Wall clock time and date at job start Tue Mar 31 2020 05:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47131 * 2 1 4 4 C 1.53002 * 109.46969 * 60.00062 * 3 2 1 5 5 C 1.53005 * 109.47056 * 300.00368 * 3 2 1 6 6 C 1.52997 * 109.47131 * 179.97438 * 3 2 1 7 7 C 1.52999 * 109.46991 * 60.00689 * 6 3 2 8 8 C 1.52997 * 109.46991 * 180.02562 * 7 6 3 9 9 C 1.52996 * 109.47131 * 299.99311 * 8 7 6 10 10 C 1.52997 * 109.47131 * 179.97438 * 9 8 7 11 11 C 1.50708 * 109.47329 * 65.00103 * 10 9 8 12 12 O 1.21294 * 119.99366 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00007 * 179.97438 * 11 10 9 14 14 C 1.37105 * 119.99778 * 180.02562 * 13 11 10 15 15 H 1.07999 * 119.99472 * 359.97438 * 14 13 11 16 16 C 1.38945 * 119.99749 * 180.02562 * 14 13 11 17 17 N 1.31408 * 120.00516 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99665 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47181 * 89.99697 * 18 16 14 20 20 H 1.48501 * 109.47006 * 209.99892 * 18 16 14 21 21 H 1.48509 * 109.47245 * 329.99747 * 18 16 14 22 22 C 1.53002 * 109.46972 * 60.00459 * 9 8 7 23 23 C 1.52997 * 109.46817 * 299.99733 * 22 9 8 24 24 H 1.08998 * 109.47533 * 299.99495 * 1 2 3 25 25 H 1.09001 * 109.47502 * 60.00153 * 1 2 3 26 26 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46832 * 240.00325 * 2 1 3 28 28 H 1.08992 * 109.47303 * 120.00621 * 2 1 3 29 29 H 1.09002 * 109.47067 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.47312 * 299.99939 * 4 3 2 31 31 H 1.09004 * 109.46930 * 59.99996 * 4 3 2 32 32 H 1.08998 * 109.47061 * 299.99160 * 5 3 2 33 33 H 1.09000 * 109.47360 * 59.99978 * 5 3 2 34 34 H 1.09002 * 109.46935 * 179.97438 * 5 3 2 35 35 H 1.08993 * 109.47194 * 299.99846 * 6 3 2 36 36 H 1.09002 * 109.46719 * 299.99711 * 7 6 3 37 37 H 1.08993 * 109.47839 * 59.99553 * 7 6 3 38 38 H 1.09001 * 109.47289 * 179.97438 * 8 7 6 39 39 H 1.09000 * 109.47611 * 59.99933 * 8 7 6 40 40 H 1.08996 * 109.47452 * 300.00000 * 9 8 7 41 41 H 1.09000 * 109.47325 * 185.00280 * 10 9 8 42 42 H 1.09006 * 109.47500 * 305.00368 * 10 9 8 43 43 H 0.96993 * 120.00257 * 359.97438 * 13 11 10 44 44 H 0.96998 * 120.00556 * 180.02562 * 17 16 14 45 45 H 1.09002 * 109.47070 * 179.97438 * 22 9 8 46 46 H 1.08996 * 109.47407 * 59.99513 * 22 9 8 47 47 H 1.09001 * 109.47502 * 300.00518 * 23 22 9 48 48 H 1.09001 * 109.47289 * 180.02562 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2493 5 6 1.5299 2.1637 -1.2492 6 6 3.5699 1.4425 0.0006 7 6 4.0804 0.7212 -1.2484 8 6 5.6104 0.7206 -1.2474 9 6 6.1209 2.1629 -1.2471 10 6 7.6509 2.1623 -1.2455 11 6 8.1544 1.5615 -2.5326 12 8 7.3669 1.1725 -3.3691 13 7 9.4797 1.4574 -2.7546 14 6 9.9377 0.9113 -3.9257 15 1 9.2365 0.5642 -4.6702 16 6 11.3040 0.8035 -4.1544 17 7 12.1572 1.2254 -3.2483 18 14 11.9280 0.0587 -5.7498 19 1 12.0944 1.1301 -6.7644 20 1 13.2357 -0.6026 -5.5091 21 1 10.9500 -0.9436 -6.2441 22 6 5.6105 2.8843 0.0019 23 6 4.0805 2.8848 0.0010 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8898 29 1 1.8937 3.1912 1.2495 30 1 0.4399 2.1637 1.2493 31 1 1.8933 1.6498 2.1393 32 1 1.8933 1.6500 -2.1392 33 1 0.4399 2.1638 -1.2492 34 1 1.8928 3.1916 -1.2490 35 1 3.9329 0.9288 0.8908 36 1 3.7171 -0.3065 -1.2484 37 1 3.7175 1.2348 -2.1385 38 1 5.9741 0.2064 -2.1370 39 1 5.9731 0.2066 -0.3573 40 1 5.7584 2.6769 -2.1372 41 1 8.0145 3.1860 -1.1556 42 1 8.0132 1.5728 -0.4032 43 1 10.1094 1.7695 -2.0861 44 1 13.1110 1.1505 -3.4081 45 1 5.9745 3.9117 0.0024 46 1 5.9730 2.3703 0.8921 47 1 3.7178 3.3988 -0.8892 48 1 3.7167 3.3991 0.8905 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330402685.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:56 Heat of formation + Delta-G solvation = -90.904638 kcal Electronic energy + Delta-G solvation = -23055.620914 eV Core-core repulsion = 19915.270789 eV Total energy + Delta-G solvation = -3140.350125 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.94861 -38.27638 -36.21666 -33.88817 -31.97307 -31.18912 -30.68409 -29.53288 -27.41831 -26.81746 -24.86264 -23.93097 -22.05563 -21.38748 -19.57836 -18.91446 -18.16434 -17.74616 -15.78673 -15.64791 -14.95647 -14.74932 -14.51069 -14.32965 -14.08270 -13.94436 -13.65199 -13.30076 -13.18337 -12.74633 -12.36791 -12.25959 -12.13576 -11.99607 -11.75863 -11.56151 -11.54928 -11.31533 -11.15510 -11.02767 -10.88953 -10.67400 -10.59170 -10.43614 -10.36567 -10.25964 -10.17662 -9.99611 -9.68325 -9.53758 -9.37577 -8.21731 -7.90911 -6.37952 -3.78556 3.19756 3.27953 3.33976 3.98671 4.20704 4.57314 4.65995 4.74763 4.91825 5.04006 5.15549 5.19979 5.29473 5.31202 5.34889 5.41721 5.53520 5.55945 5.63166 5.63657 5.73210 5.78784 5.82109 5.84349 5.85608 5.88563 5.93757 5.99654 6.03322 6.10151 6.14092 6.16355 6.22108 6.23550 6.29466 6.40050 6.45834 6.47473 6.59410 6.64561 6.68669 6.94774 7.05828 7.58551 8.10922 8.66369 9.22135 9.60814 10.12651 10.79963 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.035911 B = 0.003143 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.524173 B = 8906.453659 C = 9351.953242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C -0.059 4.059 4 C -0.144 4.144 5 C -0.147 4.147 6 C -0.075 4.075 7 C -0.112 4.112 8 C -0.118 4.118 9 C -0.062 4.062 10 C -0.129 4.129 11 C 0.442 3.558 12 O -0.592 6.592 13 N -0.566 5.566 14 C -0.299 4.299 15 H 0.102 0.898 16 C 0.021 3.979 17 N -0.903 5.903 18 Si 0.928 3.072 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.270 1.270 22 C -0.116 4.116 23 C -0.113 4.113 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.048 0.952 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.089 0.911 39 H 0.047 0.953 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.057 0.943 46 H 0.057 0.943 47 H 0.063 0.937 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.272 2.058 10.083 20.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.059 4.059 4 C -0.201 4.201 5 C -0.204 4.204 6 C -0.093 4.093 7 C -0.150 4.150 8 C -0.155 4.155 9 C -0.081 4.081 10 C -0.169 4.169 11 C 0.229 3.771 12 O -0.478 6.478 13 N -0.202 5.202 14 C -0.429 4.429 15 H 0.120 0.880 16 C -0.180 4.180 17 N -0.545 5.545 18 Si 0.756 3.244 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.194 1.194 22 C -0.153 4.153 23 C -0.151 4.151 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.107 0.893 39 H 0.066 0.934 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.082 0.918 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.577 1.787 9.519 20.950 hybrid contribution 0.951 -0.143 -0.293 1.005 sum -17.626 1.644 9.226 19.963 Atomic orbital electron populations 1.21896 0.96380 1.01146 1.01820 1.21628 0.95423 0.96202 1.02102 1.20550 0.95094 0.94952 0.95351 1.21974 1.00588 1.00380 0.97171 1.22031 1.00323 1.00476 0.97577 1.21185 0.93081 0.96275 0.98783 1.21660 0.96293 0.99637 0.97381 1.21690 0.94323 0.96635 1.02864 1.20778 0.93240 0.96624 0.97459 1.21581 0.96585 1.01288 0.97493 1.20011 0.83058 0.84913 0.89129 1.90465 1.55168 1.54327 1.47857 1.41951 1.05219 1.54342 1.18678 1.19715 0.91255 1.36157 0.95752 0.87998 1.25252 0.95790 0.97845 0.99128 1.69612 1.02828 1.47395 1.34622 0.85884 0.78068 0.79148 0.81342 1.20455 1.20957 1.19446 1.21633 0.95286 1.00047 0.98364 1.21659 0.95541 0.96395 1.01481 0.92721 0.92533 0.93270 0.91522 0.92304 0.92495 0.92811 0.93002 0.92183 0.92988 0.92500 0.91678 0.92472 0.91861 0.89268 0.93417 0.90869 0.90796 0.90790 0.77479 0.91937 0.92429 0.92392 0.91839 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 9.21 37.16 0.34 -0.91 16 2 C -0.12 -1.08 4.64 -26.73 -0.12 -1.20 16 3 C -0.06 -0.56 0.35 -154.51 -0.05 -0.62 16 4 C -0.14 -1.23 7.77 37.16 0.29 -0.94 16 5 C -0.15 -1.41 7.42 37.16 0.28 -1.14 16 6 C -0.07 -0.83 1.55 -90.62 -0.14 -0.97 16 7 C -0.11 -1.49 4.50 -26.73 -0.12 -1.61 16 8 C -0.12 -1.90 4.94 -26.73 -0.13 -2.03 16 9 C -0.06 -0.99 1.84 -90.62 -0.17 -1.16 16 10 C -0.13 -2.30 5.17 -27.88 -0.14 -2.45 16 11 C 0.44 10.49 7.50 -10.98 -0.08 10.41 16 12 O -0.59 -15.77 13.54 5.55 0.08 -15.69 16 13 N -0.57 -14.63 5.29 -10.96 -0.06 -14.69 16 14 C -0.30 -8.46 9.68 -14.93 -0.14 -8.61 16 15 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 16 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 17 N -0.90 -24.99 13.05 55.50 0.72 -24.27 16 18 Si 0.93 21.32 29.55 -169.99 -5.02 16.30 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 C -0.12 -1.46 5.20 -26.73 -0.14 -1.60 16 23 C -0.11 -1.27 4.50 -26.73 -0.12 -1.39 16 24 H 0.05 0.41 6.43 -51.93 -0.33 0.08 16 25 H 0.06 0.45 6.43 -51.93 -0.33 0.12 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.67 6.43 -51.93 -0.33 0.33 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16 30 H 0.05 0.42 6.43 -51.93 -0.33 0.09 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.63 6.43 -51.93 -0.33 0.29 16 33 H 0.05 0.45 6.43 -51.93 -0.33 0.12 16 34 H 0.06 0.55 6.43 -51.93 -0.33 0.21 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.73 6.43 -51.93 -0.33 0.39 16 37 H 0.06 0.88 6.43 -51.93 -0.33 0.55 16 38 H 0.09 1.78 5.95 -51.93 -0.31 1.47 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.07 1.31 7.96 -51.93 -0.41 0.89 16 41 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.39 9.76 7.90 -40.82 -0.32 9.44 16 44 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.06 0.73 6.43 -51.93 -0.33 0.40 16 48 H 0.06 0.58 6.43 -51.93 -0.33 0.25 16 LS Contribution 350.23 15.07 5.28 5.28 Total: -1.00 -29.53 350.23 -7.93 -37.46 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -8.37 Total: 9.34 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -0.56 Total: -13.74 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.67 Total: -38.95 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: 0.08 Total: -15.69 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.53 -7.93 -37.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330402685.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.444 kcal (2) G-P(sol) polarization free energy of solvation -29.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds