Wall clock time and date at job start Tue Mar 31 2020 05:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 114.00271 * 2 1 4 4 C 1.53004 * 109.47349 * 179.97438 * 3 2 1 5 5 N 1.46897 * 109.47038 * 65.10853 * 4 3 2 6 6 C 1.46905 * 110.99939 * 199.83299 * 5 4 3 7 7 C 1.50702 * 109.47167 * 66.04364 * 6 5 4 8 8 H 1.08001 * 119.99666 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99948 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99618 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99984 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47096 * 89.99854 * 11 9 7 13 13 H 1.48497 * 109.47154 * 210.00002 * 11 9 7 14 14 H 1.48498 * 109.47002 * 330.00008 * 11 9 7 15 15 C 1.46892 * 111.00434 * 75.87683 * 5 4 3 16 16 C 1.52995 * 109.47658 * 199.68650 * 15 5 4 17 17 C 1.52999 * 109.47677 * 174.84655 * 16 15 5 18 18 C 1.50695 * 109.47321 * 180.02562 * 17 16 15 19 19 C 1.34666 * 126.59156 * 84.96158 * 18 17 16 20 20 N 1.34135 * 108.02060 * 180.02562 * 19 18 17 21 21 C 1.30498 * 109.25368 * 359.72238 * 20 19 18 22 22 N 1.35047 * 108.70346 * 0.44548 * 21 20 19 23 23 C 1.46496 * 126.40039 * 179.82637 * 22 21 20 24 24 H 1.09002 * 109.47184 * 60.00184 * 1 2 3 25 25 H 1.09003 * 109.47223 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47128 * 299.99847 * 1 2 3 27 27 H 1.09002 * 109.47027 * 59.99770 * 3 2 1 28 28 H 1.09001 * 109.47184 * 299.99928 * 3 2 1 29 29 H 1.09002 * 109.46820 * 305.11024 * 4 3 2 30 30 H 1.08996 * 109.47281 * 185.10879 * 4 3 2 31 31 H 1.08997 * 109.47346 * 186.04656 * 6 5 4 32 32 H 1.09001 * 109.46822 * 306.04717 * 6 5 4 33 33 H 0.96999 * 119.99479 * 180.02562 * 10 9 7 34 34 H 1.09005 * 109.47429 * 79.68730 * 15 5 4 35 35 H 1.09009 * 109.47048 * 319.68992 * 15 5 4 36 36 H 1.09008 * 109.47000 * 54.85093 * 16 15 5 37 37 H 1.08999 * 109.47113 * 294.85453 * 16 15 5 38 38 H 1.09003 * 109.46748 * 59.99744 * 17 16 15 39 39 H 1.09007 * 109.46942 * 300.00258 * 17 16 15 40 40 H 1.08000 * 125.99300 * 0.03298 * 19 18 17 41 41 H 1.07995 * 125.65091 * 180.28801 * 21 20 19 42 42 H 1.09002 * 109.46963 * 269.68450 * 23 22 21 43 43 H 1.08996 * 109.47302 * 149.68738 * 23 22 21 44 44 H 1.08991 * 109.47389 * 29.68358 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9781 0.5645 -1.2554 6 6 5.3300 0.0061 -1.1190 7 6 5.3033 -1.1415 -0.1426 8 1 4.3748 -1.4276 0.3292 9 6 6.4642 -1.8261 0.1485 10 7 7.5948 -1.4773 -0.4256 11 14 6.4313 -3.2481 1.3594 12 1 6.1620 -4.5133 0.6299 13 1 7.7439 -3.3431 2.0472 14 1 5.3617 -3.0185 2.3636 15 6 3.9141 1.5229 -2.3668 16 6 3.8963 0.7634 -3.6948 17 6 3.7004 1.7526 -4.8455 18 6 3.6823 1.0044 -6.1535 19 6 2.6175 0.4074 -6.7222 20 7 3.0192 -0.1460 -7.8761 21 6 4.2912 0.0905 -8.0469 22 7 4.7452 0.8005 -6.9917 23 6 6.1174 1.2702 -6.7855 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.6886 1.8463 0.8900 28 1 1.6887 1.8463 -0.8900 29 1 3.8506 0.5668 0.8416 30 1 3.9785 2.1762 0.0922 31 1 5.6754 -0.3505 -2.0894 32 1 6.0069 0.7783 -0.7536 33 1 8.4114 -1.9592 -0.2211 34 1 4.7858 2.1765 -2.3337 35 1 3.0075 2.1217 -2.2785 36 1 3.0775 0.0439 -3.6910 37 1 4.8419 0.2371 -3.8250 38 1 4.5191 2.4721 -4.8494 39 1 2.7547 2.2788 -4.7152 40 1 1.6157 0.3792 -6.3198 41 1 4.8833 -0.2307 -8.8910 42 1 6.6816 0.5150 -6.2384 43 1 6.1019 2.1976 -6.2131 44 1 6.5898 1.4475 -7.7517 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000314342345.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:26 Heat of formation + Delta-G solvation = 13.469566 kcal Electronic energy + Delta-G solvation = -22335.869903 eV Core-core repulsion = 19096.505440 eV Total energy + Delta-G solvation = -3239.364463 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.97468 -37.91316 -36.50105 -34.22266 -33.61811 -32.43558 -29.86076 -28.83143 -26.97947 -26.71498 -25.84610 -24.43379 -22.34259 -21.61178 -21.30613 -19.73995 -19.58883 -16.96247 -16.48334 -15.99768 -15.67780 -15.55419 -15.04158 -14.74556 -14.50757 -14.27238 -13.82237 -13.65025 -13.43201 -12.99134 -12.89675 -12.83509 -12.55440 -12.05314 -11.82175 -11.77152 -11.69616 -11.18417 -11.13698 -10.81025 -10.70324 -10.58758 -10.34912 -10.06179 -9.82816 -9.62692 -9.48629 -9.24438 -9.06746 -8.38405 -8.19072 -7.16890 -5.98587 -3.97862 2.13276 2.85153 3.27882 3.36408 3.41984 3.47205 4.27779 4.47489 4.65853 4.69942 4.77864 4.94399 5.04261 5.12468 5.36027 5.37335 5.42998 5.47760 5.50326 5.59228 5.66631 5.72638 5.76953 5.83260 5.87002 5.89838 5.96726 6.02388 6.15562 6.23742 6.38964 6.63300 6.72124 6.79026 6.86748 7.25961 7.30880 7.34967 7.67617 7.90042 8.15643 8.16727 8.24968 8.62043 9.12354 9.66243 11.12531 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.011706 B = 0.004850 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.383835 B = 5771.858014 C = 7272.140427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.363 6.363 3 C 0.071 3.929 4 C 0.060 3.940 5 N -0.526 5.526 6 C 0.195 3.805 7 C -0.501 4.501 8 H 0.068 0.932 9 C 0.054 3.946 10 N -0.903 5.903 11 Si 0.896 3.104 12 H -0.281 1.281 13 H -0.289 1.289 14 H -0.273 1.273 15 C 0.056 3.944 16 C -0.104 4.104 17 C -0.043 4.043 18 C -0.010 4.010 19 C -0.031 4.031 20 N -0.496 5.496 21 C 0.170 3.830 22 N -0.458 5.458 23 C 0.070 3.930 24 H 0.033 0.967 25 H 0.080 0.920 26 H 0.031 0.969 27 H 0.038 0.962 28 H 0.040 0.960 29 H 0.095 0.905 30 H 0.034 0.966 31 H 0.031 0.969 32 H -0.013 1.013 33 H 0.259 0.741 34 H 0.022 0.978 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.167 0.833 41 H 0.201 0.799 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.018 9.580 -8.708 14.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C -0.007 4.007 4 C -0.069 4.069 5 N -0.251 5.251 6 C 0.070 3.930 7 C -0.540 4.540 8 H 0.086 0.914 9 C -0.147 4.147 10 N -0.543 5.543 11 Si 0.724 3.276 12 H -0.207 1.207 13 H -0.215 1.215 14 H -0.198 1.198 15 C -0.073 4.073 16 C -0.142 4.142 17 C -0.082 4.082 18 C -0.124 4.124 19 C -0.179 4.179 20 N -0.214 5.214 21 C -0.112 4.112 22 N -0.142 5.142 23 C -0.073 4.073 24 H 0.052 0.948 25 H 0.098 0.902 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.113 0.887 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.005 0.995 33 H 0.069 0.931 34 H 0.040 0.960 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.184 0.816 41 H 0.218 0.782 42 H 0.100 0.900 43 H 0.104 0.896 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.373 8.579 -9.334 14.666 hybrid contribution 1.125 0.517 1.280 1.781 sum -6.248 9.096 -8.054 13.662 Atomic orbital electron populations 1.22667 0.82944 1.02131 0.98870 1.88130 1.17687 1.27332 1.94990 1.22618 0.95078 0.84704 0.98276 1.22016 0.91637 0.97599 0.95618 1.62016 1.29565 1.31493 1.01982 1.19738 0.81961 0.93915 0.97425 1.21255 0.94472 1.14325 1.23942 0.91401 1.24975 0.95448 0.97611 0.96645 1.69961 0.99108 1.41361 1.43905 0.86521 0.77059 0.82733 0.81263 1.20700 1.21500 1.19774 1.22044 0.98940 0.93943 0.92331 1.21505 1.03346 0.97621 0.91726 1.20086 1.02728 0.96804 0.88558 1.21348 0.87841 1.07083 0.96173 1.22016 0.99075 1.02802 0.93980 1.70228 1.10014 1.22598 1.18554 1.24830 0.92398 0.99939 0.94037 1.45300 1.09319 1.41624 1.17936 1.22057 0.80017 1.01615 1.03580 0.94800 0.90169 0.95090 0.94367 0.94229 0.88662 0.94845 0.95135 0.99509 0.93127 0.96025 0.92493 0.90720 0.91822 0.91716 0.89897 0.81585 0.78207 0.90001 0.89625 0.89633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.53 16 2 O -0.36 -6.65 10.65 -35.23 -0.38 -7.03 16 3 C 0.07 1.14 6.12 37.16 0.23 1.36 16 4 C 0.06 1.15 5.17 -3.82 -0.02 1.13 16 5 N -0.53 -11.16 4.31 -236.07 -1.02 -12.18 16 6 C 0.19 5.01 4.55 -4.97 -0.02 4.98 16 7 C -0.50 -14.19 8.23 -34.44 -0.28 -14.48 16 8 H 0.07 1.96 7.31 -52.49 -0.38 1.57 16 9 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 10 N -0.90 -26.82 13.29 55.43 0.74 -26.09 16 11 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 15 C 0.06 0.96 4.81 -3.83 -0.02 0.94 16 16 C -0.10 -1.67 5.23 -26.73 -0.14 -1.81 16 17 C -0.04 -0.54 5.55 -27.89 -0.15 -0.69 16 18 C -0.01 -0.13 6.21 -81.60 -0.51 -0.64 16 19 C -0.03 -0.46 11.79 -17.81 -0.21 -0.67 16 20 N -0.50 -7.74 11.25 -14.66 -0.16 -7.90 16 21 C 0.17 2.16 12.56 -90.37 -1.14 1.03 16 22 N -0.46 -5.70 3.15 -121.37 -0.38 -6.08 16 23 C 0.07 0.62 11.00 59.84 0.66 1.28 16 24 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.04 0.58 6.67 -51.93 -0.35 0.24 16 29 H 0.10 2.08 6.58 -51.93 -0.34 1.74 16 30 H 0.03 0.59 8.00 -51.93 -0.42 0.17 16 31 H 0.03 0.84 6.72 -51.93 -0.35 0.49 16 32 H -0.01 -0.35 8.12 -51.93 -0.42 -0.77 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.02 0.37 8.00 -51.93 -0.42 -0.04 16 35 H 0.06 0.85 6.45 -51.92 -0.34 0.51 16 36 H 0.07 1.32 8.14 -51.92 -0.42 0.89 16 37 H 0.06 1.18 6.96 -51.93 -0.36 0.82 16 38 H 0.06 0.74 7.10 -51.93 -0.37 0.37 16 39 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.17 2.18 8.06 -52.49 -0.42 1.76 16 41 H 0.20 1.74 8.06 -52.49 -0.42 1.32 16 42 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.09 0.70 7.12 -51.93 -0.37 0.33 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 359.76 15.07 5.42 5.42 Total: -1.00 -33.98 359.76 -8.86 -42.84 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -7.47 Total: -1.42 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -0.59 Total: -4.61 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: -0.83 Total: -52.25 kcal Atomic # 8 Polarization: -6.65 SS G_CDS: -0.38 Total: -7.03 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.98 -8.86 -42.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000314342345.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.310 kcal (2) G-P(sol) polarization free energy of solvation -33.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds