Wall clock time and date at job start Tue Mar 31 2020 06:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47294 * 239.99740 * 2 1 3 5 5 C 1.53000 * 109.47368 * 119.99796 * 2 1 3 6 6 H 1.09002 * 109.47195 * 306.27529 * 5 2 1 7 7 C 1.52999 * 109.47456 * 186.27283 * 5 2 1 8 8 C 1.53001 * 109.47118 * 179.97438 * 7 5 2 9 9 C 1.53004 * 109.46937 * 60.00051 * 8 7 5 10 10 C 1.52999 * 109.47175 * 299.99915 * 9 8 7 11 11 C 1.52991 * 109.47069 * 60.00178 * 10 9 8 12 12 H 1.08994 * 109.47604 * 60.00114 * 11 10 9 13 13 N 1.46509 * 109.47063 * 180.02562 * 11 10 9 14 14 C 1.34776 * 119.99593 * 270.15745 * 13 11 10 15 15 O 1.21280 * 120.00010 * 0.02562 * 14 13 11 16 16 C 1.50699 * 119.99498 * 179.97438 * 14 13 11 17 17 C 1.53003 * 109.46831 * 179.97438 * 16 14 13 18 18 C 1.50703 * 109.47175 * 179.97438 * 17 16 14 19 19 H 1.08000 * 119.99683 * 0.02562 * 18 17 16 20 20 C 1.37870 * 120.00214 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00467 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00001 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47143 * 90.00094 * 22 20 18 24 24 H 1.48496 * 109.47633 * 210.00111 * 22 20 18 25 25 H 1.48501 * 109.47246 * 329.99971 * 22 20 18 26 26 H 1.09003 * 109.47211 * 288.54658 * 1 2 3 27 27 H 1.08996 * 109.47514 * 48.55013 * 1 2 3 28 28 H 1.09002 * 109.47263 * 168.54917 * 1 2 3 29 29 H 1.09001 * 109.47208 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.46576 * 299.99651 * 3 2 1 31 31 H 1.08999 * 109.46853 * 59.99553 * 3 2 1 32 32 H 1.09003 * 109.47220 * 300.00268 * 4 2 1 33 33 H 1.09000 * 109.47034 * 60.00168 * 4 2 1 34 34 H 1.09001 * 109.47484 * 179.97438 * 4 2 1 35 35 H 1.08994 * 109.46814 * 300.00219 * 7 5 2 36 36 H 1.09003 * 109.47226 * 60.00178 * 7 5 2 37 37 H 1.08998 * 109.47070 * 179.97438 * 8 7 5 38 38 H 1.08994 * 109.47594 * 299.99910 * 8 7 5 39 39 H 1.08999 * 109.47067 * 60.00290 * 9 8 7 40 40 H 1.08999 * 109.47082 * 179.97438 * 9 8 7 41 41 H 1.09007 * 109.46825 * 300.00099 * 10 9 8 42 42 H 1.08995 * 109.46910 * 180.02562 * 10 9 8 43 43 H 0.96995 * 120.00130 * 90.15860 * 13 11 10 44 44 H 1.09001 * 109.47209 * 299.99876 * 16 14 13 45 45 H 1.09004 * 109.47232 * 60.00373 * 16 14 13 46 46 H 1.08995 * 109.47160 * 300.00397 * 17 16 14 47 47 H 1.09004 * 109.46875 * 60.00195 * 17 16 14 48 48 H 0.96994 * 120.00496 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2492 6 1 1.5879 -0.2763 2.1357 7 6 3.5619 -0.5862 1.3306 8 6 4.0718 -1.3068 2.5802 9 6 3.6945 -2.7877 2.5045 10 6 2.1726 -2.9227 2.4232 11 6 1.6628 -2.2021 1.1736 12 1 2.1148 -2.6474 0.2874 13 7 0.2054 -2.3309 1.0961 14 6 -0.3451 -3.3758 0.4468 15 8 0.3659 -4.2096 -0.0728 16 6 -1.8441 -3.5086 0.3676 17 6 -2.2034 -4.7712 -0.4184 18 6 -3.7024 -4.9043 -0.4972 19 1 -4.3355 -4.1624 -0.0334 20 6 -4.2656 -5.9733 -1.1613 21 7 -5.5738 -6.0898 -1.2296 22 14 -3.1706 -7.2569 -1.9628 23 1 -2.8777 -8.3369 -0.9867 24 1 -3.8640 -7.8316 -3.1435 25 1 -1.8995 -6.6227 -2.3956 26 1 -0.3634 0.3269 0.9743 27 1 -0.3634 0.6802 -0.7702 28 1 -0.3634 -1.0072 -0.2040 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6766 -1.7490 -1.2492 33 1 1.6767 -0.2075 -2.1392 34 1 3.1300 -0.7209 -1.2494 35 1 4.0139 -1.0310 0.4442 36 1 3.8307 0.4688 1.3849 37 1 5.1560 -1.2110 2.6379 38 1 3.6197 -0.8616 3.4664 39 1 4.1467 -3.2330 1.6183 40 1 4.0581 -3.3012 3.3945 41 1 1.7205 -2.4774 3.3095 42 1 1.9039 -3.9777 2.3697 43 1 -0.3632 -1.6642 1.5120 44 1 -2.2565 -3.5771 1.3742 45 1 -2.2600 -2.6364 -0.1369 46 1 -1.7910 -4.7022 -1.4250 47 1 -1.7875 -5.6436 0.0856 48 1 -5.9701 -6.8416 -1.6971 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330891263.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:46 Heat of formation + Delta-G solvation = -91.060860 kcal Electronic energy + Delta-G solvation = -23740.367438 eV Core-core repulsion = 20600.010539 eV Total energy + Delta-G solvation = -3140.356899 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.71327 -39.72761 -36.66050 -35.57692 -35.20329 -33.31905 -30.90975 -30.26672 -28.26576 -28.10262 -27.73188 -23.92706 -23.74665 -22.46177 -21.25814 -20.87788 -19.58533 -19.03920 -17.48812 -17.22871 -16.77552 -16.24274 -16.10403 -15.51195 -15.12583 -15.08251 -14.85113 -14.62044 -14.53340 -14.24255 -14.01243 -13.75965 -13.47073 -13.34402 -12.93341 -12.88899 -12.73319 -12.53804 -12.31124 -12.25289 -12.09695 -11.97481 -11.94417 -11.78203 -11.64394 -11.55171 -11.40811 -11.21429 -11.05508 -10.95556 -10.78914 -10.59053 -9.68295 -8.32505 -6.35155 1.31459 1.33348 1.48660 1.74529 2.31756 2.33850 3.03208 3.59259 3.69107 3.86833 4.03663 4.07972 4.18096 4.20172 4.35080 4.39768 4.42577 4.48861 4.50496 4.57455 4.63547 4.66478 4.78607 4.83811 4.91861 4.95652 4.98470 4.99903 5.12597 5.13432 5.17312 5.22117 5.23964 5.26528 5.28853 5.33279 5.37098 5.43927 5.46124 5.51896 5.57232 5.61107 5.63002 5.71573 6.22952 6.64975 6.71112 7.30292 7.38350 8.83256 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.023663 B = 0.004156 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.015882 B = 6735.462852 C = 7290.112009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.058 4.058 3 C -0.138 4.138 4 C -0.145 4.145 5 C -0.073 4.073 6 H 0.090 0.910 7 C -0.113 4.113 8 C -0.115 4.115 9 C -0.115 4.115 10 C -0.128 4.128 11 C 0.145 3.855 12 H 0.066 0.934 13 N -0.709 5.709 14 C 0.514 3.486 15 O -0.587 6.587 16 C -0.119 4.119 17 C 0.007 3.993 18 C -0.529 4.529 19 H 0.050 0.950 20 C 0.015 3.985 21 N -0.943 5.943 22 Si 0.937 3.063 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.264 1.264 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.031 0.969 33 H 0.049 0.951 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.051 0.949 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.035 0.965 43 H 0.414 0.586 44 H 0.100 0.900 45 H 0.099 0.901 46 H 0.008 0.992 47 H 0.006 0.994 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.133 17.360 8.385 28.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.058 4.058 3 C -0.195 4.195 4 C -0.202 4.202 5 C -0.092 4.092 6 H 0.108 0.892 7 C -0.150 4.150 8 C -0.152 4.152 9 C -0.153 4.153 10 C -0.167 4.167 11 C 0.041 3.959 12 H 0.084 0.916 13 N -0.362 5.362 14 C 0.302 3.698 15 O -0.467 6.467 16 C -0.158 4.158 17 C -0.031 4.031 18 C -0.567 4.567 19 H 0.069 0.931 20 C -0.182 4.182 21 N -0.584 5.584 22 Si 0.762 3.238 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.188 1.188 26 H 0.089 0.911 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.054 0.946 43 H 0.253 0.747 44 H 0.118 0.882 45 H 0.118 0.882 46 H 0.026 0.974 47 H 0.025 0.975 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 21.491 16.677 7.954 28.342 hybrid contribution -0.514 -0.919 -0.514 1.171 sum 20.978 15.758 7.440 27.271 Atomic orbital electron populations 1.22405 0.95188 1.02283 1.02263 1.20473 0.95285 0.95931 0.94112 1.21910 1.01565 0.93980 1.02035 1.21975 1.01257 0.99290 0.97711 1.21440 0.97281 0.92073 0.98387 0.89210 1.21685 0.93270 1.01819 0.98272 1.21547 1.01349 0.93936 0.98386 1.21491 0.93990 0.98025 1.01831 1.21911 0.97206 0.99381 0.98170 1.21113 0.79648 0.96891 0.98236 0.91583 1.46350 1.08094 1.26141 1.55646 1.21074 0.91253 0.80589 0.76883 1.90629 1.64613 1.42945 1.48489 1.21518 0.90331 1.00777 1.03220 1.19192 0.94188 0.94217 0.95477 1.21431 0.91545 1.09299 1.34377 0.93143 1.25772 0.96023 0.99968 0.96470 1.70016 1.11401 1.32226 1.44717 0.85852 0.79532 0.79659 0.78806 1.19380 1.20215 1.18810 0.91078 0.93134 0.92518 0.91455 0.93081 0.91646 0.94981 0.93150 0.91747 0.92355 0.89313 0.90727 0.90911 0.93054 0.91145 0.90564 0.94625 0.74743 0.88198 0.88240 0.97389 0.97528 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 6.99 71.98 0.50 -2.52 16 2 C -0.06 -0.96 0.58 -52.18 -0.03 -0.99 16 3 C -0.14 -1.73 7.92 71.98 0.57 -1.16 16 4 C -0.15 -3.05 7.70 71.98 0.55 -2.50 16 5 C -0.07 -1.13 1.33 -10.79 -0.01 -1.15 16 6 H 0.09 1.16 8.08 -2.39 -0.02 1.14 16 7 C -0.11 -1.44 4.45 30.59 0.14 -1.31 16 8 C -0.11 -1.40 5.92 30.60 0.18 -1.22 16 9 C -0.12 -1.96 5.92 30.60 0.18 -1.78 16 10 C -0.13 -2.75 5.53 30.59 0.17 -2.58 16 11 C 0.15 3.30 1.44 44.99 0.06 3.36 16 12 H 0.07 1.92 5.62 -2.39 -0.01 1.91 16 13 N -0.71 -17.93 2.78 -442.53 -1.23 -19.16 16 14 C 0.51 18.48 7.18 87.66 0.63 19.11 16 15 O -0.59 -26.36 15.56 -3.03 -0.05 -26.41 16 16 C -0.12 -4.59 5.64 29.85 0.17 -4.42 16 17 C 0.01 0.37 3.33 29.85 0.10 0.47 16 18 C -0.53 -30.97 9.66 25.60 0.25 -30.72 16 19 H 0.05 3.10 7.99 -2.91 -0.02 3.08 16 20 C 0.02 0.93 5.47 84.65 0.46 1.39 16 21 N -0.94 -59.60 13.96 21.44 0.30 -59.30 16 22 Si 0.94 47.58 27.47 68.60 1.88 49.47 16 23 H -0.27 -13.20 7.11 99.48 0.71 -12.50 16 24 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 25 H -0.26 -13.41 6.54 99.48 0.65 -12.76 16 26 H 0.07 1.02 7.65 -2.39 -0.02 1.01 16 27 H 0.05 0.94 8.10 -2.39 -0.02 0.92 16 28 H 0.06 1.32 5.00 -2.39 -0.01 1.31 16 29 H 0.07 0.72 6.33 -2.39 -0.02 0.71 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.03 0.88 6.33 -2.39 -0.02 0.86 16 33 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.06 1.18 6.61 -2.39 -0.02 1.17 16 35 H 0.06 0.87 6.61 -2.39 -0.02 0.85 16 36 H 0.09 0.85 6.33 -2.39 -0.02 0.83 16 37 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 42 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.41 8.10 6.69 -92.71 -0.62 7.48 16 44 H 0.10 3.53 8.14 -2.39 -0.02 3.51 16 45 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 46 H 0.01 0.42 7.16 -2.39 -0.02 0.40 16 47 H 0.01 0.34 7.52 -2.39 -0.02 0.32 16 48 H 0.27 15.79 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -72.23 353.48 5.07 -67.16 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.24 Total: 14.25 kcal Atomic # 6 Polarization: -29.94 SS G_CDS: 3.92 Total: -26.02 kcal Atomic # 7 Polarization: -77.52 SS G_CDS: -0.93 Total: -78.45 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.05 Total: -26.41 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 1.88 Total: 49.47 kcal Total: -72.23 5.07 -67.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330891263.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.903 kcal (2) G-P(sol) polarization free energy of solvation -72.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds