Wall clock time and date at job start Tue Mar 31 2020 05:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 110.99632 * 2 1 4 4 C 1.50697 * 112.85315 * 55.83118 * 3 2 1 5 5 O 1.21282 * 119.99871 * 226.91392 * 4 3 2 6 6 N 1.34773 * 119.99873 * 46.91130 * 4 3 2 7 7 C 1.47078 * 120.88617 * 352.48237 * 6 4 3 8 8 C 1.53696 * 108.27770 * 128.75584 * 7 6 4 9 9 N 1.46894 * 109.25876 * 54.08294 * 8 7 6 10 10 C 1.46898 * 110.99980 * 172.60505 * 9 8 7 11 11 C 1.50702 * 109.46887 * 59.42680 * 10 9 8 12 12 H 1.07998 * 120.00096 * 5.11825 * 11 10 9 13 13 C 1.37878 * 119.99768 * 185.13003 * 11 10 9 14 14 N 1.31511 * 120.00494 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99903 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47099 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47054 * 119.99379 * 15 13 11 18 18 H 1.48496 * 109.47225 * 239.99580 * 15 13 11 19 19 C 1.46893 * 111.26893 * 296.76084 * 9 8 7 20 20 C 1.47080 * 120.88063 * 172.76293 * 6 4 3 21 21 C 1.53781 * 113.61410 * 284.51879 * 3 2 1 22 22 C 1.53780 * 87.08360 * 220.02056 * 21 3 2 23 23 C 1.53781 * 87.08071 * 25.43560 * 22 21 3 24 24 H 1.08999 * 109.47567 * 294.55100 * 1 2 3 25 25 H 1.09006 * 109.47023 * 54.55694 * 1 2 3 26 26 H 1.09002 * 109.46737 * 174.55151 * 1 2 3 27 27 H 1.00893 * 111.00304 * 236.04346 * 2 1 3 28 28 H 1.08999 * 109.63049 * 248.52622 * 7 6 4 29 29 H 1.09002 * 109.62571 * 9.10392 * 7 6 4 30 30 H 1.09007 * 109.64710 * 294.08147 * 8 7 6 31 31 H 1.09000 * 109.42153 * 173.95500 * 8 7 6 32 32 H 1.09003 * 109.46952 * 179.42026 * 10 9 8 33 33 H 1.09003 * 109.47510 * 299.42326 * 10 9 8 34 34 H 0.96995 * 120.00353 * 180.02562 * 14 13 11 35 35 H 1.09001 * 109.49602 * 303.13911 * 19 9 8 36 36 H 1.09008 * 109.48825 * 183.06520 * 19 9 8 37 37 H 1.08999 * 109.62936 * 350.89659 * 20 6 4 38 38 H 1.08999 * 109.63220 * 111.28130 * 20 6 4 39 39 H 1.09000 * 113.61410 * 334.58027 * 21 3 2 40 40 H 1.09005 * 113.61025 * 105.47590 * 21 3 2 41 41 H 1.08992 * 113.61889 * 270.88579 * 22 21 3 42 42 H 1.09003 * 113.60814 * 139.98281 * 22 21 3 43 43 H 1.08997 * 113.61416 * 220.01687 * 23 22 21 44 44 H 1.09004 * 113.61969 * 89.11124 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.4769 2.1973 1.1490 5 8 1.0588 3.3182 0.9499 6 7 1.4779 1.6903 2.3977 7 6 1.8245 0.2817 2.6403 8 6 2.9046 0.2323 3.7327 9 7 2.4331 0.9675 4.9137 10 6 3.3576 0.7986 6.0427 11 6 4.7221 1.3078 5.6551 12 1 4.8669 1.7911 4.7002 13 6 5.7855 1.1565 6.5195 14 7 5.6092 0.5683 7.6825 15 14 7.4769 1.7870 6.0388 16 1 7.4102 2.4038 4.6896 17 1 7.9258 2.8018 7.0257 18 1 8.4394 0.6564 6.0187 19 6 2.2282 2.3899 4.6092 20 6 1.1264 2.5293 3.5534 21 6 1.8863 2.0731 -1.3640 22 6 3.2808 2.6587 -1.0862 23 6 3.5217 1.4455 -0.1724 24 1 -0.3634 0.4270 0.9347 25 1 -0.3633 0.5960 -0.8373 26 1 -0.3633 -1.0231 -0.0976 27 1 1.8306 -0.5261 -0.7813 28 1 0.9394 -0.2615 2.9714 29 1 2.2091 -0.1640 1.7229 30 1 3.8220 0.6895 3.3619 31 1 3.0987 -0.8055 4.0038 32 1 2.9901 1.3616 6.9007 33 1 3.4244 -0.2578 6.3028 34 1 6.3572 0.4622 8.2907 35 1 3.1550 2.8171 4.2263 36 1 1.9318 2.9170 5.5162 37 1 1.0491 3.5704 3.2401 38 1 0.1738 2.2003 3.9686 39 1 1.8621 1.3845 -2.2086 40 1 1.0978 2.8246 -1.4066 41 1 3.2571 3.6090 -0.5530 42 1 3.9279 2.6801 -1.9631 43 1 4.0536 1.6901 0.7470 44 1 3.9447 0.5851 -0.6911 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000311041018.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:30 Heat of formation + Delta-G solvation = 9.295655 kcal Electronic energy + Delta-G solvation = -23861.748450 eV Core-core repulsion = 20622.202992 eV Total energy + Delta-G solvation = -3239.545458 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.97079 -38.33105 -36.99914 -34.72766 -33.79750 -32.25683 -30.54279 -28.23760 -26.66311 -25.74653 -25.35491 -24.01270 -22.95200 -22.23233 -21.14548 -19.70126 -18.04104 -17.07815 -16.41018 -16.12292 -15.81512 -14.92617 -14.84882 -14.67236 -14.44185 -14.27065 -13.98199 -13.61284 -13.35878 -13.15127 -12.72254 -12.48598 -12.21222 -12.05989 -11.91979 -11.72479 -11.15621 -11.14076 -11.05406 -10.97709 -10.85855 -10.62526 -10.55257 -10.50283 -10.20038 -9.87365 -9.66559 -9.57583 -8.48404 -8.41954 -8.30350 -7.19766 -6.05004 -4.14271 2.70175 3.22521 3.24492 3.32972 3.36378 3.83857 4.37442 4.38634 4.53077 4.54028 4.73965 5.04035 5.18317 5.20101 5.25588 5.33097 5.45175 5.57052 5.62146 5.65105 5.76344 5.80415 5.83919 5.90270 5.91667 5.93631 6.04207 6.13330 6.18582 6.36822 6.55326 6.58334 6.67819 6.81139 6.88998 7.05310 7.25577 7.50144 7.71739 7.87858 8.02375 8.25345 8.26865 8.37181 8.96180 9.52922 10.99954 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020944 B = 0.005154 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.570654 B = 5431.154713 C = 5927.423065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.665 5.665 3 C 0.071 3.929 4 C 0.543 3.457 5 O -0.553 6.553 6 N -0.590 5.590 7 C 0.092 3.908 8 C 0.050 3.950 9 N -0.542 5.542 10 C 0.187 3.813 11 C -0.548 4.548 12 H 0.056 0.944 13 C 0.066 3.934 14 N -0.890 5.890 15 Si 0.887 3.113 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.283 1.283 19 C 0.051 3.949 20 C 0.113 3.887 21 C -0.152 4.152 22 C -0.137 4.137 23 C -0.121 4.121 24 H 0.067 0.933 25 H 0.027 0.973 26 H 0.072 0.928 27 H 0.347 0.653 28 H 0.061 0.939 29 H 0.129 0.871 30 H 0.040 0.960 31 H 0.075 0.925 32 H 0.027 0.973 33 H 0.036 0.964 34 H 0.262 0.738 35 H 0.040 0.960 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.873 -1.560 -16.752 18.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.296 5.296 3 C -0.023 4.023 4 C 0.329 3.671 5 O -0.431 6.431 6 N -0.321 5.321 7 C -0.030 4.030 8 C -0.079 4.079 9 N -0.266 5.266 10 C 0.061 3.939 11 C -0.587 4.587 12 H 0.074 0.926 13 C -0.137 4.137 14 N -0.529 5.529 15 Si 0.715 3.285 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.078 4.078 20 C -0.009 4.009 21 C -0.192 4.192 22 C -0.175 4.175 23 C -0.159 4.159 24 H 0.086 0.914 25 H 0.046 0.954 26 H 0.091 0.909 27 H 0.167 0.833 28 H 0.080 0.920 29 H 0.146 0.854 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.045 0.955 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.105 0.895 42 H 0.090 0.910 43 H 0.097 0.903 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.431 -1.313 -15.831 17.984 hybrid contribution 1.706 0.836 -1.062 2.176 sum -6.725 -0.476 -16.893 18.188 Atomic orbital electron populations 1.22240 0.87204 1.01873 1.01433 1.60539 1.08438 1.11771 1.48885 1.22466 0.97369 0.88475 0.94003 1.19556 0.77934 0.86252 0.83330 1.90656 1.47878 1.20376 1.84166 1.48095 1.66033 1.12541 1.05463 1.22773 0.98654 0.80191 1.01429 1.22363 0.95490 0.99317 0.90752 1.62490 1.48748 1.08468 1.06868 1.19768 0.88378 0.97773 0.87963 1.21769 0.94971 1.38917 1.03076 0.92612 1.24951 0.98913 0.94956 0.94882 1.69945 1.31590 1.42835 1.08514 0.86613 0.84578 0.78704 0.78574 1.19914 1.20932 1.20899 1.22220 0.96671 0.91657 0.97244 1.21841 0.98387 0.95267 0.85447 1.23447 0.99231 1.00729 0.95792 1.22746 0.96488 0.98436 0.99865 1.23055 0.92804 0.99054 1.01034 0.91373 0.95422 0.90914 0.83342 0.92019 0.85354 0.94170 0.90704 0.95467 0.94614 0.92847 0.94224 0.90582 0.89956 0.91491 0.89818 0.90176 0.89532 0.90992 0.90297 0.88744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.93 60.06 0.60 0.80 16 2 N -0.67 -6.53 3.83 -107.52 -0.41 -6.94 16 3 C 0.07 0.86 0.39 -131.94 -0.05 0.81 16 4 C 0.54 8.61 5.47 -10.99 -0.06 8.55 16 5 O -0.55 -10.29 15.18 5.56 0.08 -10.20 16 6 N -0.59 -9.53 2.86 -172.19 -0.49 -10.02 16 7 C 0.09 1.41 5.41 -3.36 -0.02 1.39 16 8 C 0.05 0.95 5.17 -3.47 -0.02 0.93 16 9 N -0.54 -11.38 4.83 -235.47 -1.14 -12.52 16 10 C 0.19 4.73 5.11 -4.98 -0.03 4.70 16 11 C -0.55 -14.87 7.75 -34.44 -0.27 -15.14 16 12 H 0.06 1.53 5.88 -52.49 -0.31 1.22 16 13 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 14 N -0.89 -25.93 13.29 55.43 0.74 -25.19 16 15 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 16 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 C 0.05 1.01 5.24 -3.71 -0.02 0.99 16 20 C 0.11 1.91 6.57 -3.60 -0.02 1.89 16 21 C -0.15 -1.64 6.67 -25.92 -0.17 -1.81 16 22 C -0.14 -1.53 7.72 -25.92 -0.20 -1.73 16 23 C -0.12 -1.39 7.36 -25.91 -0.19 -1.58 16 24 H 0.07 0.80 6.87 -51.93 -0.36 0.45 16 25 H 0.03 0.26 7.72 -51.93 -0.40 -0.14 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.35 2.60 8.75 -39.30 -0.34 2.26 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.13 1.75 4.57 -51.93 -0.24 1.51 16 30 H 0.04 0.84 6.80 -51.93 -0.35 0.49 16 31 H 0.07 1.42 8.11 -51.93 -0.42 1.00 16 32 H 0.03 0.74 8.07 -51.93 -0.42 0.32 16 33 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.04 0.86 6.92 -51.93 -0.36 0.50 16 36 H 0.08 1.46 8.06 -51.92 -0.42 1.05 16 37 H 0.08 1.40 7.12 -51.93 -0.37 1.03 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.08 0.70 8.13 -51.93 -0.42 0.28 16 40 H 0.08 1.01 7.46 -51.93 -0.39 0.62 16 41 H 0.09 1.14 8.00 -51.93 -0.42 0.73 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 1.08 8.09 -51.93 -0.42 0.66 16 44 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 336.78 15.07 5.08 5.08 Total: -1.00 -30.43 336.78 -9.02 -39.44 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -7.30 Total: 2.50 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -0.55 Total: 1.53 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -1.30 Total: -54.67 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.08 Total: -10.20 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.43 -9.02 -39.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000311041018.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.740 kcal (2) G-P(sol) polarization free energy of solvation -30.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds