7.11812 7.21537 7.49237 7.67974 7.68757 7.82661 8.00973 8.44474 9.06225 9.62999 11.12004 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.012984 B = 0.003698 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.995188 B = 7569.498219 C = 9228.180232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.387 6.387 3 C 0.068 3.932 4 C -0.139 4.139 5 C 0.142 3.858 6 N -0.356 5.356 7 N -0.300 5.300 8 C 0.044 3.956 9 C -0.274 4.274 10 C 0.098 3.902 11 C 0.116 3.884 12 N -0.685 5.685 13 C 0.060 3.940 14 C -0.107 4.107 15 C 0.022 3.978 16 C -0.517 4.517 17 H 0.056 0.944 18 C 0.056 3.944 19 N -0.897 5.897 20 Si 0.891 3.109 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.044 0.956 25 H 0.087 0.913 26 H 0.038 0.962 27 H 0.046 0.954 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.181 0.819 34 H 0.144 0.856 35 H 0.081 0.919 36 H 0.056 0.944 37 H 0.344 0.656 38 H 0.067 0.933 39 H 0.028 0.972 40 H 0.046 0.954 41 H 0.057 0.943 42 H 0.015 0.985 43 H 0.014 0.986 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.897 9.815 18.412 20.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.305 6.305 3 C -0.009 4.009 4 C -0.178 4.178 5 C 0.020 3.980 6 N -0.138 5.138 7 N -0.121 5.121 8 C -0.141 4.141 9 C -0.304 4.304 10 C -0.030 4.030 11 C -0.014 4.014 12 N -0.317 5.317 13 C -0.068 4.068 14 C -0.145 4.145 15 C -0.015 4.015 16 C -0.556 4.556 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.537 5.537 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.062 0.938 25 H 0.105 0.895 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.119 0.881 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.198 0.802 34 H 0.162 0.838 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.162 0.838 38 H 0.086 0.914 39 H 0.046 0.954 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.034 0.966 43 H 0.032 0.968 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.378 9.820 19.501 21.837 hybrid contribution 0.915 -0.619 -1.552 1.905 sum 1.294 9.201 17.949 20.211 Atomic orbital electron populations 1.22750 0.80871 1.02972 0.99856 1.87912 1.19778 1.27475 1.95371 1.22331 0.93314 0.85200 1.00068 1.21911 0.93397 0.96708 1.05743 1.21454 0.74543 0.98051 1.03953 1.48491 1.06255 1.55852 1.03207 1.77335 1.01949 1.24640 1.08170 1.23770 0.95230 1.00114 0.95018 1.21260 0.96421 1.17634 0.95124 1.21043 0.90986 1.00548 0.90422 1.20497 1.00054 0.93082 0.87800 1.60601 1.41662 1.05913 1.23524 1.22157 0.98960 1.00359 0.85321 1.21621 1.00305 0.92563 0.99974 1.19066 0.96225 0.97098 0.89147 1.21295 1.43135 0.94080 0.97051 0.92602 1.25023 0.95794 0.96981 0.96720 1.69978 1.47227 1.31162 1.05296 0.86550 0.78076 0.84964 0.78521 1.19688 1.21033 1.21048 0.93785 0.89496 0.94333 0.93564 0.92867 0.90703 0.88112 0.88866 0.89144 0.80243 0.83781 0.90085 0.92558 0.83807 0.91414 0.95403 0.93563 0.92471 0.96618 0.96791 0.93119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.39 -5.02 10.70 -35.23 -0.38 -5.40 16 3 C 0.07 0.71 5.94 37.16 0.22 0.93 16 4 C -0.14 -1.58 5.91 -26.73 -0.16 -1.74 16 5 C 0.14 1.42 6.24 -4.05 -0.03 1.39 16 6 N -0.36 -4.37 3.61 -57.14 -0.21 -4.58 16 7 N -0.30 -3.98 12.57 30.62 0.39 -3.59 16 8 C 0.04 0.50 12.03 -17.37 -0.21 0.29 16 9 C -0.27 -3.11 10.72 -40.01 -0.43 -3.54 16 10 C 0.10 1.18 6.44 -82.26 -0.53 0.65 16 11 C 0.12 1.32 5.86 -4.97 -0.03 1.29 16 12 N -0.69 -9.28 6.38 -115.05 -0.73 -10.02 16 13 C 0.06 0.97 5.68 -3.82 -0.02 0.95 16 14 C -0.11 -2.16 5.41 -26.73 -0.14 -2.30 16 15 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 16 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -26.96 13.29 55.43 0.74 -26.23 16 20 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.10 1.40 8.03 -51.93 -0.42 0.98 16 31 H 0.09 0.80 7.15 -51.93 -0.37 0.43 16 32 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.18 1.43 8.06 -52.49 -0.42 1.01 16 34 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.08 0.86 7.24 -51.93 -0.38 0.49 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.34 4.64 8.72 -39.29 -0.34 4.30 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 369.49 15.07 5.57 5.57 Total: -1.00 -32.56 369.49 -8.22 -40.78 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -7.81 Total: 0.47 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -0.76 Total: -13.76 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: 0.18 Total: -44.42 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: -0.38 Total: -5.40 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.56 -8.22 -40.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282704383.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.267 kcal (2) G-P(sol) polarization free energy of solvation -32.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds