Wall clock time and date at job start Tue Mar 31 2020 05:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47256 * 2 1 4 4 C 1.53005 * 109.47145 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46858 * 300.00103 * 4 3 2 6 6 O 1.42898 * 109.46801 * 299.99820 * 5 4 3 7 7 C 1.52996 * 109.46874 * 180.02562 * 5 4 3 8 8 N 1.46495 * 109.47053 * 183.62580 * 7 5 4 9 9 C 1.36940 * 120.00214 * 96.26022 * 8 7 5 10 10 H 1.07997 * 120.00003 * 220.88384 * 9 8 7 11 11 C 1.38805 * 120.00102 * 40.87815 * 9 8 7 12 12 N 1.31627 * 119.99941 * 213.96392 * 11 9 8 13 13 Si 1.86798 * 119.99968 * 33.96034 * 11 9 8 14 14 H 1.48500 * 109.46976 * 95.88614 * 13 11 9 15 15 H 1.48504 * 109.47193 * 215.88574 * 13 11 9 16 16 H 1.48499 * 109.47136 * 335.88712 * 13 11 9 17 17 C 1.46502 * 120.00088 * 276.25576 * 8 7 5 18 18 C 1.54265 * 110.03496 * 237.16629 * 17 8 7 19 19 C 1.54891 * 104.19871 * 217.10474 * 18 17 8 20 20 C 1.54896 * 102.74662 * 37.94097 * 19 18 17 21 21 C 1.53879 * 110.03296 * 119.99882 * 17 8 7 22 22 C 1.52998 * 109.47327 * 60.00009 * 5 4 3 23 23 C 1.52999 * 109.47045 * 119.99895 * 2 1 3 24 24 H 1.09006 * 109.46946 * 60.00389 * 1 2 3 25 25 H 1.09003 * 109.47254 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47511 * 300.00329 * 1 2 3 27 27 H 1.09006 * 109.47221 * 239.99876 * 2 1 3 28 28 H 1.08993 * 109.47262 * 59.99846 * 3 2 1 29 29 H 1.09006 * 109.46825 * 299.99685 * 3 2 1 30 30 H 1.08993 * 109.47181 * 179.97438 * 4 3 2 31 31 H 1.09002 * 109.46769 * 59.99436 * 4 3 2 32 32 H 0.96698 * 114.00095 * 179.97438 * 6 5 4 33 33 H 1.09001 * 109.47213 * 303.62193 * 7 5 4 34 34 H 1.08996 * 109.47327 * 63.62344 * 7 5 4 35 35 H 0.97005 * 119.99319 * 180.02562 * 12 11 9 36 36 H 1.08996 * 110.01731 * 358.61249 * 17 8 7 37 37 H 1.09004 * 110.48551 * 335.78363 * 18 17 8 38 38 H 1.09003 * 110.48623 * 98.42468 * 18 17 8 39 39 H 1.08995 * 110.75875 * 279.63482 * 19 18 17 40 40 H 1.08993 * 110.75774 * 156.25157 * 19 18 17 41 41 H 1.09000 * 110.48750 * 203.37995 * 20 19 18 42 42 H 1.09003 * 110.48481 * 80.73652 * 20 19 18 43 43 H 1.08995 * 110.03356 * 238.57059 * 21 17 8 44 44 H 1.09001 * 110.03076 * 359.95682 * 21 17 8 45 45 H 1.09000 * 109.47239 * 59.99689 * 22 5 4 46 46 H 1.08998 * 109.47092 * 180.02562 * 22 5 4 47 47 H 1.09000 * 109.47363 * 299.99732 * 23 2 1 48 48 H 1.09003 * 109.47194 * 59.99842 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0805 0.7209 1.2483 6 8 3.6046 1.3945 2.4153 7 6 5.6105 0.7215 1.2480 8 7 6.0993 -0.0436 2.3977 9 6 6.4498 -1.3586 2.2461 10 1 6.1824 -2.0797 3.0043 11 6 7.1489 -1.7649 1.1178 12 7 6.9347 -2.9582 0.6052 13 14 8.3934 -0.6182 0.3270 14 1 9.7532 -0.9418 0.8285 15 1 8.3562 -0.7886 -1.1478 16 1 8.0603 0.7873 0.6714 17 6 6.2131 0.5982 3.7097 18 6 7.6628 0.4915 4.2262 19 6 7.5074 0.2675 5.7509 20 6 6.2691 -0.6591 5.8357 21 6 5.3269 -0.1334 4.7331 22 6 3.5705 -0.7215 1.2483 23 6 2.0399 -0.7212 1.2492 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6767 1.9563 -0.8901 30 1 3.9334 2.4700 -0.0011 31 1 3.9329 0.9286 -0.8908 32 1 3.8899 0.9906 3.2463 33 1 5.9738 0.2653 0.3271 34 1 5.9735 1.7471 1.3132 35 1 7.4235 -3.2422 -0.1831 36 1 5.9169 1.6448 3.6401 37 1 8.1704 -0.3562 3.7659 38 1 8.2067 1.4155 4.0299 39 1 7.3193 1.2112 6.2629 40 1 8.3883 -0.2267 6.1606 41 1 5.7958 -0.5749 6.8140 42 1 6.5515 -1.6927 5.6353 43 1 4.6013 0.5584 5.1607 44 1 4.8116 -0.9655 4.2534 45 1 3.9334 -1.2352 0.3581 46 1 3.9338 -1.2353 2.1383 47 1 1.6767 -0.2074 2.1392 48 1 1.6766 -1.7489 1.2493 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305206970.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:27 Heat of formation + Delta-G solvation = -63.718911 kcal Electronic energy + Delta-G solvation = -24889.762320 eV Core-core repulsion = 21750.591056 eV Total energy + Delta-G solvation = -3139.171263 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.34714 -37.63542 -35.30488 -33.92252 -31.56681 -31.01740 -30.13850 -28.00688 -27.69897 -26.41643 -24.22296 -22.27680 -22.02073 -20.24177 -20.00605 -19.17348 -18.99230 -16.58240 -15.74383 -15.57947 -15.20662 -14.64423 -14.29819 -13.95258 -13.70452 -13.59334 -13.14790 -12.90097 -12.87081 -12.62351 -12.37298 -12.11499 -11.79712 -11.50956 -11.40063 -11.11456 -10.99886 -10.75069 -10.71561 -10.62999 -10.50132 -10.39828 -10.35442 -10.15480 -10.12660 -10.01051 -9.85978 -9.81288 -9.54744 -9.23217 -9.00601 -8.36199 -6.68622 -6.10874 -3.40228 3.34800 3.48209 3.54651 4.53717 4.84580 4.88506 5.16854 5.18860 5.20995 5.27747 5.34908 5.37978 5.56976 5.65507 5.71981 5.83810 5.94342 5.99694 6.02420 6.02981 6.10573 6.17137 6.18841 6.21021 6.22126 6.30676 6.37600 6.38145 6.41932 6.42250 6.50917 6.52830 6.61990 6.69487 6.75427 6.76249 6.78238 6.87708 6.88849 7.03615 7.15493 7.18293 7.36746 8.02217 8.37553 8.45582 9.01679 9.71311 10.17484 11.04431 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015389 B = 0.007524 C = 0.006069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.006590 B = 3720.400383 C = 4612.861953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 C -0.104 4.104 4 C -0.105 4.105 5 C 0.117 3.883 6 O -0.570 6.570 7 C 0.128 3.872 8 N -0.594 5.594 9 C -0.267 4.267 10 H 0.076 0.924 11 C 0.053 3.947 12 N -0.875 5.875 13 Si 0.839 3.161 14 H -0.291 1.291 15 H -0.297 1.297 16 H -0.263 1.263 17 C 0.163 3.837 18 C -0.135 4.135 19 C -0.122 4.122 20 C -0.115 4.115 21 C -0.140 4.140 22 C -0.123 4.123 23 C -0.109 4.109 24 H 0.047 0.953 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.371 0.629 33 H 0.061 0.939 34 H 0.037 0.963 35 H 0.262 0.738 36 H 0.055 0.945 37 H 0.083 0.917 38 H 0.045 0.955 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.049 0.951 42 H 0.064 0.936 43 H 0.047 0.953 44 H 0.076 0.924 45 H 0.066 0.934 46 H 0.086 0.914 47 H 0.058 0.942 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.084 6.904 3.058 10.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 C -0.141 4.141 4 C -0.143 4.143 5 C 0.075 3.925 6 O -0.378 6.378 7 C 0.001 3.999 8 N -0.315 5.315 9 C -0.395 4.395 10 H 0.094 0.906 11 C -0.150 4.150 12 N -0.514 5.514 13 Si 0.666 3.334 14 H -0.219 1.219 15 H -0.224 1.224 16 H -0.187 1.187 17 C 0.056 3.944 18 C -0.174 4.174 19 C -0.160 4.160 20 C -0.153 4.153 21 C -0.179 4.179 22 C -0.161 4.161 23 C -0.147 4.147 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.220 0.780 33 H 0.079 0.921 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.083 0.917 43 H 0.066 0.934 44 H 0.095 0.905 45 H 0.085 0.915 46 H 0.104 0.896 47 H 0.077 0.923 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.322 7.139 2.463 10.519 hybrid contribution 1.277 0.120 -0.231 1.303 sum -6.046 7.259 2.232 9.707 Atomic orbital electron populations 1.21818 0.96143 1.01099 1.01069 1.21145 0.94536 0.96408 0.99008 1.21446 0.95449 0.96136 1.01094 1.21486 0.95779 1.00238 0.96838 1.21836 0.94860 0.91145 0.84675 1.86331 1.77482 1.57652 1.16336 1.21782 0.91504 0.94638 0.91966 1.44262 1.73815 1.09726 1.03681 1.18413 1.31475 0.82450 1.07138 0.90646 1.25523 0.97621 0.94706 0.97101 1.70068 1.39306 1.21055 1.20958 0.87373 0.84560 0.83718 0.77787 1.21887 1.22368 1.18736 1.21189 0.92748 0.94219 0.86205 1.22799 0.99044 1.01464 0.94096 1.22412 0.97696 0.98629 0.97281 1.22214 0.95979 0.99623 0.97436 1.22671 0.98032 1.00557 0.96687 1.21958 0.93061 0.96445 1.04652 1.21563 0.97160 0.98885 0.97068 0.93367 0.93119 0.93004 0.91776 0.91501 0.93230 0.92267 0.91346 0.77954 0.92118 0.94512 0.92834 0.92648 0.89806 0.93651 0.92714 0.92722 0.93252 0.91697 0.93410 0.90514 0.91503 0.89593 0.92339 0.93079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.19 37.16 0.34 -1.43 16 2 C -0.09 -1.35 2.72 -90.62 -0.25 -1.59 16 3 C -0.10 -1.52 5.06 -26.73 -0.14 -1.66 16 4 C -0.11 -1.73 4.95 -26.73 -0.13 -1.86 16 5 C 0.12 2.15 0.78 -90.62 -0.07 2.07 16 6 O -0.57 -10.24 11.39 -35.23 -0.40 -10.64 16 7 C 0.13 2.64 3.25 -4.05 -0.01 2.62 16 8 N -0.59 -12.56 1.40 -164.40 -0.23 -12.79 16 9 C -0.27 -6.59 6.20 -15.06 -0.09 -6.68 16 10 H 0.08 2.05 7.39 -52.49 -0.39 1.66 16 11 C 0.05 1.41 4.94 -17.43 -0.09 1.32 16 12 N -0.88 -24.79 13.97 55.49 0.78 -24.01 16 13 Si 0.84 20.68 26.47 -169.99 -4.50 16.18 16 14 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 15 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 16 H -0.26 -6.30 6.21 56.52 0.35 -5.95 16 17 C 0.16 3.01 2.31 -66.81 -0.15 2.85 16 18 C -0.13 -2.46 6.41 -25.07 -0.16 -2.62 16 19 C -0.12 -1.87 6.91 -24.73 -0.17 -2.04 16 20 C -0.11 -1.78 6.83 -25.07 -0.17 -1.96 16 21 C -0.14 -2.32 4.79 -25.61 -0.12 -2.45 16 22 C -0.12 -2.35 4.30 -26.70 -0.11 -2.47 16 23 C -0.11 -1.77 5.06 -26.70 -0.14 -1.91 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.07 1.03 7.68 -51.93 -0.40 0.63 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.37 6.45 5.13 45.56 0.23 6.68 16 33 H 0.06 1.37 5.15 -51.93 -0.27 1.11 16 34 H 0.04 0.75 8.06 -51.93 -0.42 0.33 16 35 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.06 0.99 7.49 -51.93 -0.39 0.60 16 37 H 0.08 1.78 7.00 -51.93 -0.36 1.42 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.05 0.70 7.70 -51.93 -0.40 0.30 16 44 H 0.08 1.43 6.67 -51.93 -0.35 1.09 16 45 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 46 H 0.09 1.83 6.24 -51.93 -0.32 1.51 16 47 H 0.06 0.95 7.68 -51.93 -0.40 0.55 16 48 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 345.85 15.07 5.21 5.21 Total: -1.00 -26.15 345.85 -9.17 -35.32 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -8.56 Total: 8.50 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -1.47 Total: -17.78 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.55 Total: -36.80 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: -0.40 Total: -10.64 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.50 Total: 16.18 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -26.15 -9.17 -35.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305206970.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.397 kcal (2) G-P(sol) polarization free energy of solvation -26.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds