Wall clock time and date at job start Tue Mar 31 2020 05:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 114.00271 * 2 1 4 4 C 1.53004 * 109.47349 * 179.97438 * 3 2 1 5 5 N 1.46897 * 109.47038 * 65.10853 * 4 3 2 6 6 C 1.46905 * 110.99939 * 199.83299 * 5 4 3 7 7 C 1.50702 * 109.47167 * 66.04364 * 6 5 4 8 8 H 1.08001 * 119.99666 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99948 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99618 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99984 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47096 * 89.99854 * 11 9 7 13 13 H 1.48497 * 109.47154 * 210.00002 * 11 9 7 14 14 H 1.48498 * 109.47002 * 330.00008 * 11 9 7 15 15 C 1.46892 * 111.00434 * 75.87683 * 5 4 3 16 16 C 1.52995 * 109.47658 * 199.68650 * 15 5 4 17 17 C 1.52999 * 109.47677 * 174.84655 * 16 15 5 18 18 C 1.50695 * 109.47321 * 180.02562 * 17 16 15 19 19 C 1.34666 * 126.59156 * 84.96158 * 18 17 16 20 20 N 1.34135 * 108.02060 * 180.02562 * 19 18 17 21 21 C 1.30498 * 109.25368 * 359.72238 * 20 19 18 22 22 N 1.35047 * 108.70346 * 0.44548 * 21 20 19 23 23 C 1.46496 * 126.40039 * 179.82637 * 22 21 20 24 24 H 1.09002 * 109.47184 * 60.00184 * 1 2 3 25 25 H 1.09003 * 109.47223 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47128 * 299.99847 * 1 2 3 27 27 H 1.09002 * 109.47027 * 59.99770 * 3 2 1 28 28 H 1.09001 * 109.47184 * 299.99928 * 3 2 1 29 29 H 1.09002 * 109.46820 * 305.11024 * 4 3 2 30 30 H 1.08996 * 109.47281 * 185.10879 * 4 3 2 31 31 H 1.08997 * 109.47346 * 186.04656 * 6 5 4 32 32 H 1.09001 * 109.46822 * 306.04717 * 6 5 4 33 33 H 0.96999 * 119.99479 * 180.02562 * 10 9 7 34 34 H 1.09005 * 109.47429 * 79.68730 * 15 5 4 35 35 H 1.09009 * 109.47048 * 319.68992 * 15 5 4 36 36 H 1.09008 * 109.47000 * 54.85093 * 16 15 5 37 37 H 1.08999 * 109.47113 * 294.85453 * 16 15 5 38 38 H 1.09003 * 109.46748 * 59.99744 * 17 16 15 39 39 H 1.09007 * 109.46942 * 300.00258 * 17 16 15 40 40 H 1.08000 * 125.99300 * 0.03298 * 19 18 17 41 41 H 1.07995 * 125.65091 * 180.28801 * 21 20 19 42 42 H 1.09002 * 109.46963 * 269.68450 * 23 22 21 43 43 H 1.08996 * 109.47302 * 149.68738 * 23 22 21 44 44 H 1.08991 * 109.47389 * 29.68358 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9781 0.5645 -1.2554 6 6 5.3300 0.0061 -1.1190 7 6 5.3033 -1.1415 -0.1426 8 1 4.3748 -1.4276 0.3292 9 6 6.4642 -1.8261 0.1485 10 7 7.5948 -1.4773 -0.4256 11 14 6.4313 -3.2481 1.3594 12 1 6.1620 -4.5133 0.6299 13 1 7.7439 -3.3431 2.0472 14 1 5.3617 -3.0185 2.3636 15 6 3.9141 1.5229 -2.3668 16 6 3.8963 0.7634 -3.6948 17 6 3.7004 1.7526 -4.8455 18 6 3.6823 1.0044 -6.1535 19 6 2.6175 0.4074 -6.7222 20 7 3.0192 -0.1460 -7.8761 21 6 4.2912 0.0905 -8.0469 22 7 4.7452 0.8005 -6.9917 23 6 6.1174 1.2702 -6.7855 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.6886 1.8463 0.8900 28 1 1.6887 1.8463 -0.8900 29 1 3.8506 0.5668 0.8416 30 1 3.9785 2.1762 0.0922 31 1 5.6754 -0.3505 -2.0894 32 1 6.0069 0.7783 -0.7536 33 1 8.4114 -1.9592 -0.2211 34 1 4.7858 2.1765 -2.3337 35 1 3.0075 2.1217 -2.2785 36 1 3.0775 0.0439 -3.6910 37 1 4.8419 0.2371 -3.8250 38 1 4.5191 2.4721 -4.8494 39 1 2.7547 2.2788 -4.7152 40 1 1.6157 0.3792 -6.3198 41 1 4.8833 -0.2307 -8.8910 42 1 6.6816 0.5150 -6.2384 43 1 6.1019 2.1976 -6.2131 44 1 6.5898 1.4475 -7.7517 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000314342345.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:26 Heat of formation + Delta-G solvation = -8.491593 kcal Electronic energy + Delta-G solvation = -22336.822211 eV Core-core repulsion = 19096.505440 eV Total energy + Delta-G solvation = -3240.316771 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.97168 -39.35573 -37.90939 -35.47248 -34.80402 -34.35436 -31.14930 -30.40645 -28.37312 -27.77909 -26.98080 -25.90103 -24.17303 -22.92541 -22.31860 -21.24444 -20.68584 -18.57319 -17.88278 -17.30486 -17.10745 -16.62775 -16.44267 -16.14009 -16.04467 -15.52573 -15.25467 -14.91647 -14.58378 -14.44470 -14.01451 -13.82136 -13.80863 -13.46104 -13.37648 -13.12828 -12.92976 -12.76659 -12.63550 -12.45441 -12.28830 -12.22278 -11.87943 -11.73051 -11.32081 -11.16811 -10.89375 -10.58303 -10.47254 -10.38311 -9.24947 -8.87528 -8.18747 -6.26045 1.12320 1.39191 1.40823 1.52127 1.97828 2.21715 2.41436 3.08576 3.13827 3.31169 3.76190 3.92272 3.97847 4.02133 4.19191 4.34026 4.34691 4.38795 4.44365 4.49242 4.56875 4.63654 4.65492 4.68313 4.71721 4.76112 4.78768 4.84651 4.90564 4.93528 5.05647 5.17248 5.28522 5.34008 5.42147 5.53663 5.70848 5.83281 6.12812 6.34360 6.39192 6.53309 6.78187 6.91611 7.14434 7.42898 8.91993 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.011706 B = 0.004850 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.383835 B = 5771.858014 C = 7272.140427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.407 6.407 3 C 0.077 3.923 4 C 0.057 3.943 5 N -0.539 5.539 6 C 0.214 3.786 7 C -0.516 4.516 8 H 0.057 0.943 9 C 0.003 3.997 10 N -0.934 5.934 11 Si 0.962 3.038 12 H -0.277 1.277 13 H -0.280 1.280 14 H -0.267 1.267 15 C 0.057 3.943 16 C -0.091 4.091 17 C -0.029 4.029 18 C -0.022 4.022 19 C -0.053 4.053 20 N -0.536 5.536 21 C 0.173 3.827 22 N -0.462 5.462 23 C 0.065 3.935 24 H 0.049 0.951 25 H 0.083 0.917 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.004 0.996 32 H -0.039 1.039 33 H 0.263 0.737 34 H 0.023 0.977 35 H 0.090 0.910 36 H 0.055 0.945 37 H 0.029 0.971 38 H 0.080 0.920 39 H 0.105 0.895 40 H 0.173 0.827 41 H 0.237 0.763 42 H 0.071 0.929 43 H 0.093 0.907 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.861 10.608 -8.834 15.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.327 6.327 3 C 0.001 3.999 4 C -0.071 4.071 5 N -0.263 5.263 6 C 0.087 3.913 7 C -0.554 4.554 8 H 0.075 0.925 9 C -0.194 4.194 10 N -0.575 5.575 11 Si 0.787 3.213 12 H -0.203 1.203 13 H -0.205 1.205 14 H -0.191 1.191 15 C -0.071 4.071 16 C -0.129 4.129 17 C -0.068 4.068 18 C -0.138 4.138 19 C -0.200 4.200 20 N -0.255 5.255 21 C -0.109 4.109 22 N -0.144 5.144 23 C -0.077 4.077 24 H 0.067 0.933 25 H 0.102 0.898 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.022 0.978 32 H -0.021 1.021 33 H 0.072 0.928 34 H 0.041 0.959 35 H 0.108 0.892 36 H 0.074 0.926 37 H 0.048 0.952 38 H 0.099 0.901 39 H 0.124 0.876 40 H 0.190 0.810 41 H 0.253 0.747 42 H 0.089 0.911 43 H 0.112 0.888 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.229 9.629 -9.453 15.805 hybrid contribution 1.375 0.209 1.285 1.893 sum -6.854 9.837 -8.169 14.508 Atomic orbital electron populations 1.22850 0.80490 1.03038 1.00563 1.88063 1.20515 1.28690 1.95383 1.22578 0.92350 0.84501 1.00512 1.22055 0.94390 0.97350 0.93315 1.61933 1.26375 1.33825 1.04162 1.19318 0.84082 0.92760 0.95094 1.21495 0.94169 1.15285 1.24495 0.92482 1.25810 0.95050 1.00195 0.98381 1.70068 0.99704 1.42599 1.45153 0.85498 0.77477 0.79295 0.79057 1.20284 1.20489 1.19145 1.22144 1.00486 0.93412 0.91012 1.21333 1.00670 0.97900 0.93031 1.19982 1.04561 0.95851 0.86376 1.21507 0.88187 1.07360 0.96702 1.22291 0.99966 1.03394 0.94359 1.70198 1.11762 1.24110 1.19407 1.25559 0.92033 0.98655 0.94695 1.45552 1.10204 1.41180 1.17495 1.22298 0.78315 1.01432 1.05625 0.93276 0.89831 0.93072 0.91607 0.92224 0.92196 0.93173 0.97774 1.02108 0.92847 0.95877 0.89211 0.92581 0.95240 0.90130 0.87636 0.81002 0.74706 0.91070 0.88794 0.86278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 11.01 113.37 1.25 1.91 16 2 O -0.41 -14.44 10.65 -148.98 -1.59 -16.03 16 3 C 0.08 2.33 6.12 71.98 0.44 2.77 16 4 C 0.06 2.17 5.17 86.31 0.45 2.62 16 5 N -0.54 -23.15 4.31 -900.79 -3.88 -27.02 16 6 C 0.21 11.45 4.55 85.56 0.39 11.84 16 7 C -0.52 -30.15 8.23 25.60 0.21 -29.93 16 8 H 0.06 3.39 7.31 -2.91 -0.02 3.37 16 9 C 0.00 0.19 5.46 84.66 0.46 0.65 16 10 N -0.93 -56.71 13.29 21.45 0.28 -56.42 16 11 Si 0.96 45.83 29.54 68.60 2.03 47.86 16 12 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 13 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 14 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 15 C 0.06 1.91 4.81 86.30 0.41 2.32 16 16 C -0.09 -2.94 5.23 30.59 0.16 -2.78 16 17 C -0.03 -0.68 5.55 29.85 0.17 -0.52 16 18 C -0.02 -0.59 6.21 40.95 0.25 -0.34 16 19 C -0.05 -1.57 11.79 83.52 0.98 -0.58 16 20 N -0.54 -16.54 11.25 -200.31 -2.25 -18.79 16 21 C 0.17 4.18 12.56 180.26 2.26 6.45 16 22 N -0.46 -10.94 3.15 -537.92 -1.70 -12.63 16 23 C 0.06 1.05 11.00 127.77 1.41 2.46 16 24 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.07 1.62 8.14 -2.39 -0.02 1.61 16 28 H 0.06 1.55 6.67 -2.39 -0.02 1.53 16 29 H 0.06 2.69 6.58 -2.39 -0.02 2.67 16 30 H 0.05 1.71 8.00 -2.39 -0.02 1.69 16 31 H 0.00 0.24 6.72 -2.39 -0.02 0.23 16 32 H -0.04 -2.22 8.12 -2.39 -0.02 -2.24 16 33 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 34 H 0.02 0.77 8.00 -2.38 -0.02 0.75 16 35 H 0.09 2.41 6.45 -2.38 -0.02 2.40 16 36 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 37 H 0.03 1.13 6.96 -2.39 -0.02 1.12 16 38 H 0.08 1.66 7.10 -2.39 -0.02 1.65 16 39 H 0.11 2.04 8.14 -2.38 -0.02 2.03 16 40 H 0.17 4.54 8.06 -2.91 -0.02 4.51 16 41 H 0.24 3.55 8.06 -2.91 -0.02 3.53 16 42 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.09 1.37 7.12 -2.39 -0.02 1.35 16 44 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -76.16 359.76 2.70 -73.46 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 0.96 Total: 12.72 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: 8.85 Total: -3.14 kcal Atomic # 7 Polarization: -107.33 SS G_CDS: -7.54 Total: -114.87 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -1.59 Total: -16.03 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -76.16 2.70 -73.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000314342345.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.971 kcal (2) G-P(sol) polarization free energy of solvation -76.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds