Wall clock time and date at job start Tue Mar 31 2020 05:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47056 * 2 1 4 4 C 1.53001 * 109.47134 * 299.99799 * 3 2 1 5 5 C 1.52991 * 109.47518 * 300.00333 * 4 3 2 6 6 O 1.42905 * 109.47315 * 299.99800 * 5 4 3 7 7 C 1.53001 * 109.47518 * 179.97438 * 5 4 3 8 8 N 1.46900 * 109.47465 * 187.70719 * 7 5 4 9 9 C 1.46908 * 110.99682 * 269.68103 * 8 7 5 10 10 C 1.50701 * 109.46936 * 167.65184 * 9 8 7 11 11 H 1.08001 * 119.99790 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00231 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00570 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 119.99791 * 0.02562 * 12 10 9 15 15 H 1.48505 * 109.47110 * 89.99613 * 14 12 10 16 16 H 1.48496 * 109.47524 * 209.99594 * 14 12 10 17 17 H 1.48504 * 109.47146 * 330.00303 * 14 12 10 18 18 C 1.46894 * 111.00341 * 145.72878 * 8 7 5 19 19 C 1.53006 * 109.47168 * 289.08205 * 18 8 7 20 20 C 1.53005 * 117.51943 * 117.04047 * 19 18 8 21 21 C 1.52994 * 117.50166 * 185.67294 * 19 18 8 22 22 C 1.52997 * 109.47190 * 59.99701 * 5 4 3 23 23 C 1.52999 * 109.47378 * 300.00246 * 22 5 4 24 24 H 1.09007 * 109.47545 * 59.99483 * 1 2 3 25 25 H 1.08997 * 109.47650 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47282 * 300.00129 * 1 2 3 27 27 H 1.08997 * 109.47000 * 119.99969 * 2 1 3 28 28 H 1.09008 * 109.47017 * 180.02562 * 3 2 1 29 29 H 1.08993 * 109.47393 * 60.00226 * 3 2 1 30 30 H 1.09009 * 109.47010 * 180.02562 * 4 3 2 31 31 H 1.09000 * 109.47118 * 60.00742 * 4 3 2 32 32 H 0.96703 * 114.00391 * 160.80070 * 6 5 4 33 33 H 1.09000 * 109.47040 * 67.70112 * 7 5 4 34 34 H 1.08998 * 109.46904 * 307.70915 * 7 5 4 35 35 H 1.08997 * 109.47185 * 287.65355 * 9 8 7 36 36 H 1.09006 * 109.47006 * 47.65447 * 9 8 7 37 37 H 0.97001 * 120.00487 * 180.02562 * 13 12 10 38 38 H 1.08998 * 109.47530 * 169.07914 * 18 8 7 39 39 H 1.09005 * 109.47163 * 49.07712 * 18 8 7 40 40 H 1.09003 * 115.54415 * 331.34486 * 19 18 8 41 41 H 1.08997 * 117.49927 * 214.97048 * 20 19 18 42 42 H 1.08999 * 117.49516 * 359.97438 * 20 19 18 43 43 H 1.09001 * 117.49496 * 359.97377 * 21 19 18 44 44 H 1.09000 * 117.50069 * 144.99332 * 21 19 18 45 45 H 1.08998 * 109.46851 * 60.00572 * 22 5 4 46 46 H 1.09002 * 109.47512 * 180.02562 * 22 5 4 47 47 H 1.08999 * 109.46732 * 299.99641 * 23 22 5 48 48 H 1.08992 * 109.47331 * 179.97438 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5300 2.1637 -1.2493 5 6 2.0399 1.4425 -2.4985 6 8 3.4689 1.4425 -2.4986 7 6 1.5294 2.1634 -3.7478 8 7 1.8615 1.3719 -4.9399 9 6 3.1733 1.7561 -5.4781 10 6 3.6156 0.7382 -6.4977 11 1 2.9850 -0.1090 -6.7236 12 6 4.8246 0.8891 -7.1429 13 7 5.2108 0.0006 -8.0323 14 14 5.9150 2.3548 -6.7526 15 1 6.8344 2.0055 -5.6400 16 1 6.7079 2.7160 -7.9551 17 1 5.0694 3.5081 -6.3523 18 6 0.8153 1.4975 -5.9635 19 6 -0.4406 0.7548 -5.5030 20 6 -1.7084 1.5813 -5.2786 21 6 -1.6042 0.6542 -6.4912 22 6 1.5299 0.0000 -2.4985 23 6 2.0399 -0.7213 -1.2493 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 0.8899 30 1 1.8937 3.1913 -1.2495 31 1 0.4400 2.1638 -1.2492 32 1 3.8622 0.7738 -3.0759 33 1 2.0005 3.1437 -3.8195 34 1 0.4481 2.2839 -3.6813 35 1 3.0996 2.7354 -5.9508 36 1 3.9006 1.7978 -4.6673 37 1 6.0617 0.1066 -8.4859 38 1 1.1695 1.0666 -6.8999 39 1 0.5794 2.5510 -6.1146 40 1 -0.2686 -0.0931 -4.8399 41 1 -2.3706 1.2771 -4.4680 42 1 -1.6479 2.6546 -5.4586 43 1 -1.4751 1.1175 -7.4694 44 1 -2.1978 -0.2599 -6.4785 45 1 0.4399 0.0001 -2.4985 46 1 1.8935 -0.5140 -3.3883 47 1 3.1299 -0.7213 -1.2494 48 1 1.6762 -1.7487 -1.2491 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305204894.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:51 Heat of formation + Delta-G solvation = -42.324196 kcal Electronic energy + Delta-G solvation = -24267.666182 eV Core-core repulsion = 21129.422663 eV Total energy + Delta-G solvation = -3138.243519 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.77827 -37.70754 -35.92126 -34.57253 -32.47141 -31.01221 -30.46702 -28.14883 -27.50959 -25.71853 -23.54662 -22.51200 -22.16993 -20.93081 -20.45264 -19.51443 -18.50913 -16.84552 -15.98730 -15.78445 -15.47938 -14.76932 -14.50225 -14.43370 -14.10327 -13.86499 -13.56418 -13.15959 -12.73671 -12.63023 -12.31163 -12.19394 -12.00915 -11.86024 -11.73246 -11.63825 -11.45267 -11.30741 -11.10234 -10.91142 -10.62638 -10.48673 -10.47685 -10.24069 -10.13598 -9.94321 -9.79326 -9.59108 -9.53380 -9.47231 -8.95438 -8.54820 -7.35560 -6.05254 -4.02507 3.30264 3.37785 3.41776 4.08574 4.42948 4.56666 4.64944 4.89941 4.97213 5.05242 5.12042 5.22294 5.27815 5.33168 5.34798 5.46522 5.58060 5.58673 5.68076 5.74653 5.78504 5.80248 5.85613 5.91534 5.94478 6.03259 6.07260 6.08154 6.13873 6.23117 6.25020 6.30009 6.32766 6.42001 6.45856 6.50657 6.52024 6.70653 6.76643 6.85881 6.94666 7.02363 7.62032 7.91564 8.05341 8.29386 8.65491 9.04127 9.57320 11.07582 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.013459 B = 0.006657 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.922371 B = 4204.947047 C = 5534.387123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.091 4.091 3 C -0.108 4.108 4 C -0.108 4.108 5 C 0.150 3.850 6 O -0.563 6.563 7 C 0.028 3.972 8 N -0.521 5.521 9 C 0.156 3.844 10 C -0.509 4.509 11 H 0.081 0.919 12 C 0.070 3.930 13 N -0.900 5.900 14 Si 0.872 3.128 15 H -0.275 1.275 16 H -0.288 1.288 17 H -0.269 1.269 18 C 0.091 3.909 19 C -0.131 4.131 20 C -0.193 4.193 21 C -0.182 4.182 22 C -0.135 4.135 23 C -0.114 4.114 24 H 0.062 0.938 25 H 0.049 0.951 26 H 0.047 0.953 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.384 0.616 33 H 0.035 0.965 34 H 0.066 0.934 35 H -0.015 1.015 36 H 0.037 0.963 37 H 0.263 0.737 38 H 0.093 0.907 39 H 0.019 0.981 40 H 0.109 0.891 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.063 0.937 46 H 0.089 0.911 47 H 0.064 0.936 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.326 1.928 13.005 17.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.109 4.109 3 C -0.145 4.145 4 C -0.145 4.145 5 C 0.108 3.892 6 O -0.372 6.372 7 C -0.101 4.101 8 N -0.244 5.244 9 C 0.030 3.970 10 C -0.547 4.547 11 H 0.099 0.901 12 C -0.132 4.132 13 N -0.539 5.539 14 Si 0.700 3.300 15 H -0.200 1.200 16 H -0.214 1.214 17 H -0.194 1.194 18 C -0.037 4.037 19 C -0.150 4.150 20 C -0.230 4.230 21 C -0.220 4.220 22 C -0.173 4.173 23 C -0.151 4.151 24 H 0.080 0.920 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.235 0.765 33 H 0.054 0.946 34 H 0.085 0.915 35 H 0.003 0.997 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.111 0.889 39 H 0.037 0.963 40 H 0.127 0.873 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.082 0.918 46 H 0.107 0.893 47 H 0.083 0.917 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.229 1.882 13.423 17.601 hybrid contribution 0.641 1.214 -0.602 1.498 sum -10.588 3.095 12.821 16.913 Atomic orbital electron populations 1.21938 0.95852 1.01290 1.01617 1.21086 0.95426 0.96267 0.98148 1.21446 1.01471 0.94832 0.96755 1.21554 0.99945 0.99157 0.93882 1.21009 0.81267 0.94329 0.92562 1.86371 1.18922 1.61744 1.70146 1.22752 0.99613 0.95326 0.92401 1.61886 1.03180 1.54250 1.05080 1.20374 0.86242 0.94932 0.95466 1.21050 1.04262 1.09218 1.20220 0.90128 1.24876 0.97573 0.95870 0.94848 1.69892 1.21947 1.35266 1.26805 0.86911 0.81174 0.83967 0.77992 1.20041 1.21427 1.19369 1.21624 0.89418 0.96167 0.96516 1.22435 0.89123 1.01484 1.01958 1.23028 1.02182 0.97503 1.00276 1.22894 1.02973 1.01341 0.94754 1.22125 1.00831 0.95831 0.98501 1.21546 1.01059 0.98205 0.94307 0.91954 0.93155 0.93362 0.92011 0.91182 0.92880 0.92073 0.91147 0.76549 0.94622 0.91516 0.99737 0.94528 0.92729 0.88874 0.96258 0.87275 0.89543 0.89482 0.89055 0.89243 0.91845 0.89252 0.91679 0.92613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 8.50 37.16 0.32 -1.21 16 2 C -0.09 -1.03 3.19 -90.62 -0.29 -1.32 16 3 C -0.11 -1.29 5.31 -26.73 -0.14 -1.43 16 4 C -0.11 -1.40 4.66 -26.73 -0.12 -1.52 16 5 C 0.15 2.26 0.82 -90.63 -0.07 2.18 16 6 O -0.56 -9.77 10.57 -35.23 -0.37 -10.14 16 7 C 0.03 0.47 4.20 -3.82 -0.02 0.45 16 8 N -0.52 -9.97 3.21 -236.06 -0.76 -10.73 16 9 C 0.16 3.61 3.35 -4.97 -0.02 3.59 16 10 C -0.51 -13.80 8.88 -34.44 -0.31 -14.11 16 11 H 0.08 2.39 7.65 -52.49 -0.40 1.99 16 12 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 13 N -0.90 -27.05 13.96 55.43 0.77 -26.28 16 14 Si 0.87 21.44 27.47 -169.99 -4.67 16.78 16 15 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 17 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 18 C 0.09 1.66 5.01 -3.82 -0.02 1.64 16 19 C -0.13 -1.97 5.01 -90.62 -0.45 -2.42 16 20 C -0.19 -2.43 9.85 -26.73 -0.26 -2.69 16 21 C -0.18 -2.40 10.25 -26.73 -0.27 -2.67 16 22 C -0.14 -1.91 4.20 -26.73 -0.11 -2.02 16 23 C -0.11 -1.45 5.31 -26.73 -0.14 -1.59 16 24 H 0.06 0.66 4.81 -51.92 -0.25 0.41 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.94 7.68 -51.92 -0.40 0.55 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 31 H 0.07 0.82 6.43 -51.93 -0.33 0.49 16 32 H 0.38 6.85 7.48 45.56 0.34 7.19 16 33 H 0.04 0.65 7.78 -51.93 -0.40 0.24 16 34 H 0.07 1.01 6.72 -51.93 -0.35 0.66 16 35 H -0.02 -0.37 7.15 -51.93 -0.37 -0.74 16 36 H 0.04 0.85 5.01 -51.93 -0.26 0.59 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.09 1.96 6.78 -51.93 -0.35 1.61 16 39 H 0.02 0.35 7.80 -51.93 -0.41 -0.06 16 40 H 0.11 1.68 8.14 -51.93 -0.42 1.26 16 41 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.09 1.09 8.03 -51.93 -0.42 0.67 16 43 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.06 0.85 6.43 -51.93 -0.33 0.51 16 46 H 0.09 1.49 7.41 -51.93 -0.38 1.10 16 47 H 0.06 0.89 7.68 -51.93 -0.40 0.49 16 48 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 354.54 15.07 5.34 5.34 Total: -1.00 -28.38 354.54 -9.81 -38.19 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -8.11 Total: 8.09 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: -2.02 Total: -21.24 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 0.02 Total: -37.01 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: -0.37 Total: -10.14 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.38 -9.81 -38.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305204894.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.137 kcal (2) G-P(sol) polarization free energy of solvation -28.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds